Wall clock time and date at job start Sat Mar 6 2021 17:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47151 * 2 1 4 4 C 1.53001 * 109.47095 * 240.00007 * 2 1 3 5 5 O 1.45197 * 109.47275 * 119.99685 * 2 1 3 6 6 C 1.34641 * 116.99788 * 59.99897 * 5 2 1 7 7 O 1.21507 * 120.00019 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00105 * 180.02562 * 6 5 2 9 9 C 1.46492 * 119.99930 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47696 * 34.99761 * 9 8 6 11 11 C 1.53002 * 109.47204 * 155.00105 * 9 8 6 12 12 C 1.53000 * 109.47233 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 9 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 15 15 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 16 16 C 1.34777 * 120.00270 * 154.99797 * 15 13 12 17 17 O 1.21613 * 119.99836 * 0.02562 * 16 15 13 18 18 C 1.47379 * 120.00191 * 180.02562 * 16 15 13 19 19 C 1.36410 * 127.19001 * 359.68817 * 18 16 15 20 20 O 1.33659 * 108.39770 * 179.83705 * 19 18 16 21 21 C 1.34215 * 110.90283 * 0.44631 * 20 19 18 22 22 C 1.50702 * 125.43525 * 179.72556 * 21 20 19 23 23 O 1.42906 * 109.46720 * 119.99957 * 22 21 20 24 24 Si 1.86299 * 109.47195 * 0.02562 * 22 21 20 25 25 C 1.34180 * 109.12645 * 359.72536 * 21 20 19 26 26 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 27 27 C 1.52997 * 109.47244 * 274.99857 * 9 8 6 28 28 H 1.08999 * 109.47552 * 300.00496 * 1 2 3 29 29 H 1.09008 * 109.46861 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.47598 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47011 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46853 * 299.99803 * 3 2 1 33 33 H 1.08996 * 109.47134 * 59.99848 * 3 2 1 34 34 H 1.09001 * 109.46887 * 299.99860 * 4 2 1 35 35 H 1.08997 * 109.47436 * 59.99874 * 4 2 1 36 36 H 1.09006 * 109.46881 * 180.02562 * 4 2 1 37 37 H 0.96998 * 119.99716 * 359.97438 * 8 6 5 38 38 H 1.08992 * 109.47063 * 59.99836 * 11 9 8 39 39 H 1.09004 * 109.46733 * 299.99549 * 11 9 8 40 40 H 1.09002 * 109.47398 * 59.99826 * 12 11 9 41 41 H 1.09001 * 109.47194 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99491 * 335.00093 * 15 13 12 43 43 H 1.08005 * 125.80260 * 359.97438 * 19 18 16 44 44 H 1.08998 * 109.47054 * 239.99586 * 22 21 20 45 45 H 0.96700 * 113.99969 * 299.99546 * 23 22 21 46 46 H 1.48497 * 109.99950 * 180.02562 * 24 22 21 47 47 H 1.48503 * 109.99529 * 301.31841 * 24 22 21 48 48 H 1.08002 * 127.02076 * 180.02562 * 25 21 20 49 49 H 1.09000 * 109.47486 * 180.02562 * 26 13 12 50 50 H 1.09002 * 109.46716 * 60.00091 * 26 13 12 51 51 H 1.09002 * 109.47153 * 300.00242 * 27 9 8 52 52 H 1.09001 * 109.47289 * 60.00326 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4173 9 6 1.6740 -4.0667 2.5832 10 1 1.6282 -4.5494 1.6070 11 6 2.7025 -4.7847 3.4594 12 6 2.2921 -6.2485 3.6322 13 6 0.9171 -6.3173 4.2995 14 1 0.9625 -5.8349 5.2759 15 7 0.5244 -7.7189 4.4655 16 6 -0.3488 -8.0641 5.4325 17 8 -0.8110 -7.2120 6.1668 18 6 -0.7434 -9.4742 5.5999 19 6 -0.3238 -10.5412 4.8608 20 8 -0.9136 -11.6421 5.3368 21 6 -1.7228 -11.3452 6.3655 22 6 -2.5513 -12.3375 7.1401 23 8 -2.1625 -12.3122 8.5150 24 14 -2.2795 -14.0464 6.4498 25 6 -1.6764 -10.0239 6.5942 26 6 -0.1115 -5.5994 3.4234 27 6 0.2990 -4.1350 3.2508 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6268 -2.2365 3.0834 38 1 2.7482 -4.3021 4.4356 39 1 3.6820 -4.7361 2.9837 40 1 2.2467 -6.7309 2.6558 41 1 3.0246 -6.7599 4.2568 42 1 0.8928 -8.3984 3.8796 43 1 0.3692 -10.5032 4.0332 44 1 -3.6058 -12.0746 7.0558 45 1 -1.2340 -12.5368 8.6654 46 1 -3.0916 -15.0342 7.2048 47 1 -2.6497 -14.0781 5.0120 48 1 -2.2142 -9.4761 7.3539 49 1 -1.0911 -5.6480 3.8990 50 1 -0.1569 -6.0817 2.4470 51 1 0.3447 -3.6524 4.2271 52 1 -0.4338 -3.6236 2.6266 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12463208_13456056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:24:34 Heat of formation + Delta-G solvation = -138.342363 kcal Electronic energy + Delta-G solvation = -33271.700189 eV Core-core repulsion = 28625.423439 eV Total energy + Delta-G solvation = -4646.276750 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.73777 -41.79188 -40.93307 -39.51089 -38.06923 -37.86865 -35.98071 -35.05059 -34.21340 -33.56197 -31.98787 -31.84637 -29.49482 -28.31073 -28.27120 -26.73843 -25.28050 -24.07645 -23.78090 -22.36599 -22.25699 -21.49568 -21.03427 -20.57279 -19.41814 -18.99453 -17.94156 -17.72021 -17.55359 -17.31473 -17.21695 -17.02847 -16.62147 -16.16303 -16.04360 -15.72171 -15.53884 -15.47371 -15.11988 -14.94985 -14.73327 -14.45552 -14.22707 -14.13938 -13.99211 -13.83391 -13.58247 -13.40921 -13.37237 -13.15089 -12.89036 -12.84355 -12.81525 -12.79672 -12.62877 -12.31914 -12.29916 -12.20459 -12.15741 -11.62833 -11.60167 -11.26659 -11.04625 -10.91718 -10.88786 -10.68606 -10.19732 -10.08872 -9.81681 -5.09513 0.21307 0.88170 1.10500 1.20911 1.43376 1.75355 1.88825 1.92949 2.02050 2.34630 3.13365 3.17772 3.36493 3.46788 3.49143 3.57876 3.79722 3.84507 3.86708 3.88657 3.94434 3.99072 4.04558 4.21575 4.23760 4.26551 4.30783 4.37363 4.53219 4.57467 4.57659 4.58099 4.64583 4.67109 4.76120 4.79665 4.82589 4.86895 4.92336 4.93106 4.94788 5.09134 5.12554 5.16173 5.17919 5.21411 5.33767 5.38088 5.42864 5.49391 5.63870 5.80982 6.35629 6.41826 6.45190 7.19608 7.46404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.651 3.349 7 O -0.566 6.566 8 N -0.709 5.709 9 C 0.162 3.838 10 H 0.094 0.906 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.144 3.856 14 H 0.093 0.907 15 N -0.725 5.725 16 C 0.589 3.411 17 O -0.529 6.529 18 C -0.238 4.238 19 C 0.031 3.969 20 O -0.166 6.166 21 C -0.058 4.058 22 C -0.029 4.029 23 O -0.529 6.529 24 Si 0.707 3.293 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.129 4.129 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.406 0.594 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.398 0.602 43 H 0.214 0.786 44 H 0.133 0.867 45 H 0.384 0.616 46 H -0.247 1.247 47 H -0.253 1.253 48 H 0.162 0.838 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -2.316 -1.570 6.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.368 5.368 9 C 0.058 3.942 10 H 0.112 0.888 11 C -0.162 4.162 12 C -0.160 4.160 13 C 0.040 3.960 14 H 0.111 0.889 15 N -0.376 5.376 16 C 0.377 3.623 17 O -0.406 6.406 18 C -0.242 4.242 19 C -0.039 4.039 20 O -0.062 6.062 21 C -0.107 4.107 22 C -0.139 4.139 23 O -0.335 6.335 24 Si 0.606 3.394 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.168 4.168 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.241 0.759 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.230 0.770 44 H 0.150 0.850 45 H 0.232 0.768 46 H -0.171 1.171 47 H -0.177 1.177 48 H 0.179 0.821 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.224 -2.712 -1.902 5.368 hybrid contribution 0.124 0.834 -0.108 0.850 sum 4.348 -1.878 -2.010 5.145 Atomic orbital electron populations 1.22520 0.93867 1.05043 1.02692 1.22105 0.94428 0.91550 0.81881 1.21879 1.02312 0.92395 1.03329 1.22521 1.01567 1.03447 0.96554 1.86308 1.71516 1.23503 1.46695 1.18117 0.78734 0.80624 0.82122 1.90913 1.40870 1.70352 1.43346 1.44811 1.55703 1.12525 1.23727 1.21037 0.93929 0.78769 1.00438 0.88814 1.21753 0.98802 0.95005 1.00635 1.21741 0.95946 0.96630 1.01713 1.21070 0.93486 0.80996 1.00421 0.88892 1.45879 1.46729 1.09782 1.35241 1.17259 0.78446 0.86658 0.79982 1.90824 1.54056 1.51080 1.44657 1.21539 1.06251 0.94045 1.02401 1.24472 0.97631 0.82953 0.98855 1.83687 1.47156 1.35101 1.40227 1.22746 0.98865 0.96223 0.92846 1.24454 0.98332 1.06907 0.84239 1.86580 1.32934 1.92900 1.21084 0.94274 0.90546 0.74944 0.79613 1.22539 0.99442 0.92528 0.99805 1.21889 0.99604 0.94810 1.00227 1.21933 0.96723 0.96652 1.01502 0.92132 0.90967 0.89428 0.91406 0.89960 0.91394 0.89434 0.90968 0.92148 0.75943 0.90538 0.90216 0.90708 0.90228 0.76812 0.76960 0.84967 0.76806 1.17136 1.17736 0.82052 0.90778 0.91278 0.91173 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.29 8.37 37.16 0.31 0.02 16 2 C 0.14 0.20 1.13 -90.62 -0.10 0.10 16 3 C -0.14 0.08 8.85 37.16 0.33 0.41 16 4 C -0.18 -0.25 8.37 37.16 0.31 0.06 16 5 O -0.37 -0.92 9.94 -40.33 -0.40 -1.32 16 6 C 0.65 1.77 8.02 54.06 0.43 2.21 16 7 O -0.57 -2.80 11.54 -19.28 -0.22 -3.02 16 8 N -0.71 0.17 5.08 -58.73 -0.30 -0.12 16 9 C 0.16 -0.18 2.45 -67.94 -0.17 -0.35 16 10 H 0.09 0.02 7.58 -51.93 -0.39 -0.37 16 11 C -0.12 0.42 5.39 -26.73 -0.14 0.27 16 12 C -0.12 0.45 5.39 -26.73 -0.14 0.31 16 13 C 0.14 -0.19 2.45 -67.93 -0.17 -0.36 16 14 H 0.09 0.05 7.58 -51.93 -0.39 -0.34 16 15 N -0.73 1.09 5.07 -54.90 -0.28 0.81 16 16 C 0.59 1.26 7.78 -12.54 -0.10 1.16 16 17 O -0.53 -3.41 16.65 5.27 0.09 -3.33 16 18 C -0.24 -0.21 6.31 -103.28 -0.65 -0.86 16 19 C 0.03 -0.07 11.61 30.07 0.35 0.28 16 20 O -0.17 0.12 8.89 7.64 0.07 0.19 16 21 C -0.06 -0.01 6.20 -35.74 -0.22 -0.23 16 22 C -0.03 0.02 2.98 36.01 0.11 0.13 16 23 O -0.53 0.27 12.86 -35.23 -0.45 -0.18 16 24 Si 0.71 -1.18 32.08 -169.99 -5.45 -6.64 16 25 C -0.12 -0.22 10.88 -37.46 -0.41 -0.63 16 26 C -0.13 0.04 5.50 -26.70 -0.15 -0.11 16 27 C -0.13 0.02 5.50 -26.70 -0.15 -0.12 16 28 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 0.02 8.14 -51.92 -0.42 -0.41 16 30 H 0.09 0.32 5.88 -51.93 -0.31 0.01 16 31 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.09 0.30 5.88 -51.93 -0.31 -0.01 16 35 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.41 -0.89 8.71 -40.82 -0.36 -1.25 16 38 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 39 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 40 H 0.07 -0.33 8.14 -51.93 -0.42 -0.75 16 41 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 42 H 0.40 -1.88 7.57 -40.82 -0.31 -2.19 16 43 H 0.21 -1.44 7.47 -52.48 -0.39 -1.83 16 44 H 0.13 -0.13 7.96 -51.93 -0.41 -0.54 16 45 H 0.38 -1.71 8.70 45.56 0.40 -1.31 16 46 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 47 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 48 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 49 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 51 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 52 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 LS Contribution 421.03 15.07 6.34 6.34 Total: 0.00 -10.43 421.03 -9.60 -20.02 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: -8.43 Total: -15.04 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.55 Total: 2.28 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -0.58 Total: 0.69 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.92 Total: -7.66 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.45 Total: -6.64 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -10.43 -9.60 -20.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_13456056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.318 kcal (2) G-P(sol) polarization free energy of solvation -10.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds