Wall clock time and date at job start Sat Mar 6 2021 17:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47394 * 239.99711 * 2 1 3 5 5 O 1.45199 * 109.46977 * 119.99648 * 2 1 3 6 6 C 1.34644 * 117.00135 * 60.00222 * 5 2 1 7 7 O 1.21516 * 119.99604 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00016 * 179.72609 * 6 5 2 9 9 C 1.46496 * 119.99973 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47229 * 324.99619 * 9 8 6 11 11 C 1.52996 * 109.47520 * 84.99489 * 9 8 6 12 12 C 1.52996 * 109.47347 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47435 * 300.00222 * 12 11 9 14 14 H 1.09000 * 109.47121 * 299.99770 * 13 12 11 15 15 N 1.46506 * 109.47467 * 179.97438 * 13 12 11 16 16 C 1.34773 * 119.99732 * 84.99934 * 15 13 12 17 17 O 1.21642 * 120.00482 * 0.02562 * 16 15 13 18 18 C 1.47186 * 119.99744 * 180.02562 * 16 15 13 19 19 C 1.36001 * 123.46341 * 0.02562 * 18 16 15 20 20 S 1.70453 * 110.81988 * 179.97438 * 19 18 16 21 21 C 1.75507 * 92.44499 * 0.02562 * 20 19 18 22 22 C 1.50695 * 124.71445 * 180.02562 * 21 20 19 23 23 O 1.42907 * 109.47016 * 244.97263 * 22 21 20 24 24 Si 1.86304 * 109.47080 * 4.97016 * 22 21 20 25 25 C 1.32774 * 110.57206 * 359.73291 * 21 20 19 26 26 C 1.53006 * 109.47071 * 59.99718 * 13 12 11 27 27 C 1.52996 * 109.47221 * 300.00413 * 26 13 12 28 28 H 1.08994 * 109.46868 * 300.00107 * 1 2 3 29 29 H 1.09004 * 109.46642 * 60.00445 * 1 2 3 30 30 H 1.08996 * 109.46553 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46600 * 299.99846 * 3 2 1 33 33 H 1.09002 * 109.47255 * 59.99951 * 3 2 1 34 34 H 1.09007 * 109.47187 * 300.00347 * 4 2 1 35 35 H 1.08999 * 109.47137 * 59.99569 * 4 2 1 36 36 H 1.08991 * 109.47351 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00018 * 359.97438 * 8 6 5 38 38 H 1.09007 * 109.47256 * 300.00339 * 11 9 8 39 39 H 1.09000 * 109.47016 * 60.00296 * 11 9 8 40 40 H 1.09006 * 109.47173 * 179.97438 * 12 11 9 41 41 H 1.09003 * 109.47273 * 60.00209 * 12 11 9 42 42 H 0.96999 * 119.99717 * 265.00432 * 15 13 12 43 43 H 1.08002 * 124.59486 * 359.97438 * 19 18 16 44 44 H 1.08992 * 109.47428 * 124.97282 * 22 21 20 45 45 H 0.96698 * 113.99691 * 59.99735 * 23 22 21 46 46 H 1.48501 * 109.99487 * 58.68294 * 24 22 21 47 47 H 1.48497 * 109.99762 * 180.02562 * 24 22 21 48 48 H 1.08004 * 123.45389 * 180.23024 * 25 21 20 49 49 H 1.08995 * 109.46964 * 180.02562 * 26 13 12 50 50 H 1.09003 * 109.46853 * 60.00493 * 26 13 12 51 51 H 1.09000 * 109.46778 * 299.99830 * 27 26 13 52 52 H 1.08997 * 109.47350 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3385 7 8 0.9509 -2.5095 0.5041 8 7 2.0722 -2.6671 2.4143 9 6 1.6791 -4.0685 2.5803 10 1 0.6682 -4.2101 2.1977 11 6 2.6475 -4.9651 1.8062 12 6 2.2372 -6.4287 1.9802 13 6 2.2774 -6.7967 3.4647 14 1 3.2882 -6.6549 3.8470 15 7 1.8840 -8.1981 3.6313 16 6 2.8014 -9.1761 3.4967 17 8 3.9562 -8.8953 3.2374 18 6 2.4061 -10.5840 3.6635 19 6 1.1368 -10.9772 3.9531 20 16 1.0410 -12.6748 4.0737 21 6 2.7504 -12.8710 3.7275 22 6 3.4649 -14.1958 3.6557 23 8 4.4286 -14.2748 4.7081 24 14 2.2298 -15.5783 3.8397 25 6 3.3252 -11.6903 3.5313 26 6 1.3089 -5.9001 4.2388 27 6 1.7191 -4.4365 4.0648 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6354 -2.2394 3.0783 38 1 2.6192 -4.7026 0.7486 39 1 3.6583 -4.8236 2.1888 40 1 2.9270 -7.0674 1.4283 41 1 1.2264 -6.5706 1.5979 42 1 0.9631 -8.4220 3.8384 43 1 0.3023 -10.3050 4.0884 44 1 3.9694 -14.2849 2.6937 45 1 4.0495 -14.2026 5.5947 46 1 1.2039 -15.4884 2.7699 47 1 2.9221 -16.8903 3.7714 48 1 4.3732 -11.5694 3.2999 49 1 1.3378 -6.1620 5.2964 50 1 0.2980 -6.0421 3.8565 51 1 2.7300 -4.2946 4.4471 52 1 1.0295 -3.7978 4.6166 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12463208_6894386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:26:47 Heat of formation + Delta-G solvation = -127.148276 kcal Electronic energy + Delta-G solvation = -32924.963243 eV Core-core repulsion = 28403.242584 eV Total energy + Delta-G solvation = -4521.720659 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.93436 -41.27363 -39.83640 -38.80051 -37.99590 -37.09586 -36.11692 -35.15703 -33.94571 -31.90226 -31.83297 -29.47152 -28.39486 -28.32387 -26.95180 -25.81578 -24.17938 -23.88512 -22.54730 -21.88319 -21.51230 -20.97541 -20.33402 -19.21741 -18.91743 -18.07910 -17.84360 -17.71863 -17.19533 -17.07376 -16.64260 -16.37982 -16.07389 -15.86644 -15.59759 -15.48823 -15.21440 -15.11125 -14.92864 -14.57022 -14.52058 -14.14018 -14.10299 -13.84862 -13.63589 -13.55060 -13.37295 -13.31792 -13.16425 -12.94630 -12.89113 -12.83924 -12.65510 -12.60625 -12.39279 -12.29979 -12.29469 -12.20101 -11.92937 -11.56614 -11.55346 -11.40720 -11.14841 -11.01778 -10.58692 -10.28224 -10.16065 -9.99205 -9.42924 -5.14612 -0.33167 0.39792 0.69780 0.82504 1.13792 1.22110 1.60456 1.73772 1.90222 2.07983 2.26690 3.11022 3.39579 3.56889 3.58912 3.66235 3.71996 3.77171 3.88811 3.91591 3.92121 3.98444 4.07000 4.11009 4.27347 4.29618 4.33241 4.39617 4.40502 4.50948 4.58634 4.60642 4.67543 4.71519 4.72547 4.73853 4.82187 4.85169 4.92123 4.99855 5.01943 5.05821 5.08067 5.08607 5.15678 5.20125 5.24187 5.24539 5.28919 5.40024 5.45491 5.58135 6.38562 6.47670 6.68572 7.15909 7.32875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.697 5.697 9 C 0.166 3.834 10 H 0.083 0.917 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.146 3.854 14 H 0.073 0.927 15 N -0.706 5.706 16 C 0.576 3.424 17 O -0.584 6.584 18 C -0.185 4.185 19 C -0.188 4.188 20 S 0.253 5.747 21 C -0.251 4.251 22 C -0.039 4.039 23 O -0.553 6.553 24 Si 0.744 3.256 25 C -0.077 4.077 26 C -0.113 4.113 27 C -0.116 4.116 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.415 0.585 43 H 0.207 0.793 44 H 0.112 0.888 45 H 0.397 0.603 46 H -0.257 1.257 47 H -0.273 1.273 48 H 0.129 0.871 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 0.916 6.171 9.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.483 6.483 8 N -0.357 5.357 9 C 0.062 3.938 10 H 0.101 0.899 11 C -0.162 4.162 12 C -0.158 4.158 13 C 0.042 3.958 14 H 0.091 0.909 15 N -0.358 5.358 16 C 0.363 3.637 17 O -0.465 6.465 18 C -0.203 4.203 19 C -0.326 4.326 20 S 0.520 5.480 21 C -0.367 4.367 22 C -0.151 4.151 23 O -0.361 6.361 24 Si 0.645 3.355 25 C -0.107 4.107 26 C -0.151 4.151 27 C -0.155 4.155 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.253 0.747 43 H 0.224 0.776 44 H 0.129 0.871 45 H 0.247 0.753 46 H -0.182 1.182 47 H -0.199 1.199 48 H 0.147 0.853 49 H 0.113 0.887 50 H 0.107 0.893 51 H 0.101 0.899 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.779 -0.827 4.984 9.276 hybrid contribution 1.891 1.490 -0.897 2.569 sum -5.888 0.663 4.087 7.198 Atomic orbital electron populations 1.22467 0.93869 1.03742 1.03541 1.22341 0.94578 0.92530 0.81438 1.21893 1.02385 0.90923 1.04292 1.22473 1.01506 1.02264 0.97516 1.86314 1.71545 1.23436 1.47217 1.18379 0.78702 0.80692 0.82548 1.90903 1.42385 1.71057 1.44002 1.44831 1.54940 1.12369 1.23539 1.21047 0.98652 0.76937 0.97119 0.89881 1.21829 0.99848 0.94282 1.00244 1.21781 1.02098 0.95286 0.96672 1.21043 1.00057 0.79735 0.94990 0.90863 1.45754 1.12704 1.05735 1.71570 1.17915 0.84785 0.85332 0.75711 1.90796 1.20878 1.84517 1.50351 1.20109 0.94178 0.93440 1.12579 1.26196 1.00423 1.03219 1.02791 1.82857 1.03017 0.97896 1.64279 1.24899 0.99569 0.99565 1.12700 1.24709 0.98068 0.98439 0.93841 1.86507 1.35522 1.95752 1.18314 0.94196 0.77539 0.75836 0.87900 1.20989 1.00206 0.90369 0.99120 1.21714 0.99211 0.92651 1.01561 1.21733 1.04270 0.96591 0.92865 0.91797 0.89536 0.91713 0.91331 0.88341 0.91040 0.91837 0.89472 0.92184 0.74660 0.93190 0.91347 0.93595 0.90667 0.74695 0.77640 0.87071 0.75286 1.18212 1.19881 0.85309 0.88682 0.89268 0.89890 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 2 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.76 8.37 71.98 0.60 -0.15 16 5 O -0.37 -2.18 9.94 -55.54 -0.55 -2.73 16 6 C 0.64 4.41 8.02 129.79 1.04 5.45 16 7 O -0.59 -7.13 11.55 19.79 0.23 -6.90 16 8 N -0.70 -0.22 5.08 -570.13 -2.90 -3.12 16 9 C 0.17 -0.24 2.45 44.99 0.11 -0.13 16 10 H 0.08 0.11 7.58 -2.39 -0.02 0.09 16 11 C -0.12 -0.23 5.49 30.59 0.17 -0.06 16 12 C -0.12 -0.18 5.49 30.59 0.17 -0.02 16 13 C 0.15 -0.22 2.45 44.99 0.11 -0.11 16 14 H 0.07 0.23 7.58 -2.39 -0.02 0.21 16 15 N -0.71 1.34 5.05 -446.01 -2.25 -0.91 16 16 C 0.58 3.58 7.76 86.59 0.67 4.25 16 17 O -0.58 -9.34 16.46 -4.16 -0.07 -9.41 16 18 C -0.19 -0.48 5.98 -19.87 -0.12 -0.60 16 19 C -0.19 0.99 10.38 67.30 0.70 1.68 16 20 S 0.25 -1.48 20.20 -56.49 -1.14 -2.62 16 21 C -0.25 -0.04 5.65 24.51 0.14 0.10 16 22 C -0.04 0.01 2.94 71.23 0.21 0.22 16 23 O -0.55 -0.63 12.88 -148.98 -1.92 -2.55 16 24 Si 0.74 -2.64 30.92 68.60 2.12 -0.52 16 25 C -0.08 -0.41 9.95 22.67 0.23 -0.18 16 26 C -0.11 0.92 5.39 30.59 0.16 1.08 16 27 C -0.12 0.85 5.39 30.59 0.16 1.02 16 28 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 31 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 0.61 5.88 -2.38 -0.01 0.59 16 35 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.06 0.23 8.14 -2.39 -0.02 0.22 16 37 H 0.42 -1.75 8.71 -92.71 -0.81 -2.56 16 38 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.42 -3.80 7.10 -92.71 -0.66 -4.46 16 43 H 0.21 -2.70 7.01 -2.91 -0.02 -2.73 16 44 H 0.11 0.17 7.96 -2.39 -0.02 0.15 16 45 H 0.40 -2.99 8.70 -74.06 -0.64 -3.64 16 46 H -0.26 0.08 7.11 99.48 0.71 0.79 16 47 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 48 H 0.13 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 50 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 51 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 52 H 0.09 -0.89 8.14 -2.39 -0.02 -0.90 16 Total: 0.00 -26.06 426.96 -2.01 -28.07 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: -1.11 Total: -13.16 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.58 Total: 13.86 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -5.15 Total: -4.03 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -2.31 Total: -21.59 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.12 Total: -0.52 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.14 Total: -2.62 kcal Total: -26.06 -2.01 -28.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12463208_6894386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.081 kcal (2) G-P(sol) polarization free energy of solvation -26.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds