Wall clock time and date at job start Sat Mar 6 2021 19:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81392 * 103.00205 * 2 1 4 4 H 1.08999 * 112.84968 * 316.19723 * 3 2 1 5 5 C 1.53781 * 113.69169 * 87.46277 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.98769 * 5 3 2 7 7 H 1.08992 * 113.69868 * 220.05225 * 6 5 3 8 8 N 1.46506 * 113.61276 * 89.07129 * 6 5 3 9 9 C 1.34772 * 120.00033 * 107.61836 * 8 6 5 10 10 O 1.21572 * 119.99654 * 0.02562 * 9 8 6 11 11 C 1.47718 * 120.00347 * 180.02562 * 9 8 6 12 12 C 1.39630 * 120.12317 * 179.72678 * 11 9 8 13 13 C 1.37851 * 119.88367 * 179.79172 * 12 11 9 14 14 C 1.50702 * 119.94214 * 180.23196 * 13 12 11 15 15 O 1.42895 * 109.47233 * 15.22868 * 14 13 12 16 16 Si 1.86297 * 109.47243 * 135.23152 * 14 13 12 17 17 C 1.38634 * 120.11780 * 0.46065 * 13 12 11 18 18 F 1.35099 * 119.88026 * 179.77130 * 17 13 12 19 19 C 1.38672 * 120.23755 * 359.78883 * 17 13 12 20 20 C 1.37816 * 120.12290 * 359.97438 * 19 17 13 21 21 C 1.53781 * 113.61509 * 184.99843 * 3 2 1 22 22 H 1.08998 * 109.47274 * 300.00369 * 1 2 3 23 23 H 1.09004 * 109.46802 * 60.00310 * 1 2 3 24 24 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 25 25 H 1.09005 * 113.61471 * 254.54351 * 5 3 2 26 26 H 1.08996 * 113.61178 * 25.35694 * 5 3 2 27 27 H 0.97002 * 119.99888 * 287.62233 * 8 6 5 28 28 H 1.08011 * 120.05668 * 0.02562 * 12 11 9 29 29 H 1.09002 * 109.47100 * 255.22844 * 14 13 12 30 30 H 0.96708 * 113.99987 * 60.00343 * 15 14 13 31 31 H 1.48501 * 110.00262 * 58.67822 * 16 14 13 32 32 H 1.48499 * 110.00156 * 180.02562 * 16 14 13 33 33 H 1.08004 * 119.94161 * 179.97438 * 19 17 13 34 34 H 1.07998 * 120.06281 * 179.97438 * 20 19 17 35 35 H 1.09002 * 113.61445 * 334.48470 * 21 3 2 36 36 H 1.09002 * 113.61408 * 105.30201 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6110 2.3429 -0.6953 5 6 2.3004 2.3835 1.4068 6 6 3.5225 3.1764 0.9058 7 1 4.3264 3.2511 1.6380 8 7 3.1781 4.4667 0.3035 9 6 3.4527 5.6115 0.9597 10 8 3.9866 5.5733 2.0512 11 6 3.1050 6.9125 0.3526 12 6 3.3831 8.0998 1.0328 13 6 3.0605 9.3113 0.4598 14 6 3.3649 10.5938 1.1904 15 8 4.2819 10.3299 2.2540 16 14 4.1215 11.8179 0.0074 17 6 2.4521 9.3520 -0.7853 18 9 2.1337 10.5419 -1.3403 19 6 2.1688 8.1757 -1.4628 20 6 2.4916 6.9592 -0.9014 21 6 3.7284 2.0519 -0.1228 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.4450 3.0113 1.6568 26 1 2.5374 1.6607 2.1874 27 1 2.7524 4.4972 -0.5676 28 1 3.8538 8.0691 2.0045 29 1 2.4427 11.0064 1.5997 30 1 5.1267 9.9603 1.9624 31 1 3.1905 12.0767 -1.1203 32 1 4.4269 13.0868 0.7158 33 1 1.6944 8.2129 -2.4324 34 1 2.2702 6.0437 -1.4297 35 1 4.3573 1.2386 0.2395 36 1 4.0261 2.4105 -1.1081 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_12496548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:42:02 Heat of formation + Delta-G solvation = -39.936321 kcal Electronic energy + Delta-G solvation = -21415.896036 eV Core-core repulsion = 17908.981586 eV Total energy + Delta-G solvation = -3506.914450 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.42701 -41.63630 -40.25394 -38.99537 -37.69980 -34.60756 -32.62929 -31.88226 -29.82825 -27.32939 -26.78612 -26.50763 -24.68881 -23.26260 -21.75854 -20.74904 -19.34270 -18.88364 -18.02474 -17.84523 -17.54940 -17.14273 -16.86518 -16.20205 -16.11136 -15.80384 -15.74049 -15.40416 -15.14766 -14.93748 -14.74376 -14.47522 -14.10604 -13.98547 -13.76873 -13.72833 -13.54596 -13.34653 -12.78856 -12.51972 -12.36101 -11.81014 -11.59630 -11.44239 -11.21204 -10.92549 -10.83237 -10.27924 -10.04963 -9.72232 -8.69017 -5.04419 -0.52147 0.02289 0.77192 1.20473 1.57073 1.61040 1.62995 1.91099 1.96648 2.57088 2.99057 3.24640 3.33017 3.34294 3.37909 3.55947 3.68060 3.73006 3.92582 3.99376 4.08698 4.30677 4.32028 4.34287 4.47099 4.56111 4.70020 4.74398 4.78661 4.79526 4.86867 4.89907 4.91041 4.97382 5.03265 5.09449 5.45602 5.60421 6.39205 6.61100 7.07635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.304 6.304 3 C -0.070 4.070 4 H 0.122 0.878 5 C -0.137 4.137 6 C 0.123 3.877 7 H 0.096 0.904 8 N -0.693 5.693 9 C 0.564 3.436 10 O -0.572 6.572 11 C -0.150 4.150 12 C -0.028 4.028 13 C -0.157 4.157 14 C -0.071 4.071 15 O -0.551 6.551 16 Si 0.763 3.237 17 C 0.105 3.895 18 F -0.131 7.131 19 C -0.146 4.146 20 C -0.044 4.044 21 C -0.106 4.106 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.416 0.584 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.397 0.603 31 H -0.255 1.255 32 H -0.305 1.305 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -2.370 -6.281 6.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.076 6.076 3 C -0.199 4.199 4 H 0.140 0.860 5 C -0.178 4.178 6 C 0.015 3.985 7 H 0.114 0.886 8 N -0.345 5.345 9 C 0.353 3.647 10 O -0.452 6.452 11 C -0.153 4.153 12 C -0.047 4.047 13 C -0.158 4.158 14 C -0.181 4.181 15 O -0.359 6.359 16 Si 0.667 3.333 17 C 0.086 3.914 18 F -0.110 7.110 19 C -0.164 4.164 20 C -0.062 4.062 21 C -0.146 4.146 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.255 0.745 28 H 0.161 0.839 29 H 0.131 0.869 30 H 0.247 0.753 31 H -0.181 1.181 32 H -0.233 1.233 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.120 0.880 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.553 -2.294 -5.592 6.070 hybrid contribution -1.745 1.060 0.186 2.050 sum -2.299 -1.234 -5.406 6.003 Atomic orbital electron populations 1.23388 0.92057 1.07064 1.05667 1.87171 1.10034 1.12648 1.97716 1.24821 1.01282 0.92769 1.01020 0.86013 1.23783 0.98911 0.99052 0.96074 1.21805 0.98044 0.81871 0.96737 0.88600 1.45420 1.62055 1.04183 1.22875 1.18342 0.77546 0.84507 0.84331 1.90815 1.44284 1.87914 1.22137 1.19922 1.05562 0.92629 0.97192 1.20900 0.94997 0.89321 0.99440 1.20266 1.03593 0.97253 0.94728 1.25071 0.97103 0.99597 0.96283 1.86480 1.29733 1.86529 1.33158 0.94339 0.85384 0.76327 0.77271 1.18026 0.99280 0.81840 0.92268 1.91558 1.90430 1.43788 1.85179 1.21393 1.02550 0.90000 1.02458 1.21485 0.93152 0.99096 0.92485 1.23131 0.93318 0.97215 1.00902 0.90007 0.89400 0.87887 0.90763 0.88379 0.74501 0.83882 0.86885 0.75251 1.18103 1.23333 0.81179 0.80927 0.87983 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.47 10.76 113.37 1.22 1.69 16 2 S -0.30 0.00 22.18 -56.49 -1.25 -1.25 16 3 C -0.07 0.38 4.15 31.12 0.13 0.51 16 4 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 5 C -0.14 0.47 7.48 31.21 0.23 0.70 16 6 C 0.12 -0.43 4.34 45.61 0.20 -0.23 16 7 H 0.10 0.10 7.46 -2.39 -0.02 0.08 16 8 N -0.69 3.72 5.22 -442.58 -2.31 1.41 16 9 C 0.56 0.76 7.77 86.75 0.67 1.43 16 10 O -0.57 -6.02 15.94 -3.94 -0.06 -6.09 16 11 C -0.15 0.28 5.87 -20.09 -0.12 0.17 16 12 C -0.03 -0.02 8.78 22.51 0.20 0.18 16 13 C -0.16 0.04 5.13 -19.86 -0.10 -0.06 16 14 C -0.07 -0.04 2.96 71.24 0.21 0.17 16 15 O -0.55 -0.72 11.64 -148.98 -1.73 -2.45 16 16 Si 0.76 -0.29 30.81 68.60 2.11 1.82 16 17 C 0.11 -0.13 6.67 22.47 0.15 0.02 16 18 F -0.13 -0.28 12.81 44.97 0.58 0.29 16 19 C -0.15 0.93 10.01 22.27 0.22 1.15 16 20 C -0.04 0.36 9.54 22.52 0.21 0.57 16 21 C -0.11 0.67 7.41 31.12 0.23 0.90 16 22 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 23 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 24 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 26 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 27 H 0.42 -5.09 6.73 -92.71 -0.62 -5.71 16 28 H 0.14 0.44 6.67 -2.91 -0.02 0.42 16 29 H 0.11 0.23 7.96 -2.39 -0.02 0.21 16 30 H 0.40 -2.63 8.44 -74.05 -0.62 -3.25 16 31 H -0.26 -0.98 5.27 99.48 0.52 -0.46 16 32 H -0.31 -2.22 7.11 99.48 0.71 -1.51 16 33 H 0.17 -1.89 8.06 -2.91 -0.02 -1.92 16 34 H 0.17 -2.76 6.40 -2.91 -0.02 -2.78 16 35 H 0.10 -0.47 8.10 -2.39 -0.02 -0.49 16 36 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 Total: 0.00 -18.96 318.62 0.52 -18.43 By element: Atomic # 1 Polarization: -19.11 SS G_CDS: -0.27 Total: -19.38 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 3.46 Total: 7.20 kcal Atomic # 7 Polarization: 3.72 SS G_CDS: -2.31 Total: 1.41 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -1.80 Total: -8.54 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.58 Total: 0.29 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.11 Total: 1.82 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.25 Total: -1.25 kcal Total: -18.96 0.52 -18.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_12496548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.502 kcal (2) G-P(sol) polarization free energy of solvation -18.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds