Wall clock time and date at job start Sat Mar 6 2021 17:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.46847 * 2 1 4 4 C 1.50698 * 109.47158 * 120.00124 * 2 1 3 5 5 C 1.38184 * 119.84432 * 15.00320 * 4 2 1 6 6 C 1.38310 * 120.14697 * 180.02562 * 5 4 2 7 7 F 1.35101 * 120.08825 * 180.02562 * 6 5 4 8 8 C 1.39805 * 119.83241 * 359.97438 * 6 5 4 9 9 C 1.47695 * 120.15668 * 179.72518 * 8 6 5 10 10 O 1.21576 * 119.99954 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99865 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99711 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47618 * 34.99649 * 12 11 9 14 14 C 1.53000 * 109.47135 * 155.00117 * 12 11 9 15 15 C 1.53005 * 109.47017 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47102 * 299.99902 * 15 14 12 17 17 H 1.09007 * 109.47073 * 299.99933 * 16 15 14 18 18 O 1.42899 * 109.47128 * 180.02562 * 16 15 14 19 19 C 1.35700 * 116.99779 * 149.99958 * 18 16 15 20 20 N 1.32214 * 119.69716 * 359.97438 * 19 18 16 21 21 C 1.31982 * 121.66445 * 179.97438 * 20 19 18 22 22 C 1.38037 * 120.85473 * 0.02562 * 21 20 19 23 23 C 1.38828 * 119.30213 * 359.97438 * 22 21 20 24 24 C 1.38464 * 118.47249 * 359.72755 * 23 22 21 25 25 Cl 1.73597 * 120.45328 * 180.26103 * 24 23 22 26 26 C 1.53000 * 109.47104 * 60.00152 * 16 15 14 27 27 C 1.52999 * 109.46933 * 274.99988 * 12 11 9 28 28 C 1.39660 * 119.68884 * 0.02562 * 8 6 5 29 29 C 1.38070 * 119.85199 * 359.97438 * 28 8 6 30 30 F 1.35091 * 119.91742 * 179.97438 * 29 28 8 31 31 H 0.96691 * 114.00301 * 60.00263 * 1 2 3 32 32 H 1.09005 * 109.46692 * 239.99906 * 2 1 3 33 33 H 1.48495 * 110.00019 * 60.00417 * 3 2 1 34 34 H 1.48507 * 109.99675 * 181.32044 * 3 2 1 35 35 H 1.08004 * 119.92945 * 0.04016 * 5 4 2 36 36 H 0.96998 * 120.00173 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.47231 * 299.99182 * 14 12 11 38 38 H 1.08995 * 109.46975 * 60.00036 * 14 12 11 39 39 H 1.09002 * 109.47471 * 60.00093 * 15 14 12 40 40 H 1.09003 * 109.46729 * 180.02562 * 15 14 12 41 41 H 1.07994 * 119.56820 * 180.02562 * 21 20 19 42 42 H 1.07996 * 120.34397 * 179.97438 * 22 21 20 43 43 H 1.07994 * 120.75967 * 180.02562 * 23 22 21 44 44 H 1.08990 * 109.47300 * 60.00048 * 26 16 15 45 45 H 1.09003 * 109.46719 * 180.02562 * 26 16 15 46 46 H 1.09000 * 109.47383 * 299.99638 * 27 12 11 47 47 H 1.08997 * 109.47867 * 60.00211 * 27 12 11 48 48 H 1.08004 * 120.07517 * 179.97438 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.0691 -1.4963 1.9710 6 6 1.5233 -2.1507 3.1016 7 9 0.6794 -2.9191 3.8244 8 6 2.8584 -2.0158 3.4940 9 6 3.3496 -2.7066 4.7036 10 8 2.5925 -3.3948 5.3603 11 7 4.6371 -2.5739 5.0793 12 6 5.1245 -3.2595 6.2787 13 1 4.6221 -4.2218 6.3767 14 6 6.6337 -3.4817 6.1614 15 6 7.1427 -4.1972 7.4144 16 6 6.8477 -3.3397 8.6467 17 1 7.3502 -2.3773 8.5484 18 8 7.3237 -4.0076 9.8169 19 6 7.7271 -3.2268 10.8508 20 7 7.6670 -1.9106 10.7399 21 6 8.0486 -1.1146 11.7210 22 6 8.5285 -1.6327 12.9071 23 6 8.6078 -3.0097 13.0643 24 6 8.1940 -3.8183 12.0192 25 17 8.2646 -5.5469 12.1629 26 6 5.3385 -3.1175 8.7640 27 6 4.8294 -2.4025 7.5113 28 6 3.7238 -1.2198 2.7405 29 6 3.2566 -0.5724 1.6141 30 9 4.0925 0.1983 0.8845 31 1 -0.3933 0.4416 -0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5615 2.4678 1.2085 34 1 3.5346 1.7703 -0.0322 35 1 0.0382 -1.5999 1.6661 36 1 5.2413 -2.0252 4.5551 37 1 6.8439 -4.0924 5.2834 38 1 7.1361 -2.5194 6.0636 39 1 6.6404 -5.1596 7.5128 40 1 8.2180 -4.3551 7.3310 41 1 7.9846 -0.0440 11.5942 42 1 8.8389 -0.9736 13.7043 43 1 8.9792 -3.4404 13.9824 44 1 4.8362 -4.0797 8.8623 45 1 5.1284 -2.5061 9.6417 46 1 5.3319 -1.4402 7.4136 47 1 3.7543 -2.2441 7.5950 48 1 4.7563 -1.1110 3.0382 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12496662_12360598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:09:07 Heat of formation + Delta-G solvation = -119.409665 kcal Electronic energy + Delta-G solvation = -37917.776515 eV Core-core repulsion = 32409.148065 eV Total energy + Delta-G solvation = -5508.628450 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.104 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.60627 -50.20513 -41.95310 -41.51780 -40.28529 -39.65124 -38.11461 -37.63473 -37.61572 -35.24339 -33.43926 -33.35403 -32.01389 -31.58875 -31.49009 -29.82738 -27.80262 -25.26524 -24.54099 -24.35299 -24.09177 -23.73728 -22.80119 -21.82577 -21.26601 -19.81251 -19.57363 -19.10079 -18.58582 -18.26731 -18.01842 -17.65413 -17.40123 -17.29879 -17.16112 -16.94125 -16.81701 -16.22345 -16.07687 -15.96723 -15.89313 -15.80899 -15.68914 -15.35128 -15.24450 -14.83687 -14.75786 -14.45546 -14.31619 -14.19771 -14.00149 -13.71793 -13.42788 -13.38406 -13.21185 -13.11408 -13.09374 -13.01573 -12.81556 -12.54183 -12.31807 -12.25160 -12.11796 -11.74510 -11.60194 -11.40999 -11.24694 -11.05785 -10.80897 -10.75453 -10.33048 -10.22810 -9.76385 -9.50144 -4.94435 -0.88141 -0.40221 -0.13455 0.09823 1.01911 1.11078 1.44428 1.66391 1.67646 1.87641 1.96957 2.18408 2.56509 2.63139 2.74389 2.92117 3.11076 3.19103 3.37614 3.49842 3.52858 3.59589 3.66837 3.83479 3.85597 3.89342 3.96153 4.00739 4.10353 4.11629 4.19650 4.23589 4.24789 4.32124 4.35730 4.39699 4.48957 4.54405 4.62255 4.69435 4.74349 4.77440 4.84768 4.92399 4.97690 4.99037 5.00413 5.10444 5.14444 5.28054 5.31107 5.36358 6.09126 6.24242 6.63818 6.81050 6.92280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.773 3.227 4 C -0.061 4.061 5 C -0.115 4.115 6 C 0.136 3.864 7 F -0.126 7.126 8 C -0.161 4.161 9 C 0.560 3.440 10 O -0.561 6.561 11 N -0.701 5.701 12 C 0.145 3.855 13 H 0.072 0.928 14 C -0.111 4.111 15 C -0.110 4.110 16 C 0.092 3.908 17 H 0.095 0.905 18 O -0.304 6.304 19 C 0.316 3.684 20 N -0.541 5.541 21 C 0.137 3.863 22 C -0.190 4.190 23 C -0.035 4.035 24 C -0.133 4.133 25 Cl -0.055 7.055 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.067 4.067 29 C 0.058 3.942 30 F -0.114 7.114 31 H 0.412 0.588 32 H 0.119 0.881 33 H -0.313 1.313 34 H -0.253 1.253 35 H 0.167 0.833 36 H 0.417 0.583 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.195 0.805 42 H 0.180 0.820 43 H 0.171 0.829 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 7.286 -5.039 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.190 4.190 3 Si 0.676 3.324 4 C -0.062 4.062 5 C -0.133 4.133 6 C 0.116 3.884 7 F -0.105 7.105 8 C -0.166 4.166 9 C 0.347 3.653 10 O -0.440 6.440 11 N -0.353 5.353 12 C 0.040 3.960 13 H 0.091 0.909 14 C -0.148 4.148 15 C -0.148 4.148 16 C 0.036 3.964 17 H 0.113 0.887 18 O -0.211 6.211 19 C 0.137 3.863 20 N -0.266 5.266 21 C -0.019 4.019 22 C -0.210 4.210 23 C -0.060 4.060 24 C -0.163 4.163 25 Cl -0.027 7.027 26 C -0.162 4.162 27 C -0.155 4.155 28 C -0.086 4.086 29 C 0.038 3.962 30 F -0.092 7.092 31 H 0.265 0.735 32 H 0.136 0.864 33 H -0.242 1.242 34 H -0.179 1.179 35 H 0.185 0.815 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.212 0.788 42 H 0.197 0.803 43 H 0.188 0.812 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.835 6.953 -4.435 9.560 hybrid contribution 0.019 -1.008 1.112 1.501 sum 4.853 5.945 -3.323 8.363 Atomic orbital electron populations 1.86340 1.16204 1.82588 1.51976 1.24823 0.86994 1.10923 0.96227 0.94860 0.78099 0.73043 0.86388 1.19830 0.91640 0.96512 0.98248 1.20866 1.02763 0.96760 0.92936 1.18036 0.87168 0.92041 0.91183 1.91588 1.69946 1.72424 1.76508 1.19823 0.93345 1.04374 0.99023 1.18025 0.82952 0.80505 0.83811 1.90872 1.56571 1.40914 1.55691 1.45763 1.09736 1.51241 1.28608 1.21080 0.95787 0.95755 0.83337 0.90936 1.21710 0.91934 1.03116 0.98083 1.21546 1.02965 0.98975 0.91359 1.22539 0.93925 0.97588 0.82372 0.88729 1.86354 1.76659 1.34466 1.23667 1.19701 0.91615 0.87701 0.87326 1.67481 1.22264 1.02532 1.34289 1.23199 0.90129 1.00905 0.87620 1.22425 1.03151 0.94799 1.00632 1.21818 0.93237 0.93630 0.97364 1.21177 1.11953 0.87032 0.96127 1.98384 1.97204 1.09211 1.97883 1.21789 0.95203 1.00963 0.98271 1.21746 1.00920 0.99626 0.93174 1.21312 1.01711 0.93691 0.91894 1.17298 0.87876 0.97408 0.93570 1.91525 1.70586 1.71384 1.75716 0.73502 0.86379 1.24154 1.17918 0.81526 0.74428 0.88587 0.88643 0.91108 0.89424 0.78796 0.80278 0.81169 0.92163 0.92104 0.89753 0.93003 0.79566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.55 11.47 -148.98 -1.71 0.84 16 2 C -0.08 0.34 2.95 71.24 0.21 0.55 16 3 Si 0.77 -3.30 30.72 68.60 2.11 -1.20 16 4 C -0.06 -0.08 5.16 -19.78 -0.10 -0.18 16 5 C -0.11 -0.47 9.33 22.27 0.21 -0.27 16 6 C 0.14 1.08 7.28 22.67 0.17 1.24 16 7 F -0.13 -1.75 15.55 44.97 0.70 -1.05 16 8 C -0.16 -0.71 5.88 -20.06 -0.12 -0.83 16 9 C 0.56 3.92 7.73 86.74 0.67 4.59 16 10 O -0.56 -9.29 15.00 -3.95 -0.06 -9.35 16 11 N -0.70 0.76 5.03 -445.55 -2.24 -1.48 16 12 C 0.14 0.01 2.45 44.99 0.11 0.13 16 13 H 0.07 0.40 7.58 -2.39 -0.02 0.38 16 14 C -0.11 0.60 5.39 30.60 0.16 0.76 16 15 C -0.11 0.17 5.57 30.60 0.17 0.34 16 16 C 0.09 0.21 2.38 30.59 0.07 0.28 16 17 H 0.09 0.17 6.98 -2.38 -0.02 0.15 16 18 O -0.30 -2.13 9.24 -90.20 -0.83 -2.96 16 19 C 0.32 2.00 7.45 84.83 0.63 2.63 16 20 N -0.54 -2.01 8.65 -308.87 -2.67 -4.68 16 21 C 0.14 -0.31 11.17 84.62 0.95 0.64 16 22 C -0.19 0.86 10.10 22.36 0.23 1.09 16 23 C -0.03 0.04 9.97 22.46 0.22 0.26 16 24 C -0.13 -0.63 6.36 22.51 0.14 -0.48 16 25 Cl -0.06 -0.34 28.54 -2.72 -0.08 -0.42 16 26 C -0.12 -0.46 5.54 30.58 0.17 -0.30 16 27 C -0.12 -0.22 5.49 30.58 0.17 -0.05 16 28 C -0.07 0.12 9.51 22.57 0.21 0.34 16 29 C 0.06 0.01 6.65 22.33 0.15 0.16 16 30 F -0.11 -0.04 12.84 44.97 0.58 0.53 16 31 H 0.41 -6.12 8.74 -74.06 -0.65 -6.77 16 32 H 0.12 -1.05 7.96 -2.38 -0.02 -1.07 16 33 H -0.31 -1.67 7.11 99.48 0.71 -0.96 16 34 H -0.25 0.03 5.39 99.48 0.54 0.56 16 35 H 0.17 0.53 7.12 -2.91 -0.02 0.51 16 36 H 0.42 -3.55 6.63 -92.71 -0.62 -4.17 16 37 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.07 0.03 8.14 -2.39 -0.02 0.02 16 40 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.20 -1.71 8.06 -2.91 -0.02 -1.74 16 42 H 0.18 -2.01 8.06 -2.91 -0.02 -2.03 16 43 H 0.17 -0.97 8.06 -2.91 -0.02 -0.99 16 44 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.19 -1.84 6.41 -2.91 -0.02 -1.86 16 Total: 0.00 -27.60 416.65 -0.12 -27.72 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -0.34 Total: -18.87 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 4.42 Total: 10.91 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: -4.91 Total: -6.16 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -2.60 Total: -11.47 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 1.28 Total: -0.52 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.11 Total: -1.20 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -27.60 -0.12 -27.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12496662_12360598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.686 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds