Wall clock time and date at job start Sun Mar 7 2021 03:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86297 * 109.46959 * 2 1 4 4 C 1.50697 * 109.46872 * 120.00193 * 2 1 3 5 5 C 1.38403 * 119.82961 * 65.00379 * 4 2 1 6 6 C 1.37897 * 120.17011 * 179.97438 * 5 4 2 7 7 C 1.39836 * 119.82156 * 359.97438 * 6 5 4 8 8 C 1.47210 * 120.16338 * 179.97438 * 7 6 5 9 9 C 1.34810 * 119.99760 * 180.02562 * 8 7 6 10 10 C 1.46430 * 119.99738 * 179.97438 * 9 8 7 11 11 O 1.21696 * 119.99912 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99913 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99930 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47696 * 34.99761 * 13 12 10 15 15 C 1.53002 * 109.47204 * 155.00105 * 13 12 10 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 13 18 18 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 19 19 O 1.42895 * 109.47503 * 180.02562 * 17 16 15 20 20 C 1.35702 * 117.00604 * 149.99972 * 19 17 16 21 21 N 1.32217 * 119.68726 * 0.02562 * 20 19 17 22 22 C 1.31978 * 121.65954 * 180.02562 * 21 20 19 23 23 C 1.38034 * 120.85891 * 359.97438 * 22 21 20 24 24 C 1.38827 * 119.30019 * 0.02562 * 23 22 21 25 25 C 1.38465 * 118.47536 * 359.73358 * 24 23 22 26 26 Cl 1.73598 * 120.46059 * 180.25899 * 25 24 23 27 27 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 28 28 C 1.52997 * 109.47244 * 274.99857 * 13 12 10 29 29 C 1.39832 * 119.66683 * 0.25510 * 7 6 5 30 30 C 1.37892 * 119.82180 * 359.50773 * 29 7 6 31 31 H 0.96702 * 113.99893 * 60.00003 * 1 2 3 32 32 H 1.09006 * 109.46744 * 240.00193 * 2 1 3 33 33 H 1.48501 * 110.00125 * 298.68250 * 3 2 1 34 34 H 1.48496 * 110.00209 * 59.99902 * 3 2 1 35 35 H 1.08001 * 119.91457 * 359.97086 * 5 4 2 36 36 H 1.07994 * 120.08232 * 180.02562 * 6 5 4 37 37 H 1.07996 * 120.00170 * 359.97438 * 8 7 6 38 38 H 1.07996 * 120.00069 * 359.97438 * 9 8 7 39 39 H 0.96998 * 119.99716 * 359.97438 * 12 10 9 40 40 H 1.08992 * 109.47063 * 59.99836 * 15 13 12 41 41 H 1.09004 * 109.46733 * 299.99549 * 15 13 12 42 42 H 1.09002 * 109.47398 * 59.99826 * 16 15 13 43 43 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 44 44 H 1.08001 * 119.57189 * 180.02562 * 22 21 20 45 45 H 1.08003 * 120.34734 * 180.02562 * 23 22 21 46 46 H 1.08000 * 120.76420 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.47486 * 180.02562 * 27 17 16 48 48 H 1.09002 * 109.46716 * 60.00091 * 27 17 16 49 49 H 1.09002 * 109.47153 * 300.00242 * 28 13 12 50 50 H 1.09001 * 109.47289 * 60.00326 * 28 13 12 51 51 H 1.07994 * 120.08594 * 179.74723 * 29 7 6 52 52 H 1.08004 * 119.91030 * 180.23085 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6824 -2.0619 1.3948 6 6 2.1392 -2.7192 2.5178 7 6 2.8560 -2.0165 3.4914 8 6 3.3466 -2.7105 4.6934 9 6 4.0368 -2.0297 5.6301 10 6 4.5244 -2.7199 6.8260 11 8 4.3061 -3.9079 6.9744 12 7 5.2149 -2.0395 7.7623 13 6 5.7022 -2.7298 8.9590 14 1 5.9903 -3.7484 8.6990 15 6 6.9150 -1.9842 9.5196 16 6 7.4243 -2.7056 10.7691 17 6 6.3164 -2.7430 11.8236 18 1 6.0283 -1.7245 12.0841 19 8 6.7922 -3.4162 12.9908 20 6 6.2654 -3.0327 14.1811 21 7 5.3542 -2.0753 14.2159 22 6 4.8165 -1.6717 15.3516 23 6 5.1893 -2.2402 16.5529 24 6 6.1431 -3.2488 16.5602 25 6 6.6850 -3.6538 15.3521 26 17 7.8765 -4.9152 15.3007 27 6 5.1036 -3.4885 11.2631 28 6 4.5941 -2.7667 10.0133 29 6 3.0992 -0.6502 3.3203 30 6 2.6401 -0.0082 2.1896 31 1 -0.3933 0.4417 -0.7651 32 1 1.7923 -0.5138 -0.8901 33 1 1.5878 2.4586 -1.2242 34 1 1.5614 2.4679 1.2084 35 1 1.1290 -2.6032 0.6418 36 1 1.9445 -3.7738 2.6444 37 1 3.1529 -3.7648 4.8251 38 1 4.2302 -0.9754 5.4986 39 1 5.3892 -1.0927 7.6438 40 1 6.6269 -0.9658 9.7797 41 1 7.7044 -1.9581 8.7685 42 1 7.7125 -3.7241 10.5086 43 1 8.2880 -2.1742 11.1687 44 1 4.0745 -0.8870 15.3408 45 1 4.7435 -1.9038 17.4774 46 1 6.4526 -3.7098 17.4866 47 1 4.3142 -3.5147 12.0142 48 1 5.3918 -4.5069 11.0026 49 1 4.3061 -1.7481 10.2734 50 1 3.7301 -3.2979 9.6140 51 1 3.6485 -0.1001 4.0699 52 1 2.8304 1.0463 2.0542 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12496662_12360594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:37:01 Heat of formation + Delta-G solvation = -29.182222 kcal Electronic energy + Delta-G solvation = -34814.794127 eV Core-core repulsion = 29965.222424 eV Total energy + Delta-G solvation = -4849.571703 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 415.138 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.89335 -41.12011 -40.51725 -39.76789 -38.10701 -37.82211 -37.61116 -35.16089 -34.92575 -33.41838 -32.24973 -31.96276 -31.69415 -31.26180 -29.65929 -27.10070 -25.24977 -24.52241 -24.18246 -23.95035 -23.72360 -22.69958 -21.76496 -21.29242 -20.29070 -19.59106 -18.65288 -18.55257 -18.22879 -17.61950 -17.36928 -17.20020 -16.87950 -16.66345 -16.18873 -16.08636 -15.96793 -15.79949 -15.41173 -15.25968 -15.11287 -14.80903 -14.73821 -14.42921 -14.35983 -14.22407 -14.02602 -13.96572 -13.87409 -13.58093 -13.38969 -13.34318 -13.12561 -13.01114 -12.96933 -12.74420 -12.30233 -12.27711 -12.21739 -12.08514 -12.04263 -11.72116 -11.55189 -11.33291 -11.29830 -11.03960 -10.78684 -10.72861 -10.49746 -10.13279 -9.97730 -9.47996 -9.23546 -4.92875 -0.54451 -0.11423 0.11871 0.39902 0.88807 1.03734 1.29416 1.60204 1.79950 1.94253 2.18200 2.24269 2.58604 2.77953 3.21511 3.37607 3.52309 3.56746 3.58948 3.70185 3.75518 3.84810 3.89527 3.93163 3.94372 4.00477 4.05386 4.14205 4.17300 4.22172 4.25713 4.29972 4.32624 4.36983 4.38891 4.40824 4.55999 4.59034 4.74407 4.80164 4.84191 4.88576 4.96668 4.97398 5.01090 5.02544 5.05019 5.09855 5.15047 5.20855 5.21776 5.38183 5.39100 5.48016 5.49838 5.60317 5.89780 6.11736 6.56236 6.56538 6.66088 7.23834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.092 4.092 3 Si 0.768 3.232 4 C -0.075 4.075 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.022 4.022 9 C -0.207 4.207 10 C 0.542 3.458 11 O -0.592 6.592 12 N -0.706 5.706 13 C 0.144 3.856 14 H 0.067 0.933 15 C -0.109 4.109 16 C -0.111 4.111 17 C 0.092 3.908 18 H 0.094 0.906 19 O -0.305 6.305 20 C 0.316 3.684 21 N -0.541 5.541 22 C 0.137 3.863 23 C -0.190 4.190 24 C -0.035 4.035 25 C -0.134 4.134 26 Cl -0.056 7.056 27 C -0.124 4.124 28 C -0.114 4.114 29 C -0.094 4.094 30 C -0.125 4.125 31 H 0.395 0.605 32 H 0.095 0.905 33 H -0.289 1.289 34 H -0.295 1.295 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.165 0.835 39 H 0.419 0.581 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.195 0.805 45 H 0.180 0.820 46 H 0.171 0.829 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.051 0.949 51 H 0.160 0.840 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 7.773 -0.003 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.200 4.200 3 Si 0.673 3.327 4 C -0.075 4.075 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.082 4.082 8 C -0.041 4.041 9 C -0.227 4.227 10 C 0.332 3.668 11 O -0.474 6.474 12 N -0.357 5.357 13 C 0.039 3.961 14 H 0.085 0.915 15 C -0.147 4.147 16 C -0.149 4.149 17 C 0.036 3.964 18 H 0.112 0.888 19 O -0.212 6.212 20 C 0.137 3.863 21 N -0.265 5.265 22 C -0.018 4.018 23 C -0.210 4.210 24 C -0.060 4.060 25 C -0.163 4.163 26 Cl -0.027 7.027 27 C -0.163 4.163 28 C -0.153 4.153 29 C -0.112 4.112 30 C -0.142 4.142 31 H 0.245 0.755 32 H 0.113 0.887 33 H -0.216 1.216 34 H -0.222 1.222 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.183 0.817 39 H 0.257 0.743 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.212 0.788 45 H 0.197 0.803 46 H 0.188 0.812 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.177 0.823 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.813 7.537 -0.224 7.755 hybrid contribution -1.135 -0.742 0.100 1.359 sum 0.678 6.795 -0.125 6.830 Atomic orbital electron populations 1.86549 1.18557 1.80752 1.51065 1.25109 0.84078 1.12188 0.98610 0.94109 0.90229 0.71925 0.76450 1.19689 0.97885 0.94266 0.95677 1.21101 0.99143 0.94235 0.98147 1.21618 0.96478 1.00746 0.93291 1.19119 1.00133 0.94250 0.94659 1.22346 0.91443 0.99528 0.90829 1.23023 1.03455 1.02170 0.94067 1.18764 0.77654 0.86307 0.84027 1.90821 1.59196 1.17608 1.79819 1.45783 1.55608 1.14087 1.20220 1.20966 0.93844 0.97151 0.84101 0.91498 1.21686 0.96588 0.99938 0.96517 1.21554 0.97287 1.02458 0.93604 1.22533 0.94537 0.97108 0.82183 0.88805 1.86351 1.61694 1.60295 1.12859 1.19707 0.90327 0.90257 0.86046 1.67487 1.11744 1.14497 1.32814 1.23203 0.95593 0.96852 0.86194 1.22423 0.99316 0.97879 1.01404 1.21816 0.93116 0.94660 0.96457 1.21176 1.01737 0.99384 0.94023 1.98383 1.55353 1.50158 1.98805 1.21813 0.97357 0.99664 0.97429 1.21750 0.98033 1.01535 0.93986 1.21635 0.98595 0.93205 0.97722 1.21171 0.98882 1.00389 0.93791 0.75456 0.88743 1.21584 1.22227 0.85135 0.84447 0.86066 0.81726 0.74280 0.88838 0.88810 0.91231 0.89590 0.78778 0.80288 0.81179 0.92217 0.92281 0.89947 0.93061 0.82295 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.08 12.81 -148.98 -1.91 -2.99 16 2 C -0.09 0.12 2.79 71.23 0.20 0.31 16 3 Si 0.77 -2.51 29.83 68.60 2.05 -0.46 16 4 C -0.08 -0.11 5.39 -19.79 -0.11 -0.21 16 5 C -0.11 -0.26 9.66 22.23 0.21 -0.04 16 6 C -0.10 -0.20 9.80 22.58 0.22 0.02 16 7 C -0.08 -0.09 5.87 -20.15 -0.12 -0.21 16 8 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 9 C -0.21 0.17 9.41 23.62 0.22 0.39 16 10 C 0.54 2.42 7.71 86.38 0.67 3.09 16 11 O -0.59 -8.49 15.89 -4.33 -0.07 -8.56 16 12 N -0.71 1.42 5.07 -446.77 -2.27 -0.85 16 13 C 0.14 0.02 2.45 44.99 0.11 0.13 16 14 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 15 C -0.11 0.55 5.39 30.60 0.16 0.72 16 16 C -0.11 0.13 5.57 30.59 0.17 0.30 16 17 C 0.09 0.23 2.38 30.59 0.07 0.31 16 18 H 0.09 0.20 6.98 -2.39 -0.02 0.18 16 19 O -0.30 -2.19 9.24 -90.22 -0.83 -3.02 16 20 C 0.32 2.02 7.45 84.83 0.63 2.65 16 21 N -0.54 -2.04 8.65 -308.86 -2.67 -4.71 16 22 C 0.14 -0.31 11.17 84.62 0.95 0.64 16 23 C -0.19 0.87 10.10 22.36 0.23 1.10 16 24 C -0.03 0.04 9.97 22.47 0.22 0.26 16 25 C -0.13 -0.63 6.36 22.51 0.14 -0.49 16 26 Cl -0.06 -0.34 28.54 -2.72 -0.08 -0.42 16 27 C -0.12 -0.49 5.55 30.61 0.17 -0.32 16 28 C -0.11 -0.22 5.50 30.61 0.17 -0.06 16 29 C -0.09 0.18 9.41 22.57 0.21 0.39 16 30 C -0.13 0.12 8.65 22.23 0.19 0.31 16 31 H 0.39 -2.39 8.74 -74.06 -0.65 -3.03 16 32 H 0.09 -0.47 7.96 -2.38 -0.02 -0.48 16 33 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 34 H -0.29 -0.99 7.04 99.48 0.70 -0.29 16 35 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 37 H 0.12 0.59 7.52 -2.91 -0.02 0.57 16 38 H 0.17 -1.41 6.07 -2.91 -0.02 -1.43 16 39 H 0.42 -3.89 8.58 -92.71 -0.80 -4.69 16 40 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.20 -1.73 8.06 -2.91 -0.02 -1.75 16 45 H 0.18 -2.01 8.06 -2.91 -0.02 -2.04 16 46 H 0.17 -0.98 8.06 -2.91 -0.02 -1.00 16 47 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 50 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.16 -1.32 6.17 -2.91 -0.02 -1.34 16 52 H 0.15 -0.70 4.84 -2.91 -0.01 -0.72 16 Total: 0.00 -26.20 444.10 -1.26 -27.45 By element: Atomic # 1 Polarization: -15.48 SS G_CDS: -0.43 Total: -15.92 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.96 Total: 9.47 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -4.94 Total: -5.56 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.81 Total: -14.57 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.05 Total: -0.46 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -26.20 -1.26 -27.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12496662_12360594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.730 kcal (2) G-P(sol) polarization free energy of solvation -26.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds