Wall clock time and date at job start Sat Mar 6 2021 19:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81392 * 103.00205 * 2 1 4 4 H 1.08999 * 112.84968 * 316.19723 * 3 2 1 5 5 C 1.53781 * 113.69169 * 87.46277 * 3 2 1 6 6 C 1.54049 * 87.08031 * 139.98769 * 5 3 2 7 7 H 1.08992 * 113.69868 * 220.05225 * 6 5 3 8 8 N 1.46506 * 113.61276 * 89.07129 * 6 5 3 9 9 C 1.34772 * 120.00033 * 107.61836 * 8 6 5 10 10 O 1.21601 * 119.99599 * 0.02562 * 9 8 6 11 11 C 1.47516 * 120.00505 * 180.02562 * 9 8 6 12 12 C 1.39775 * 120.07168 * 180.02562 * 11 9 8 13 13 C 1.37635 * 119.92714 * 179.97438 * 12 11 9 14 14 C 1.50703 * 119.96161 * 179.97438 * 13 12 11 15 15 O 1.42900 * 109.47194 * 255.00212 * 14 13 12 16 16 Si 1.86300 * 109.46914 * 15.00184 * 14 13 12 17 17 C 1.39199 * 120.07164 * 0.02562 * 13 12 11 18 18 N 1.39046 * 119.92948 * 180.02562 * 17 13 12 19 19 C 1.46902 * 110.99971 * 119.99802 * 18 17 13 20 20 C 1.46900 * 110.99687 * 243.95144 * 18 17 13 21 21 C 1.39236 * 120.13566 * 359.97438 * 17 13 12 22 22 C 1.37586 * 120.07209 * 359.74714 * 21 17 13 23 23 C 1.53781 * 113.61509 * 184.99843 * 3 2 1 24 24 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47274 * 300.00369 * 1 2 3 26 26 H 1.09004 * 109.46802 * 60.00310 * 1 2 3 27 27 H 1.09005 * 113.61471 * 254.54351 * 5 3 2 28 28 H 1.08996 * 113.61178 * 25.35694 * 5 3 2 29 29 H 0.97002 * 119.99888 * 287.62233 * 8 6 5 30 30 H 1.08000 * 120.03690 * 359.95101 * 12 11 9 31 31 H 1.09000 * 109.46569 * 134.99777 * 14 13 12 32 32 H 0.96703 * 113.99843 * 299.99640 * 15 14 13 33 33 H 1.48496 * 110.00139 * 59.99969 * 16 14 13 34 34 H 1.48509 * 109.99884 * 181.31829 * 16 14 13 35 35 H 1.08998 * 109.46962 * 59.99822 * 19 18 17 36 36 H 1.09004 * 109.47189 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47191 * 299.99639 * 19 18 17 38 38 H 1.09000 * 109.47382 * 60.00354 * 20 18 17 39 39 H 1.09000 * 109.46972 * 180.02562 * 20 18 17 40 40 H 1.09003 * 109.47090 * 299.99503 * 20 18 17 41 41 H 1.08003 * 119.96033 * 179.97438 * 21 17 13 42 42 H 1.08004 * 120.03880 * 180.25048 * 22 21 17 43 43 H 1.09002 * 113.61445 * 334.48470 * 23 3 2 44 44 H 1.09002 * 113.61408 * 105.30201 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6110 2.3429 -0.6953 5 6 2.3004 2.3835 1.4068 6 6 3.5225 3.1764 0.9058 7 1 4.3264 3.2511 1.6380 8 7 3.1781 4.4667 0.3035 9 6 3.4527 5.6115 0.9597 10 8 3.9867 5.5732 2.0515 11 6 3.1055 6.9107 0.3535 12 6 3.3901 8.0988 1.0326 13 6 3.0653 9.3094 0.4640 14 6 3.3713 10.5909 1.1957 15 8 2.1632 11.1329 1.7329 16 14 4.5666 10.2440 2.5820 17 6 2.4536 9.3514 -0.7856 18 7 2.1272 10.5761 -1.3575 19 6 2.8153 10.7570 -2.6428 20 6 0.6731 10.7127 -1.5150 21 6 2.1687 8.1696 -1.4646 22 6 2.4961 6.9565 -0.9041 23 6 3.7284 2.0519 -0.1228 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.4450 3.0113 1.6568 28 1 2.5374 1.6607 2.1874 29 1 2.7524 4.4972 -0.5676 30 1 3.8640 8.0669 2.0025 31 1 3.8150 11.3070 0.5041 32 1 1.4935 11.3380 1.0660 33 1 5.8273 9.6799 2.0366 34 1 4.8519 11.4941 3.3313 35 1 2.5207 9.9618 -3.3276 36 1 2.5420 11.7225 -3.0685 37 1 3.8933 10.7207 -2.4861 38 1 0.1938 10.6443 -0.5384 39 1 0.4456 11.6791 -1.9648 40 1 0.3009 9.9160 -2.1591 41 1 1.6936 8.2055 -2.4338 42 1 2.2786 6.0403 -1.4330 43 1 4.3573 1.2386 0.2395 44 1 4.0261 2.4105 -1.1081 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_13422196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:42:57 Heat of formation + Delta-G solvation = 8.637488 kcal Electronic energy + Delta-G solvation = -25223.986907 eV Core-core repulsion = 21656.593983 eV Total energy + Delta-G solvation = -3567.392924 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84650 -40.90979 -39.26022 -37.70268 -37.31167 -34.58142 -32.70461 -31.30302 -29.82674 -28.60295 -27.01530 -26.94170 -26.78664 -25.48911 -23.42730 -22.95373 -21.34164 -20.74103 -19.20748 -18.10546 -18.01438 -17.51788 -17.31318 -16.68815 -16.44160 -16.11935 -15.95086 -15.83303 -15.40623 -15.36795 -15.18805 -14.95721 -14.56857 -14.46896 -14.20138 -14.06172 -13.94646 -13.75872 -13.55552 -13.48995 -13.10180 -13.01265 -12.74193 -12.64454 -12.51629 -12.21213 -11.81948 -11.59857 -11.41496 -11.31342 -11.07887 -10.83760 -10.27409 -10.11295 -9.82158 -9.63874 -8.69348 -4.93175 -0.43299 0.13202 0.76664 1.31909 1.52880 1.61444 1.63908 1.85719 1.93792 2.59551 2.71192 3.33237 3.36698 3.48158 3.56400 3.68851 3.72563 3.88255 3.92298 4.01242 4.09924 4.17516 4.30825 4.32334 4.33549 4.38673 4.42105 4.47922 4.56454 4.63540 4.67835 4.69476 4.76851 4.78701 4.86873 4.90539 4.92446 4.96323 4.97571 5.01236 5.11457 5.19232 5.44546 5.52215 5.74666 6.18110 6.38699 6.62251 7.07376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.303 6.303 3 C -0.070 4.070 4 H 0.120 0.880 5 C -0.135 4.135 6 C 0.122 3.878 7 H 0.096 0.904 8 N -0.694 5.694 9 C 0.562 3.438 10 O -0.569 6.569 11 C -0.146 4.146 12 C -0.058 4.058 13 C -0.113 4.113 14 C -0.058 4.058 15 O -0.544 6.544 16 Si 0.772 3.228 17 C 0.126 3.874 18 N -0.529 5.529 19 C 0.025 3.975 20 C 0.023 3.977 21 C -0.152 4.152 22 C -0.058 4.058 23 C -0.108 4.108 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.415 0.585 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.373 0.627 33 H -0.274 1.274 34 H -0.287 1.287 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.152 0.848 42 H 0.161 0.839 43 H 0.102 0.898 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -0.714 -7.097 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.075 6.075 3 C -0.199 4.199 4 H 0.138 0.862 5 C -0.176 4.176 6 C 0.014 3.986 7 H 0.114 0.886 8 N -0.346 5.346 9 C 0.351 3.649 10 O -0.449 6.449 11 C -0.149 4.149 12 C -0.077 4.077 13 C -0.114 4.114 14 C -0.168 4.168 15 O -0.351 6.351 16 Si 0.676 3.324 17 C 0.031 3.969 18 N -0.250 5.250 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.172 4.172 22 C -0.077 4.077 23 C -0.147 4.147 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.253 0.747 30 H 0.155 0.845 31 H 0.097 0.903 32 H 0.223 0.777 33 H -0.200 1.200 34 H -0.214 1.214 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.169 0.831 42 H 0.178 0.822 43 H 0.121 0.879 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.710 -1.176 -5.172 5.956 hybrid contribution -1.548 1.075 -2.232 2.921 sum -4.258 -0.101 -7.403 8.541 Atomic orbital electron populations 1.23389 0.91975 1.07088 1.05691 1.87163 1.10115 1.12519 1.97722 1.24804 1.01106 0.92836 1.01113 0.86168 1.23771 0.98847 0.98994 0.95980 1.21821 0.98208 0.81812 0.96721 0.88566 1.45424 1.62128 1.04234 1.22832 1.18352 0.77590 0.84564 0.84439 1.90808 1.44157 1.87937 1.22014 1.19842 1.05522 0.92357 0.97164 1.21080 0.96542 0.90981 0.99100 1.20190 1.00873 0.95154 0.95191 1.25146 0.94066 0.92618 1.04932 1.86701 1.26310 1.84625 1.37469 0.92272 0.75437 0.83115 0.81604 1.18976 0.95475 0.89672 0.92741 1.59451 1.10369 1.28717 1.26511 1.22526 0.98995 1.02690 0.87907 1.22595 0.84263 1.02843 1.02600 1.21819 1.01649 0.92071 1.01631 1.21447 0.94221 0.99431 0.92619 1.23135 0.93479 0.97294 1.00788 0.87839 0.89910 0.89456 0.90595 0.88227 0.74676 0.84519 0.90252 0.77740 1.19961 1.21372 0.93591 0.89476 0.91889 0.90807 0.89366 0.93808 0.83061 0.82159 0.87928 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.44 10.76 113.37 1.22 1.66 16 2 S -0.30 -0.14 22.18 -56.49 -1.25 -1.40 16 3 C -0.07 0.32 4.15 31.12 0.13 0.45 16 4 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 5 C -0.13 0.37 7.48 31.21 0.23 0.60 16 6 C 0.12 -0.27 4.34 45.61 0.20 -0.07 16 7 H 0.10 0.21 7.46 -2.39 -0.02 0.20 16 8 N -0.69 2.38 5.21 -442.77 -2.31 0.07 16 9 C 0.56 2.00 7.76 86.69 0.67 2.67 16 10 O -0.57 -6.84 15.94 -4.03 -0.06 -6.91 16 11 C -0.15 -0.15 5.88 -20.08 -0.12 -0.26 16 12 C -0.06 -0.23 8.19 22.50 0.18 -0.04 16 13 C -0.11 -0.29 5.28 -19.77 -0.10 -0.40 16 14 C -0.06 -0.23 2.29 71.24 0.16 -0.06 16 15 O -0.54 -2.56 12.65 -148.98 -1.89 -4.45 16 16 Si 0.77 4.08 30.17 68.60 2.07 6.15 16 17 C 0.13 -0.13 4.66 38.47 0.18 0.04 16 18 N -0.53 1.67 3.70 -745.09 -2.76 -1.09 16 19 C 0.02 -0.13 9.34 127.69 1.19 1.06 16 20 C 0.02 -0.15 9.09 127.69 1.16 1.01 16 21 C -0.15 0.73 8.53 22.36 0.19 0.92 16 22 C -0.06 0.31 9.53 22.50 0.21 0.52 16 23 C -0.11 0.54 7.41 31.12 0.23 0.77 16 24 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 28 H 0.10 -0.11 8.10 -2.39 -0.02 -0.13 16 29 H 0.41 -4.12 6.72 -92.71 -0.62 -4.75 16 30 H 0.14 0.68 4.70 -2.91 -0.01 0.67 16 31 H 0.08 0.31 7.78 -2.39 -0.02 0.29 16 32 H 0.37 0.06 7.47 -74.06 -0.55 -0.49 16 33 H -0.27 -2.41 7.11 99.48 0.71 -1.70 16 34 H -0.29 -3.09 7.11 99.48 0.71 -2.38 16 35 H 0.05 -0.33 7.09 -2.39 -0.02 -0.35 16 36 H 0.09 -0.60 8.12 -2.39 -0.02 -0.62 16 37 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.07 -0.46 7.40 -2.39 -0.02 -0.48 16 39 H 0.09 -0.72 8.12 -2.39 -0.02 -0.74 16 40 H 0.04 -0.35 7.32 -2.39 -0.02 -0.36 16 41 H 0.15 -1.38 6.99 -2.91 -0.02 -1.40 16 42 H 0.16 -2.02 6.39 -2.91 -0.02 -2.04 16 43 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 44 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: 0.00 -16.42 367.50 -0.57 -16.99 By element: Atomic # 1 Polarization: -18.14 SS G_CDS: -0.12 Total: -18.25 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.75 Total: 8.89 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -5.07 Total: -1.02 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.95 Total: -11.36 kcal Atomic # 14 Polarization: 4.08 SS G_CDS: 2.07 Total: 6.15 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.25 Total: -1.40 kcal Total: -16.42 -0.57 -16.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_13422196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.625 kcal (2) G-P(sol) polarization free energy of solvation -16.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds