Wall clock time and date at job start Sun Mar 7 2021 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86296 * 109.46894 * 2 1 4 4 C 1.50711 * 109.46783 * 240.00379 * 2 1 3 5 5 C 1.37938 * 119.91962 * 299.99942 * 4 2 1 6 6 C 1.39600 * 119.86981 * 180.02562 * 5 4 2 7 7 C 1.47846 * 120.13808 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00068 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99970 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99637 * 180.02562 * 9 7 6 11 11 H 1.08993 * 109.47378 * 324.99749 * 10 9 7 12 12 C 1.52999 * 109.47050 * 85.00741 * 10 9 7 13 13 C 1.52997 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47131 * 299.99311 * 13 12 10 15 15 H 1.08996 * 109.47452 * 300.00000 * 14 13 12 16 16 O 1.42911 * 109.47245 * 180.02562 * 14 13 12 17 17 C 1.35690 * 116.99542 * 90.00042 * 16 14 13 18 18 N 1.32219 * 119.69772 * 359.73339 * 17 16 14 19 19 C 1.31985 * 121.66235 * 179.71278 * 18 17 16 20 20 C 1.38032 * 120.85409 * 0.55712 * 19 18 17 21 21 C 1.38828 * 119.30297 * 359.73127 * 20 19 18 22 22 C 1.38461 * 118.47436 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 120.45364 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46972 * 60.00459 * 14 13 12 25 25 C 1.52997 * 109.46817 * 299.99733 * 24 14 13 26 26 C 1.39541 * 119.72333 * 0.24423 * 6 5 4 27 27 C 1.38075 * 119.83709 * 359.45482 * 26 6 5 28 28 Br 1.89105 * 119.93545 * 180.29762 * 27 26 6 29 29 C 1.38358 * 119.91800 * 119.97743 * 4 2 1 30 30 H 0.96697 * 114.00439 * 60.00225 * 1 2 3 31 31 H 1.08994 * 109.47670 * 120.00148 * 2 1 3 32 32 H 1.48500 * 110.00430 * 298.68181 * 3 2 1 33 33 H 1.48493 * 110.00301 * 60.00544 * 3 2 1 34 34 H 1.08003 * 120.06679 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00328 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.46719 * 299.99449 * 12 10 9 37 37 H 1.08993 * 109.47839 * 59.99291 * 12 10 9 38 38 H 1.09001 * 109.47289 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47611 * 59.99933 * 13 12 10 40 40 H 1.07994 * 119.56758 * 180.28424 * 19 18 17 41 41 H 1.08002 * 120.34624 * 179.74611 * 20 19 18 42 42 H 1.08006 * 120.76159 * 180.02562 * 21 20 19 43 43 H 1.09002 * 109.47070 * 179.97438 * 24 14 13 44 44 H 1.08996 * 109.47407 * 59.99513 * 24 14 13 45 45 H 1.09001 * 109.47502 * 300.00518 * 25 24 14 46 46 H 1.09001 * 109.47289 * 180.02562 * 25 24 14 47 47 H 1.08002 * 120.08183 * 179.75268 * 26 6 5 48 48 H 1.07999 * 119.86348 * 359.97438 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.5970 -2.0310 -1.4473 6 6 2.0632 -2.6882 -2.5873 7 6 1.7090 -4.1037 -2.8252 8 8 1.0108 -4.6979 -2.0270 9 7 2.1603 -4.7353 -3.9270 10 6 1.8088 -6.1378 -4.1629 11 1 1.7609 -6.6656 -3.2105 12 6 0.4472 -6.2126 -4.8566 13 6 0.0804 -7.6773 -5.1035 14 6 1.1424 -8.3259 -5.9936 15 1 1.1903 -7.7978 -6.9460 16 8 0.7996 -9.6939 -6.2248 17 6 0.0256 -9.9604 -7.3070 18 7 -0.3769 -8.9697 -8.0845 19 6 -1.1259 -9.1853 -9.1497 20 6 -1.5279 -10.4623 -9.4857 21 6 -1.1315 -11.5303 -8.6922 22 6 -0.3411 -11.2724 -7.5850 23 17 0.1833 -12.5692 -6.5570 24 6 2.5041 -8.2512 -5.3000 25 6 2.8709 -6.7865 -5.0530 26 6 2.8697 -2.0051 -3.4985 27 6 3.1919 -0.6815 -3.2731 28 35 4.2776 0.2493 -4.5104 29 6 2.7262 -0.0362 -2.1405 30 1 -0.3934 0.4416 -0.7650 31 1 1.7924 -0.5138 0.8899 32 1 1.5878 2.4586 -1.2242 33 1 1.5615 2.4678 1.2085 34 1 0.9764 -2.5558 -0.7360 35 1 2.7178 -4.2613 -4.5637 36 1 -0.3094 -5.7502 -4.2227 37 1 0.4951 -5.6849 -5.8090 38 1 -0.8898 -7.7307 -5.5974 39 1 0.0325 -8.2055 -4.1513 40 1 -1.4317 -8.3513 -9.7638 41 1 -2.1441 -10.6289 -10.3569 42 1 -1.4322 -12.5392 -8.9334 43 1 3.2607 -8.7136 -5.9339 44 1 2.4563 -8.7792 -4.3477 45 1 2.9187 -6.2583 -6.0053 46 1 3.8412 -6.7331 -4.5593 47 1 3.2369 -2.5090 -4.3803 48 1 2.9843 0.9979 -1.9664 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12496662_12335870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:36:51 Heat of formation + Delta-G solvation = -38.790111 kcal Electronic energy + Delta-G solvation = -34663.967428 eV Core-core repulsion = 29757.924853 eV Total energy + Delta-G solvation = -4906.042575 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 467.033 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.94494 -41.62614 -40.45028 -39.64868 -38.08177 -37.79799 -37.61315 -35.18117 -33.61813 -33.42055 -33.14769 -31.97407 -31.48462 -30.45402 -29.66242 -27.04398 -25.76211 -24.82474 -24.44500 -23.85499 -22.87385 -22.79312 -21.56233 -21.02212 -19.64005 -19.19080 -18.29008 -18.06008 -17.67970 -17.41202 -17.36196 -16.89843 -16.66800 -16.42708 -16.20344 -15.99727 -15.89057 -15.67383 -15.23807 -15.07807 -14.95959 -14.82227 -14.45057 -14.29872 -14.24265 -14.10622 -13.97659 -13.40111 -13.35569 -13.29193 -13.14308 -13.03773 -12.99498 -12.77661 -12.32199 -12.27875 -12.22308 -12.09126 -11.96480 -11.84417 -11.56724 -11.47600 -11.33275 -11.18666 -10.79139 -10.74765 -10.72146 -10.39397 -10.13217 -9.90419 -9.48270 -4.98024 -0.51906 -0.16216 -0.11700 0.11574 0.43683 1.03595 1.19988 1.52029 1.54664 1.75830 1.91032 1.99655 2.45992 2.58305 3.20815 3.24511 3.31461 3.43040 3.53169 3.56245 3.69170 3.78891 3.86936 3.88959 3.91008 3.95669 4.00134 4.03980 4.13547 4.20819 4.22598 4.26549 4.31656 4.35769 4.38905 4.54513 4.55153 4.72727 4.76289 4.79481 4.87129 4.92802 4.95993 5.00485 5.01482 5.03664 5.07440 5.16515 5.18410 5.33333 5.37603 5.40828 6.11333 6.35884 6.41245 6.65653 7.03263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.084 4.084 3 Si 0.762 3.238 4 C -0.114 4.114 5 C -0.030 4.030 6 C -0.136 4.136 7 C 0.560 3.440 8 O -0.572 6.572 9 N -0.705 5.705 10 C 0.145 3.855 11 H 0.072 0.928 12 C -0.115 4.115 13 C -0.124 4.124 14 C 0.092 3.908 15 H 0.094 0.906 16 O -0.305 6.305 17 C 0.316 3.684 18 N -0.541 5.541 19 C 0.137 3.863 20 C -0.191 4.191 21 C -0.035 4.035 22 C -0.133 4.133 23 Cl -0.056 7.056 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.043 4.043 27 C -0.099 4.099 28 Br -0.028 7.028 29 C -0.061 4.061 30 H 0.388 0.612 31 H 0.131 0.869 32 H -0.273 1.273 33 H -0.297 1.297 34 H 0.130 0.870 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.164 0.836 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 2.549 -7.242 8.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.193 4.193 3 Si 0.666 3.334 4 C -0.115 4.115 5 C -0.049 4.049 6 C -0.140 4.140 7 C 0.348 3.652 8 O -0.452 6.452 9 N -0.357 5.357 10 C 0.041 3.959 11 H 0.090 0.910 12 C -0.154 4.154 13 C -0.162 4.162 14 C 0.036 3.964 15 H 0.112 0.888 16 O -0.212 6.212 17 C 0.137 3.863 18 N -0.265 5.265 19 C -0.018 4.018 20 C -0.210 4.210 21 C -0.061 4.061 22 C -0.163 4.163 23 Cl -0.027 7.027 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.063 4.063 27 C -0.178 4.178 28 Br 0.058 6.942 29 C -0.080 4.080 30 H 0.237 0.763 31 H 0.148 0.852 32 H -0.199 1.199 33 H -0.225 1.225 34 H 0.148 0.852 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.212 0.788 41 H 0.197 0.803 42 H 0.188 0.812 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.181 0.819 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.856 3.540 -6.100 8.038 hybrid contribution -1.699 -1.186 -0.248 2.087 sum 2.157 2.354 -6.348 7.105 Atomic orbital electron populations 1.86613 1.18204 1.80362 1.50228 1.25313 0.83693 1.12118 0.98144 0.94185 0.90218 0.71636 0.77343 1.20255 0.99376 0.94208 0.97689 1.21249 0.94875 0.93579 0.95244 1.19867 1.02725 0.93696 0.97688 1.18357 0.79190 0.86365 0.81271 1.90811 1.39332 1.67997 1.47058 1.45828 1.52977 1.13024 1.23846 1.21045 0.94604 0.80898 0.99393 0.90965 1.21745 0.96812 0.95523 1.01300 1.21798 0.98705 0.95882 0.99853 1.22544 0.95030 0.78949 0.99901 0.88791 1.86353 1.63264 1.30970 1.40578 1.19698 0.90305 0.88736 0.87573 1.67489 1.17124 1.33497 1.08415 1.23199 0.89648 0.98454 0.90528 1.22422 1.03695 0.92029 1.02899 1.21817 0.91612 1.02636 0.90010 1.21173 1.07922 0.87869 0.99340 1.98384 1.89658 1.47574 1.67084 1.21544 0.94412 0.97341 1.01557 1.21709 0.98395 0.94028 1.00775 1.21472 0.93926 0.92371 0.98535 1.21738 1.03049 0.95770 0.97272 1.96864 1.65571 1.75315 1.56439 1.21379 0.94501 1.00563 0.91563 0.76286 0.85167 1.19921 1.22501 0.85250 0.74576 0.92886 0.89867 0.92159 0.92165 0.78782 0.80314 0.81206 0.89545 0.91113 0.88766 0.88657 0.81873 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.23 12.76 -148.98 -1.90 -3.13 16 2 C -0.08 0.13 2.82 71.24 0.20 0.33 16 3 Si 0.76 -2.68 29.78 68.60 2.04 -0.63 16 4 C -0.11 0.14 5.38 -19.90 -0.11 0.03 16 5 C -0.03 -0.08 9.15 22.53 0.21 0.13 16 6 C -0.14 -0.13 5.87 -20.09 -0.12 -0.24 16 7 C 0.56 2.41 7.74 86.79 0.67 3.08 16 8 O -0.57 -7.66 16.01 -3.89 -0.06 -7.72 16 9 N -0.71 1.73 5.03 -445.39 -2.24 -0.51 16 10 C 0.15 -0.14 2.46 44.99 0.11 -0.03 16 11 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 12 C -0.12 -0.10 5.49 30.59 0.17 0.07 16 13 C -0.12 -0.36 5.54 30.59 0.17 -0.20 16 14 C 0.09 0.15 2.38 30.59 0.07 0.23 16 15 H 0.09 0.12 6.99 -2.39 -0.02 0.11 16 16 O -0.30 -1.98 9.24 -90.09 -0.83 -2.82 16 17 C 0.32 1.86 7.45 84.83 0.63 2.49 16 18 N -0.54 -1.76 8.65 -308.88 -2.67 -4.43 16 19 C 0.14 -0.36 11.17 84.62 0.95 0.58 16 20 C -0.19 0.93 10.10 22.36 0.23 1.15 16 21 C -0.03 0.05 9.97 22.46 0.22 0.27 16 22 C -0.13 -0.58 6.36 22.51 0.14 -0.43 16 23 Cl -0.06 -0.32 28.54 -2.72 -0.08 -0.40 16 24 C -0.11 0.23 5.57 30.59 0.17 0.40 16 25 C -0.11 0.67 5.39 30.60 0.16 0.83 16 26 C -0.04 0.17 9.28 22.55 0.21 0.38 16 27 C -0.10 0.32 6.22 22.28 0.14 0.46 16 28 Br -0.03 0.10 33.69 -20.37 -0.69 -0.59 16 29 C -0.06 0.20 8.41 22.34 0.19 0.39 16 30 H 0.39 -1.43 8.70 -74.06 -0.64 -2.07 16 31 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H -0.27 0.14 7.11 99.48 0.71 0.85 16 33 H -0.30 -1.31 7.11 99.48 0.71 -0.61 16 34 H 0.13 0.80 7.65 -2.91 -0.02 0.77 16 35 H 0.42 -3.78 6.64 -92.71 -0.62 -4.39 16 36 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.20 -1.80 8.06 -2.91 -0.02 -1.82 16 41 H 0.18 -2.05 8.06 -2.91 -0.02 -2.08 16 42 H 0.17 -1.01 8.06 -2.91 -0.02 -1.04 16 43 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.09 -0.88 8.14 -2.39 -0.02 -0.89 16 46 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 47 H 0.16 -1.59 6.41 -2.91 -0.02 -1.61 16 48 H 0.16 -1.02 4.86 -2.91 -0.01 -1.03 16 Total: 0.00 -22.39 430.76 -2.19 -24.58 By element: Atomic # 1 Polarization: -14.09 SS G_CDS: -0.18 Total: -14.27 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.42 Total: 9.92 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -4.91 Total: -4.94 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -2.80 Total: -13.67 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.04 Total: -0.63 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.69 Total: -0.59 kcal Total: -22.39 -2.19 -24.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12496662_12335870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.212 kcal (2) G-P(sol) polarization free energy of solvation -22.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds