Wall clock time and date at job start Sat Mar 6 2021 19:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35664 * 116.99850 * 2 1 4 4 C 1.38398 * 120.11746 * 0.23085 * 3 2 1 5 5 C 1.38731 * 120.03049 * 180.27615 * 4 3 2 6 6 O 1.35712 * 119.86538 * 179.76634 * 5 4 3 7 7 C 1.42904 * 117.00046 * 359.97438 * 6 5 4 8 8 C 1.39147 * 120.27248 * 359.73831 * 5 4 3 9 9 C 1.50700 * 119.88122 * 180.02562 * 8 5 4 10 10 O 1.42902 * 109.46961 * 284.98174 * 9 8 5 11 11 Si 1.86296 * 109.47209 * 164.98240 * 9 8 5 12 12 C 1.37580 * 120.23768 * 0.02562 * 8 5 4 13 13 C 1.39817 * 119.97082 * 359.97438 * 12 8 5 14 14 C 1.47296 * 120.14060 * 179.97438 * 13 12 8 15 15 O 1.21623 * 120.00021 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99903 * 359.97438 * 14 13 12 17 17 C 1.46506 * 119.99873 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.84609 * 25.34032 * 17 16 14 19 19 C 1.53781 * 113.61030 * 156.53323 * 17 16 14 20 20 C 1.53775 * 87.08199 * 89.11750 * 19 17 16 21 21 H 1.08998 * 113.61300 * 270.79642 * 20 19 17 22 22 S 1.81397 * 113.61417 * 139.97904 * 20 19 17 23 23 C 1.81407 * 103.00160 * 174.99866 * 22 20 19 24 24 C 1.53778 * 113.61561 * 254.13831 * 17 16 14 25 25 H 1.08992 * 109.47424 * 300.00377 * 1 2 3 26 26 H 1.09006 * 109.46680 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99005 * 359.97438 * 4 3 2 29 29 H 1.09001 * 109.46318 * 299.99962 * 7 6 5 30 30 H 1.08997 * 109.46810 * 59.99877 * 7 6 5 31 31 H 1.08994 * 109.46811 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47032 * 44.97984 * 9 8 5 33 33 H 0.96706 * 114.00140 * 60.00247 * 10 9 8 34 34 H 1.48492 * 110.00064 * 300.00040 * 11 9 8 35 35 H 1.48502 * 109.99909 * 61.32197 * 11 9 8 36 36 H 1.08006 * 120.01447 * 180.02562 * 12 8 5 37 37 H 0.96995 * 120.00018 * 0.27689 * 16 14 13 38 38 H 1.09007 * 113.61020 * 203.66504 * 19 17 16 39 39 H 1.09001 * 113.61802 * 334.56775 * 19 17 16 40 40 H 1.09004 * 109.46672 * 300.00185 * 23 22 20 41 41 H 1.09005 * 109.46770 * 59.99650 * 23 22 20 42 42 H 1.09001 * 109.47175 * 180.02562 * 23 22 20 43 43 H 1.09000 * 113.61266 * 25.43594 * 24 17 16 44 44 H 1.08994 * 113.61649 * 156.33709 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2934 2.3710 0.0048 5 6 1.9251 3.6062 -0.0010 6 8 1.1849 4.7437 -0.0010 7 6 -0.2361 4.5931 0.0045 8 6 3.3144 3.6836 -0.0062 9 6 3.9913 5.0299 -0.0119 10 8 3.8895 5.6088 -1.3144 11 14 5.7876 4.8238 0.4373 12 6 4.0723 2.5353 -0.0061 13 6 3.4462 1.2852 -0.0003 14 6 4.2539 0.0534 -0.0008 15 8 3.7066 -1.0327 0.0038 16 7 5.5995 0.1300 -0.0074 17 6 6.4029 -1.0951 -0.0073 18 1 5.8737 -1.9482 -0.4320 19 6 7.8188 -0.9032 -0.5757 20 6 8.2601 -0.5503 0.8545 21 1 8.1715 0.5103 1.0896 22 16 9.8757 -1.2396 1.3073 23 6 10.1741 -0.5339 2.9517 24 6 7.0691 -1.3948 1.3459 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2149 2.3165 0.0082 29 1 -0.5464 4.0417 -0.8831 30 1 -0.5400 4.0460 0.8969 31 1 -0.7057 5.5767 0.0034 32 1 3.5077 5.6828 0.7147 33 1 2.9802 5.7453 -1.6142 34 1 5.9071 4.2227 1.7898 35 1 6.4656 3.9614 -0.5636 36 1 5.1504 2.5996 -0.0097 37 1 6.0359 0.9962 -0.0077 38 1 8.2649 -1.8222 -0.9561 39 1 7.8994 -0.0712 -1.2753 40 1 10.1870 0.5539 2.8833 41 1 9.3803 -0.8459 3.6304 42 1 11.1345 -0.8852 3.3291 43 1 6.5448 -0.9595 2.1966 44 1 7.3106 -2.4479 1.4900 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_12297780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:41:24 Heat of formation + Delta-G solvation = -73.517519 kcal Electronic energy + Delta-G solvation = -28105.713801 eV Core-core repulsion = 24118.357514 eV Total energy + Delta-G solvation = -3987.356287 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28423 -41.14948 -40.20687 -39.14806 -38.43294 -37.05309 -34.51171 -32.34938 -31.78708 -29.86871 -29.06557 -28.31776 -26.88803 -26.57245 -26.11077 -24.64951 -23.06424 -21.82148 -20.81356 -20.10537 -18.97776 -18.61232 -17.90094 -17.76745 -17.36712 -17.20482 -16.85045 -16.68368 -16.46038 -16.09200 -15.98000 -15.85309 -15.46063 -15.43369 -15.19260 -14.53398 -14.43783 -14.26782 -14.10250 -14.00480 -13.82002 -13.63498 -13.60455 -13.41029 -12.70966 -12.62449 -12.60661 -12.57550 -12.24169 -11.91281 -11.79518 -11.67510 -11.42104 -11.22264 -10.96413 -10.89861 -10.32258 -10.06657 -9.33531 -8.73903 -4.83337 -0.44852 -0.07059 0.70141 1.33690 1.52750 1.55850 1.64852 1.86617 1.88457 1.95803 2.05202 2.42852 3.21582 3.26303 3.29778 3.39142 3.50841 3.62454 3.63854 3.81958 3.92339 3.95438 4.03072 4.13687 4.21594 4.22421 4.26425 4.27120 4.28727 4.34001 4.40623 4.56047 4.58953 4.60759 4.64509 4.66344 4.68849 4.79035 4.79586 4.84004 4.88657 4.90823 5.12351 5.38744 5.89088 6.14392 6.29450 6.62731 7.02714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.304 6.304 3 C 0.218 3.782 4 C -0.304 4.304 5 C 0.212 3.788 6 O -0.310 6.310 7 C 0.011 3.989 8 C -0.199 4.199 9 C -0.077 4.077 10 O -0.546 6.546 11 Si 0.791 3.209 12 C -0.013 4.013 13 C -0.230 4.230 14 C 0.566 3.434 15 O -0.555 6.555 16 N -0.707 5.707 17 C 0.122 3.878 18 H 0.097 0.903 19 C -0.107 4.107 20 C -0.074 4.074 21 H 0.112 0.888 22 S -0.292 6.292 23 C -0.115 4.115 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.171 0.829 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.374 0.626 34 H -0.260 1.260 35 H -0.271 1.271 36 H 0.143 0.857 37 H 0.405 0.595 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 6.716 1.794 7.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.215 6.215 3 C 0.169 3.831 4 C -0.323 4.323 5 C 0.164 3.836 6 O -0.222 6.222 7 C -0.083 4.083 8 C -0.200 4.200 9 C -0.185 4.185 10 O -0.352 6.352 11 Si 0.691 3.309 12 C -0.031 4.031 13 C -0.234 4.234 14 C 0.355 3.645 15 O -0.434 6.434 16 N -0.359 5.359 17 C 0.015 3.985 18 H 0.115 0.885 19 C -0.147 4.147 20 C -0.203 4.203 21 H 0.130 0.870 22 S -0.064 6.064 23 C -0.283 4.283 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.132 0.868 28 H 0.188 0.812 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.222 0.778 34 H -0.185 1.185 35 H -0.197 1.197 36 H 0.160 0.840 37 H 0.241 0.759 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.670 4.687 1.487 5.193 hybrid contribution -2.651 0.313 0.554 2.726 sum -4.321 5.000 2.041 6.917 Atomic orbital electron populations 1.23521 0.76167 1.05982 1.02844 1.86369 1.23523 1.25677 1.85919 1.18926 0.90719 0.85100 0.88366 1.21481 1.02255 0.90540 1.18007 1.18810 0.90350 0.85388 0.89044 1.86049 1.21509 1.28038 1.86619 1.23538 0.75589 1.06376 1.02751 1.19687 0.91096 0.97084 1.12181 1.25313 1.14659 0.89921 0.88625 1.86678 1.32957 1.83408 1.32184 0.92286 0.74184 0.87362 0.77082 1.20836 0.99329 0.89977 0.92950 1.19138 0.91312 0.93458 1.19486 1.18046 0.82272 0.88522 0.75650 1.90818 1.72114 1.29975 1.50486 1.45526 1.05234 1.09594 1.75564 1.21794 0.91172 0.87924 0.97644 0.88494 1.23145 0.92712 1.04456 0.94355 1.24820 0.92564 1.02126 1.00770 0.86966 1.87064 1.27179 1.67371 1.24780 1.23415 1.06397 1.04062 0.94441 1.23773 0.94725 1.01459 0.97468 0.90770 0.90797 0.86756 0.81170 0.91106 0.91284 0.85481 0.89657 0.77775 1.18526 1.19710 0.84031 0.75855 0.87221 0.88719 0.89546 0.89980 0.87419 0.91015 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.76 8.56 -68.84 -0.59 -3.35 16 3 C 0.22 1.62 6.70 22.82 0.15 1.77 16 4 C -0.30 -0.45 8.01 22.43 0.18 -0.27 16 5 C 0.21 0.35 6.62 22.61 0.15 0.50 16 6 O -0.31 0.61 9.36 -90.33 -0.85 -0.23 16 7 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 8 C -0.20 -0.62 5.27 -19.80 -0.10 -0.73 16 9 C -0.08 -0.02 2.32 71.24 0.17 0.14 16 10 O -0.55 -0.95 12.65 -148.98 -1.89 -2.83 16 11 Si 0.79 -1.78 30.40 68.60 2.09 0.31 16 12 C -0.01 -0.06 8.14 22.50 0.18 0.13 16 13 C -0.23 -1.92 5.89 -20.00 -0.12 -2.04 16 14 C 0.57 6.21 7.76 86.63 0.67 6.88 16 15 O -0.56 -10.18 14.77 16.86 0.25 -9.93 16 16 N -0.71 -3.13 5.21 -443.41 -2.31 -5.44 16 17 C 0.12 0.39 4.30 45.52 0.20 0.59 16 18 H 0.10 0.67 7.50 -2.39 -0.02 0.65 16 19 C -0.11 0.04 7.41 31.12 0.23 0.27 16 20 C -0.07 0.00 4.17 31.21 0.13 0.13 16 21 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 22 S -0.29 -0.90 22.18 -56.49 -1.25 -2.15 16 23 C -0.11 0.18 10.76 113.37 1.22 1.40 16 24 C -0.13 -0.23 7.49 31.21 0.23 0.00 16 25 H 0.07 -0.38 7.65 -2.39 -0.02 -0.40 16 26 H 0.07 -0.37 7.67 -2.38 -0.02 -0.39 16 27 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.17 -0.79 4.50 -2.91 -0.01 -0.80 16 29 H 0.07 -0.72 7.65 -2.39 -0.02 -0.74 16 30 H 0.07 -0.68 7.65 -2.39 -0.02 -0.70 16 31 H 0.13 -1.54 8.14 -2.39 -0.02 -1.56 16 32 H 0.09 -0.15 7.82 -2.39 -0.02 -0.17 16 33 H 0.37 -0.79 8.59 -74.05 -0.64 -1.43 16 34 H -0.26 0.03 7.11 99.48 0.71 0.73 16 35 H -0.27 -0.28 6.80 99.48 0.68 0.39 16 36 H 0.14 0.19 3.24 -2.91 -0.01 0.18 16 37 H 0.40 0.03 6.72 -92.71 -0.62 -0.59 16 38 H 0.11 -0.04 8.10 -2.38 -0.02 -0.06 16 39 H 0.09 -0.21 8.14 -2.39 -0.02 -0.22 16 40 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.11 0.21 8.10 -2.39 -0.02 0.19 16 Total: 0.00 -19.69 371.79 0.76 -18.93 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -0.20 Total: -6.19 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.51 Total: 10.89 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -2.31 Total: -5.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -3.07 Total: -16.35 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: 2.09 Total: 0.31 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -1.25 Total: -2.15 kcal Total: -19.69 0.76 -18.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_12297780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.585 kcal (2) G-P(sol) polarization free energy of solvation -19.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds