Wall clock time and date at job start Sat Mar 6 2021 19:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 116.99850 * 2 1 4 4 C 1.38398 * 120.11746 * 0.23085 * 3 2 1 5 5 C 1.38731 * 120.03049 * 180.27615 * 4 3 2 6 6 O 1.35712 * 119.86538 * 179.76634 * 5 4 3 7 7 C 1.42904 * 117.00046 * 359.97438 * 6 5 4 8 8 C 1.39147 * 120.27248 * 359.73831 * 5 4 3 9 9 C 1.50700 * 119.88122 * 180.02562 * 8 5 4 10 10 O 1.42902 * 109.46961 * 284.98174 * 9 8 5 11 11 Si 1.86296 * 109.47209 * 164.98240 * 9 8 5 12 12 C 1.37580 * 120.23768 * 0.02562 * 8 5 4 13 13 C 1.39817 * 119.97082 * 359.97438 * 12 8 5 14 14 C 1.47296 * 120.14060 * 179.97438 * 13 12 8 15 15 O 1.21623 * 120.00021 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99903 * 359.97438 * 14 13 12 17 17 C 1.46506 * 119.99873 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.84609 * 25.34032 * 17 16 14 19 19 C 1.53781 * 113.61030 * 156.53323 * 17 16 14 20 20 C 1.53775 * 87.08199 * 89.11750 * 19 17 16 21 21 H 1.08998 * 113.61300 * 270.79642 * 20 19 17 22 22 S 1.81397 * 113.61417 * 139.97904 * 20 19 17 23 23 C 1.81407 * 103.00160 * 174.99866 * 22 20 19 24 24 C 1.53778 * 113.61561 * 254.13831 * 17 16 14 25 25 H 1.08992 * 109.47424 * 300.00377 * 1 2 3 26 26 H 1.09006 * 109.46680 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99005 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46318 * 299.99962 * 7 6 5 30 30 H 1.08997 * 109.46810 * 59.99877 * 7 6 5 31 31 H 1.08994 * 109.46811 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47032 * 44.97984 * 9 8 5 33 33 H 0.96706 * 114.00140 * 60.00247 * 10 9 8 34 34 H 1.48492 * 110.00064 * 300.00040 * 11 9 8 35 35 H 1.48502 * 109.99909 * 61.32197 * 11 9 8 36 36 H 1.08006 * 120.01447 * 180.02562 * 12 8 5 37 37 H 0.96995 * 120.00018 * 0.27689 * 16 14 13 38 38 H 1.09007 * 113.61020 * 203.66504 * 19 17 16 39 39 H 1.09001 * 113.61802 * 334.56775 * 19 17 16 40 40 H 1.09004 * 109.46672 * 300.00185 * 23 22 20 41 41 H 1.09005 * 109.46770 * 59.99650 * 23 22 20 42 42 H 1.09001 * 109.47175 * 180.02562 * 23 22 20 43 43 H 1.09000 * 113.61266 * 25.43594 * 24 17 16 44 44 H 1.08994 * 113.61649 * 156.33709 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2934 2.3710 0.0048 5 6 1.9251 3.6062 -0.0010 6 8 1.1849 4.7437 -0.0010 7 6 -0.2361 4.5931 0.0045 8 6 3.3144 3.6836 -0.0062 9 6 3.9913 5.0299 -0.0119 10 8 3.8895 5.6088 -1.3144 11 14 5.7876 4.8238 0.4373 12 6 4.0723 2.5353 -0.0061 13 6 3.4462 1.2852 -0.0003 14 6 4.2539 0.0534 -0.0008 15 8 3.7066 -1.0327 0.0038 16 7 5.5995 0.1300 -0.0074 17 6 6.4029 -1.0951 -0.0073 18 1 5.8737 -1.9482 -0.4320 19 6 7.8188 -0.9032 -0.5757 20 6 8.2601 -0.5503 0.8545 21 1 8.1715 0.5103 1.0896 22 16 9.8757 -1.2396 1.3073 23 6 10.1741 -0.5339 2.9517 24 6 7.0691 -1.3948 1.3459 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2149 2.3165 0.0082 29 1 -0.5464 4.0417 -0.8831 30 1 -0.5400 4.0460 0.8969 31 1 -0.7057 5.5767 0.0034 32 1 3.5077 5.6828 0.7147 33 1 2.9802 5.7453 -1.6142 34 1 5.9071 4.2227 1.7898 35 1 6.4656 3.9614 -0.5636 36 1 5.1504 2.5996 -0.0097 37 1 6.0359 0.9962 -0.0077 38 1 8.2649 -1.8222 -0.9561 39 1 7.8994 -0.0712 -1.2753 40 1 10.1870 0.5539 2.8833 41 1 9.3803 -0.8459 3.6304 42 1 11.1345 -0.8852 3.3291 43 1 6.5448 -0.9595 2.1966 44 1 7.3106 -2.4479 1.4900 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525166_12297780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:41:25 Heat of formation + Delta-G solvation = -75.499201 kcal Electronic energy + Delta-G solvation = -28105.799733 eV Core-core repulsion = 24118.357514 eV Total energy + Delta-G solvation = -3987.442219 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.20013 -41.02520 -40.16730 -38.98406 -38.38132 -36.97758 -34.29290 -32.28826 -31.72604 -29.91679 -29.20313 -28.41127 -26.84634 -26.48864 -26.08960 -24.56657 -23.01554 -21.66656 -20.69333 -20.07806 -18.87623 -18.57860 -17.86095 -17.66433 -17.35086 -17.17473 -16.77625 -16.70939 -16.43034 -16.00417 -15.88402 -15.77110 -15.42697 -15.36829 -15.11910 -14.55349 -14.34544 -14.26638 -14.14435 -14.03369 -13.79792 -13.61364 -13.56002 -13.37730 -12.90471 -12.73846 -12.63258 -12.51705 -12.24566 -11.86735 -11.78231 -11.60272 -11.37130 -11.12274 -10.87293 -10.74102 -10.11715 -10.01602 -9.23759 -8.63597 -4.91281 -0.33006 0.02364 0.72761 1.28723 1.55037 1.56972 1.75622 1.83009 1.86760 2.02389 2.06372 2.59522 3.27005 3.30752 3.34212 3.42537 3.59170 3.62805 3.71313 3.82986 3.85600 3.90584 3.94712 3.99075 4.04477 4.06469 4.13414 4.17934 4.20886 4.30582 4.36065 4.44929 4.46718 4.63495 4.66746 4.69866 4.74756 4.75810 4.82330 4.87205 4.93733 4.99122 5.17394 5.52187 5.84264 6.17702 6.45177 6.56773 7.27276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.234 3.766 4 C -0.308 4.308 5 C 0.210 3.790 6 O -0.306 6.306 7 C 0.022 3.978 8 C -0.188 4.188 9 C -0.068 4.068 10 O -0.535 6.535 11 Si 0.740 3.260 12 C -0.012 4.012 13 C -0.206 4.206 14 C 0.569 3.431 15 O -0.512 6.512 16 N -0.718 5.718 17 C 0.127 3.873 18 H 0.114 0.886 19 C -0.116 4.116 20 C -0.087 4.087 21 H 0.101 0.899 22 S -0.249 6.249 23 C -0.123 4.123 24 C -0.138 4.138 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.366 0.634 34 H -0.247 1.247 35 H -0.250 1.250 36 H 0.134 0.866 37 H 0.395 0.605 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 5.097 1.540 6.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.183 6.183 3 C 0.184 3.816 4 C -0.327 4.327 5 C 0.163 3.837 6 O -0.218 6.218 7 C -0.072 4.072 8 C -0.189 4.189 9 C -0.177 4.177 10 O -0.341 6.341 11 Si 0.638 3.362 12 C -0.030 4.030 13 C -0.210 4.210 14 C 0.357 3.643 15 O -0.387 6.387 16 N -0.371 5.371 17 C 0.020 3.980 18 H 0.132 0.868 19 C -0.156 4.156 20 C -0.216 4.216 21 H 0.120 0.880 22 S -0.021 6.021 23 C -0.291 4.291 24 C -0.179 4.179 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.165 0.835 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.214 0.786 34 H -0.171 1.171 35 H -0.175 1.175 36 H 0.151 0.849 37 H 0.230 0.770 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.240 3.030 1.234 3.499 hybrid contribution -2.697 0.780 0.630 2.877 sum -3.937 3.810 1.864 5.787 Atomic orbital electron populations 1.23261 0.78087 1.04996 1.01345 1.86408 1.21298 1.24885 1.85732 1.18688 0.90506 0.84535 0.87879 1.21296 1.01171 0.91405 1.18876 1.18714 0.90224 0.84881 0.89917 1.86040 1.19955 1.28706 1.87114 1.23236 0.77275 1.04844 1.01879 1.19447 0.90492 0.96724 1.12246 1.25090 1.13553 0.90395 0.88651 1.86713 1.32137 1.83411 1.31800 0.92873 0.75928 0.88388 0.78962 1.20750 0.98811 0.90328 0.93102 1.19055 0.90808 0.93460 1.17712 1.17772 0.81559 0.88626 0.76307 1.90855 1.71231 1.28527 1.48114 1.45602 1.05906 1.08878 1.76694 1.21778 0.90811 0.88540 0.96909 0.86836 1.23182 0.94209 1.03973 0.94220 1.24856 0.93923 1.01895 1.00900 0.88030 1.86927 1.26041 1.66397 1.22723 1.23381 1.05960 1.03633 0.96150 1.23828 0.94650 1.01361 0.98079 0.92359 0.92332 0.87325 0.83538 0.92052 0.92114 0.87257 0.90588 0.78608 1.17091 1.17514 0.84856 0.77016 0.87378 0.89718 0.90511 0.90398 0.87985 0.90578 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.98 16 2 O -0.27 -1.04 8.56 -40.61 -0.35 -1.39 16 3 C 0.23 0.74 6.70 -38.73 -0.26 0.48 16 4 C -0.31 -0.26 8.01 -39.34 -0.31 -0.57 16 5 C 0.21 0.22 6.62 -39.06 -0.26 -0.04 16 6 O -0.31 0.13 9.36 -18.84 -0.18 -0.05 16 7 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 8 C -0.19 -0.29 5.27 -104.52 -0.55 -0.84 16 9 C -0.07 -0.03 2.32 36.01 0.08 0.06 16 10 O -0.54 -0.60 12.65 -35.23 -0.45 -1.05 16 11 Si 0.74 -0.70 30.40 -169.99 -5.17 -5.86 16 12 C -0.01 -0.02 8.14 -39.23 -0.32 -0.34 16 13 C -0.21 -0.71 5.89 -104.83 -0.62 -1.33 16 14 C 0.57 2.54 7.76 -12.58 -0.10 2.44 16 15 O -0.51 -3.98 14.77 -16.67 -0.25 -4.23 16 16 N -0.72 -1.11 5.21 -54.13 -0.28 -1.39 16 17 C 0.13 0.12 4.30 -67.12 -0.29 -0.17 16 18 H 0.11 0.25 7.50 -51.93 -0.39 -0.13 16 19 C -0.12 0.05 7.41 -25.92 -0.19 -0.14 16 20 C -0.09 0.01 4.17 -25.78 -0.11 -0.10 16 21 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 22 S -0.25 -0.35 22.18 -107.50 -2.38 -2.74 16 23 C -0.12 0.07 10.76 101.05 1.09 1.16 16 24 C -0.14 -0.05 7.49 -25.78 -0.19 -0.24 16 25 H 0.06 -0.13 7.65 -51.93 -0.40 -0.53 16 26 H 0.06 -0.13 7.67 -51.93 -0.40 -0.53 16 27 H 0.11 -0.21 8.14 -51.93 -0.42 -0.63 16 28 H 0.15 -0.25 4.50 -52.49 -0.24 -0.49 16 29 H 0.06 -0.26 7.65 -51.93 -0.40 -0.66 16 30 H 0.06 -0.25 7.65 -51.93 -0.40 -0.64 16 31 H 0.11 -0.56 8.14 -51.93 -0.42 -0.98 16 32 H 0.08 -0.03 7.82 -51.93 -0.41 -0.44 16 33 H 0.37 -0.30 8.59 45.56 0.39 0.09 16 34 H -0.25 -0.03 7.11 56.52 0.40 0.38 16 35 H -0.25 -0.13 6.80 56.52 0.38 0.25 16 36 H 0.13 0.05 3.24 -52.48 -0.17 -0.12 16 37 H 0.39 -0.13 6.72 -40.82 -0.27 -0.40 16 38 H 0.11 -0.05 8.10 -51.93 -0.42 -0.47 16 39 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 40 H 0.08 -0.10 8.14 -51.92 -0.42 -0.52 16 41 H 0.08 -0.08 8.14 -51.92 -0.42 -0.50 16 42 H 0.10 -0.12 8.14 -51.92 -0.42 -0.54 16 43 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 44 H 0.11 0.04 8.10 -51.93 -0.42 -0.38 16 LS Contribution 371.79 15.07 5.60 5.60 Total: 0.00 -7.87 371.79 -9.60 -17.47 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: -6.11 Total: -8.62 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.05 Total: 2.25 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -0.28 Total: -1.39 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -1.22 Total: -6.71 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.17 Total: -5.86 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.38 Total: -2.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -7.87 -9.60 -17.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_12297780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.027 kcal (2) G-P(sol) polarization free energy of solvation -7.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds