Wall clock time and date at job start Sat Mar 6 2021 19:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81395 * 102.99926 * 2 1 4 4 H 1.09004 * 112.91046 * 316.25327 * 3 2 1 5 5 C 1.53784 * 113.61343 * 87.50664 * 3 2 1 6 6 C 1.53778 * 87.08081 * 139.98024 * 5 3 2 7 7 H 1.09007 * 113.69188 * 220.01042 * 6 5 3 8 8 N 1.46498 * 113.61736 * 89.11728 * 6 5 3 9 9 C 1.34778 * 120.00186 * 107.49948 * 8 6 5 10 10 O 1.21585 * 119.99804 * 0.02562 * 9 8 6 11 11 C 1.47600 * 119.99989 * 180.02562 * 9 8 6 12 12 C 1.39713 * 120.09192 * 0.02562 * 11 9 8 13 13 C 1.37721 * 119.91353 * 180.02562 * 12 11 9 14 14 C 1.50706 * 119.95387 * 179.97438 * 13 12 11 15 15 C 1.38973 * 120.08866 * 0.02562 * 13 12 11 16 16 O 1.35710 * 119.91080 * 179.97438 * 15 13 12 17 17 C 1.39015 * 120.17447 * 0.02562 * 15 13 12 18 18 C 1.50699 * 119.95283 * 179.97438 * 17 15 13 19 19 O 1.42902 * 109.47080 * 285.00028 * 18 17 15 20 20 Si 1.86300 * 109.47208 * 165.00145 * 18 17 15 21 21 C 1.37686 * 120.09319 * 359.67770 * 17 15 13 22 22 C 1.53778 * 87.08449 * 334.56700 * 6 5 3 23 23 H 1.08995 * 109.47288 * 59.99726 * 1 2 3 24 24 H 1.08996 * 109.46835 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46702 * 299.99399 * 1 2 3 26 26 H 1.08993 * 113.61313 * 254.52621 * 5 3 2 27 27 H 1.09000 * 113.61578 * 25.43353 * 5 3 2 28 28 H 0.97004 * 120.00105 * 287.50659 * 8 6 5 29 29 H 1.08005 * 120.04297 * 359.97438 * 12 11 9 30 30 H 1.08998 * 109.46792 * 90.00106 * 14 13 12 31 31 H 1.09001 * 109.46747 * 209.99850 * 14 13 12 32 32 H 1.09002 * 109.47180 * 330.00213 * 14 13 12 33 33 H 0.96703 * 114.00088 * 89.99694 * 16 15 13 34 34 H 1.08999 * 109.47768 * 44.99856 * 18 17 15 35 35 H 0.96702 * 114.00004 * 180.02562 * 19 18 17 36 36 H 1.48504 * 109.99922 * 298.67843 * 20 18 17 37 37 H 1.48496 * 109.99969 * 59.99621 * 20 18 17 38 38 H 1.07989 * 120.04801 * 180.32157 * 21 17 15 39 39 H 1.08998 * 113.61879 * 270.88747 * 22 6 5 40 40 H 1.08997 * 113.69304 * 139.98833 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6108 2.3441 -0.6943 5 6 2.3009 2.3815 1.4077 6 6 3.5207 3.1737 0.9083 7 1 4.3246 3.2478 1.6407 8 7 3.1763 4.4654 0.3090 9 6 3.4496 5.6086 0.9685 10 8 3.9824 5.5679 2.0606 11 6 3.1021 6.9099 0.3649 12 6 2.4893 6.9589 -0.8897 13 6 2.1672 8.1751 -1.4497 14 6 1.5067 8.2290 -2.8033 15 6 2.4513 9.3528 -0.7688 16 8 2.1327 10.5494 -1.3242 17 6 3.0619 9.3084 0.4793 18 6 3.3682 10.5886 1.2130 19 8 4.4980 11.2239 0.6113 20 14 3.7475 10.2067 2.9966 21 6 3.3816 8.0963 1.0487 22 6 3.7284 2.0520 -0.1228 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.4458 3.0089 1.6589 27 1 2.5396 1.6577 2.1871 28 1 2.7514 4.4979 -0.5624 29 1 2.2693 6.0441 -1.4201 30 1 0.4239 8.2042 -2.6804 31 1 1.7937 9.1498 -3.3111 32 1 1.8247 7.3721 -3.3971 33 1 1.2466 10.8642 -1.0988 34 1 2.5062 11.2535 1.1592 35 1 4.7527 12.0557 1.0336 36 1 2.5691 9.5746 3.6423 37 1 4.9210 9.3009 3.0835 38 1 3.8512 8.0625 2.0206 39 1 4.3573 1.2381 0.2379 40 1 4.0258 2.4120 -1.1077 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_13287732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:42:38 Heat of formation + Delta-G solvation = -53.772530 kcal Electronic energy + Delta-G solvation = -23324.926509 eV Core-core repulsion = 19812.646240 eV Total energy + Delta-G solvation = -3512.280269 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.96573 -40.95551 -39.38108 -37.79148 -37.59394 -34.77387 -34.12852 -31.85448 -29.86372 -28.10615 -27.14471 -26.88476 -26.53212 -24.67689 -22.10484 -21.79417 -20.82113 -19.62604 -18.89261 -18.48025 -17.91922 -17.64102 -16.84525 -16.72666 -16.29023 -16.16684 -15.76447 -15.51809 -15.44879 -15.03223 -14.89281 -14.55764 -14.33900 -14.11244 -13.98874 -13.79580 -13.76793 -13.63825 -13.58758 -12.99123 -12.93176 -12.71868 -12.59138 -12.20128 -11.91437 -11.68694 -11.55537 -11.36251 -10.89665 -10.42139 -10.35485 -10.11414 -9.79063 -8.73798 -5.08998 -0.55951 -0.09584 0.71358 1.19370 1.41005 1.52982 1.56801 1.78300 1.91013 2.37610 2.97494 3.23792 3.25904 3.27963 3.38649 3.50233 3.61891 3.77893 3.82203 3.85667 4.03797 4.26778 4.27400 4.28911 4.30954 4.39208 4.48854 4.59152 4.60940 4.64976 4.69314 4.77093 4.80457 4.84813 4.87611 4.89294 4.95659 5.11776 5.20929 5.33460 5.49417 6.22946 6.67579 6.87017 6.90520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.300 6.300 3 C -0.069 4.069 4 H 0.122 0.878 5 C -0.135 4.135 6 C 0.118 3.882 7 H 0.092 0.908 8 N -0.689 5.689 9 C 0.562 3.438 10 O -0.581 6.581 11 C -0.154 4.154 12 C -0.054 4.054 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.163 3.837 16 O -0.488 6.488 17 C -0.126 4.126 18 C -0.059 4.059 19 O -0.559 6.559 20 Si 0.763 3.237 21 C -0.081 4.081 22 C -0.106 4.106 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.417 0.583 29 H 0.169 0.831 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.403 0.597 36 H -0.291 1.291 37 H -0.307 1.307 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 3.501 -4.081 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.071 6.071 3 C -0.198 4.198 4 H 0.140 0.860 5 C -0.176 4.176 6 C 0.010 3.990 7 H 0.110 0.890 8 N -0.341 5.341 9 C 0.351 3.649 10 O -0.462 6.462 11 C -0.157 4.157 12 C -0.072 4.072 13 C -0.117 4.117 14 C -0.167 4.167 15 C 0.117 3.883 16 O -0.302 6.302 17 C -0.127 4.127 18 C -0.170 4.170 19 O -0.369 6.369 20 Si 0.671 3.329 21 C -0.099 4.099 22 C -0.145 4.145 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.256 0.744 29 H 0.186 0.814 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.275 0.725 34 H 0.121 0.879 35 H 0.254 0.746 36 H -0.218 1.218 37 H -0.237 1.237 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.678 1.398 -3.366 5.931 hybrid contribution -1.416 0.638 -0.119 1.557 sum -6.094 2.036 -3.485 7.309 Atomic orbital electron populations 1.23399 0.91887 1.07170 1.05714 1.87160 1.10191 1.12095 1.97704 1.24788 1.01023 0.93149 1.00801 0.85966 1.23729 0.98595 0.98971 0.96286 1.21832 0.98371 0.81773 0.97005 0.89020 1.45391 1.61896 1.04116 1.22742 1.18371 0.77475 0.84762 0.84294 1.90791 1.44772 1.88054 1.22546 1.19772 1.06278 0.92151 0.97526 1.21393 0.94363 0.99176 0.92306 1.20546 1.00516 0.91474 0.99199 1.20795 1.00937 1.04393 0.90569 1.18393 0.94907 0.85999 0.88998 1.84734 1.39874 1.33061 1.72489 1.19922 1.02911 0.94072 0.95777 1.24468 0.93069 0.93650 1.05774 1.86484 1.47413 1.42586 1.60413 0.94749 0.76994 0.85454 0.75706 1.20971 0.97612 0.92161 0.99203 1.23132 0.93667 0.97056 1.00662 0.89335 0.87715 0.89986 0.90695 0.88123 0.74424 0.81416 0.89064 0.90851 0.89511 0.72492 0.87915 0.74578 1.21802 1.23656 0.87008 0.87758 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.39 10.76 113.37 1.22 1.61 16 2 S -0.30 -0.35 22.17 -56.49 -1.25 -1.61 16 3 C -0.07 0.23 4.15 31.12 0.13 0.36 16 4 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 5 C -0.13 0.12 7.47 31.12 0.23 0.35 16 6 C 0.12 0.05 4.32 45.52 0.20 0.24 16 7 H 0.09 0.50 7.46 -2.38 -0.02 0.48 16 8 N -0.69 0.14 5.21 -443.14 -2.31 -2.17 16 9 C 0.56 4.72 7.76 86.71 0.67 5.39 16 10 O -0.58 -10.46 15.94 -3.98 -0.06 -10.52 16 11 C -0.15 -0.95 5.87 -20.08 -0.12 -1.07 16 12 C -0.05 0.08 9.18 22.50 0.21 0.28 16 13 C -0.12 0.13 5.89 -19.81 -0.12 0.01 16 14 C -0.11 0.74 9.79 71.24 0.70 1.43 16 15 C 0.16 0.36 6.66 22.63 0.15 0.51 16 16 O -0.49 0.63 11.84 -90.31 -1.07 -0.44 16 17 C -0.13 -0.75 5.30 -19.81 -0.11 -0.85 16 18 C -0.06 -0.07 2.36 71.24 0.17 0.09 16 19 O -0.56 -1.38 12.86 -148.98 -1.92 -3.29 16 20 Si 0.76 1.79 30.18 68.60 2.07 3.86 16 21 C -0.08 -0.81 8.20 22.51 0.18 -0.62 16 22 C -0.11 0.36 7.42 31.12 0.23 0.59 16 23 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H 0.10 -0.42 8.14 -2.39 -0.02 -0.43 16 25 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.10 0.05 8.10 -2.39 -0.02 0.03 16 28 H 0.42 -3.07 6.72 -92.71 -0.62 -3.70 16 29 H 0.17 -1.61 6.39 -2.91 -0.02 -1.63 16 30 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.07 -0.34 7.52 -2.39 -0.02 -0.36 16 32 H 0.09 -0.80 8.08 -2.39 -0.02 -0.82 16 33 H 0.41 -4.65 9.06 -74.06 -0.67 -5.32 16 34 H 0.10 -0.51 7.82 -2.39 -0.02 -0.52 16 35 H 0.40 -3.37 8.74 -74.06 -0.65 -4.01 16 36 H -0.29 -2.38 7.11 99.48 0.71 -1.68 16 37 H -0.31 -3.88 6.76 99.48 0.67 -3.21 16 38 H 0.11 1.63 4.47 -2.92 -0.01 1.62 16 39 H 0.10 -0.23 8.10 -2.39 -0.02 -0.24 16 40 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: 0.00 -27.33 346.67 -1.63 -28.96 By element: Atomic # 1 Polarization: -22.29 SS G_CDS: -0.84 Total: -23.14 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 3.75 Total: 8.35 kcal Atomic # 7 Polarization: 0.14 SS G_CDS: -2.31 Total: -2.17 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -3.05 Total: -14.25 kcal Atomic # 14 Polarization: 1.79 SS G_CDS: 2.07 Total: 3.86 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.25 Total: -1.61 kcal Total: -27.33 -1.63 -28.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_13287732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.808 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds