Wall clock time and date at job start Sat Mar 6 2021 19:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35993 * 117.00914 * 2 1 4 4 C 1.38559 * 120.05976 * 0.29523 * 3 2 1 5 5 C 1.38276 * 120.01795 * 180.25344 * 4 3 2 6 6 C 1.50703 * 119.92271 * 179.72400 * 5 4 3 7 7 O 1.42896 * 109.47055 * 299.72750 * 6 5 4 8 8 Si 1.86304 * 109.46911 * 179.72642 * 6 5 4 9 9 C 1.38208 * 120.15614 * 359.45053 * 5 4 3 10 10 C 1.38383 * 120.12685 * 0.27431 * 9 5 4 11 11 Cl 1.73603 * 120.00494 * 179.97438 * 10 9 5 12 12 C 1.38615 * 119.98120 * 0.02562 * 10 9 5 13 13 O 1.36027 * 120.07277 * 179.97438 * 12 10 9 14 14 C 1.42898 * 116.99980 * 90.00295 * 13 12 10 15 15 C 1.52994 * 109.47573 * 89.99753 * 14 13 12 16 16 C 1.50704 * 109.46760 * 209.99661 * 14 13 12 17 17 O 1.21275 * 120.00002 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99819 * 180.02562 * 16 14 13 19 19 C 1.46500 * 119.99708 * 180.02562 * 18 16 14 20 20 H 1.08994 * 112.85208 * 334.65876 * 19 18 16 21 21 C 1.53782 * 113.61597 * 105.86556 * 19 18 16 22 22 C 1.54051 * 86.98793 * 89.15734 * 21 19 18 23 23 H 1.08997 * 113.60993 * 270.88084 * 22 21 19 24 24 S 1.81399 * 113.69371 * 139.98968 * 22 21 19 25 25 C 1.81402 * 102.99915 * 87.46581 * 24 22 21 26 26 C 1.53781 * 87.07599 * 25.43247 * 22 21 19 27 27 H 1.08996 * 109.47835 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46879 * 300.00345 * 1 2 3 29 29 H 1.09006 * 109.46768 * 59.99989 * 1 2 3 30 30 H 1.08004 * 119.99245 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 59.72558 * 6 5 4 32 32 H 0.96703 * 114.00193 * 180.02562 * 7 6 5 33 33 H 1.48495 * 110.00011 * 60.00027 * 8 6 5 34 34 H 1.48509 * 109.99497 * 181.32041 * 8 6 5 35 35 H 1.07994 * 119.93903 * 180.24913 * 9 5 4 36 36 H 1.08993 * 109.47253 * 329.99316 * 14 13 12 37 37 H 1.08999 * 109.47577 * 180.02562 * 15 14 13 38 38 H 1.09007 * 109.47035 * 299.99666 * 15 14 13 39 39 H 1.09000 * 109.47419 * 59.99805 * 15 14 13 40 40 H 0.97000 * 120.00271 * 359.97438 * 18 16 14 41 41 H 1.09008 * 113.61223 * 203.66446 * 21 19 18 42 42 H 1.09005 * 113.61260 * 334.55545 * 21 19 18 43 43 H 1.08998 * 109.47137 * 299.99820 * 25 24 22 44 44 H 1.08999 * 109.47172 * 60.00125 * 25 24 22 45 45 H 1.09000 * 109.47483 * 179.97438 * 25 24 22 46 46 H 1.09002 * 113.60972 * 220.02472 * 26 22 21 47 47 H 1.09000 * 113.69176 * 89.13194 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2933 2.3746 0.0062 5 6 1.9221 3.6061 0.0009 6 6 1.1007 4.8696 0.0013 7 8 0.2763 4.9021 -1.1654 8 14 2.2350 6.3475 0.0018 9 6 3.3022 3.6810 0.0009 10 6 4.0606 2.5235 0.0004 11 17 5.7939 2.6212 -0.0002 12 6 3.4359 1.2860 -0.0005 13 8 4.1796 0.1471 -0.0015 14 6 4.5343 -0.3972 1.2713 15 6 3.4531 -1.3800 1.7250 16 6 5.8532 -1.1177 1.1596 17 8 6.4321 -1.1612 0.0948 18 7 6.3889 -1.7146 2.2428 19 6 7.6712 -2.4145 2.1342 20 1 7.8770 -2.7668 1.1235 21 6 8.8449 -1.6525 2.7720 22 6 8.4980 -2.3803 4.0847 23 1 7.7700 -1.8501 4.6986 24 16 9.9522 -2.9204 5.0250 25 6 10.3430 -1.4695 6.0412 26 6 7.8804 -3.4882 3.2152 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2147 2.3192 0.0106 31 1 0.4719 4.8938 0.8913 32 1 -0.2808 5.6898 -1.2315 33 1 3.0976 6.3261 -1.2066 34 1 1.4373 7.5998 0.0344 35 1 3.7896 4.6446 0.0008 36 1 4.6213 0.4089 1.9997 37 1 3.7234 -1.7948 2.6961 38 1 2.4991 -0.8588 1.8059 39 1 3.3661 -2.1862 0.9966 40 1 5.9257 -1.6801 3.0943 41 1 9.8175 -1.9278 2.3639 42 1 8.6931 -0.5740 2.8157 43 1 10.5552 -0.6188 5.3936 44 1 9.4931 -1.2352 6.6821 45 1 11.2154 -1.6827 6.6589 46 1 6.9503 -3.8907 3.6166 47 1 8.5886 -4.2652 2.9276 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_13428712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:00 Heat of formation + Delta-G solvation = -76.363653 kcal Electronic energy + Delta-G solvation = -31968.330574 eV Core-core repulsion = 27465.513459 eV Total energy + Delta-G solvation = -4502.817116 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.099 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00841 -41.29455 -39.74961 -39.17801 -38.67763 -37.80536 -37.06435 -34.72515 -32.88618 -31.45133 -31.35278 -29.82277 -28.55111 -26.87636 -26.79518 -26.52793 -25.07572 -23.62670 -22.74752 -21.84882 -20.73744 -19.61058 -18.75307 -18.72038 -18.38639 -17.96980 -17.79283 -17.05010 -16.85566 -16.70411 -16.30877 -16.17444 -15.95593 -15.83668 -15.47586 -15.32661 -15.13578 -14.74109 -14.58357 -14.42380 -14.22031 -14.05596 -14.02204 -13.84679 -13.64369 -13.56047 -13.37279 -13.20726 -12.93055 -12.86702 -12.60746 -12.51093 -12.42699 -12.18175 -11.97699 -11.81734 -11.78495 -11.60550 -11.36784 -10.87726 -10.74986 -10.58598 -10.20912 -9.84849 -9.41203 -8.69155 -4.96452 -0.34428 -0.03327 0.76819 0.83539 1.22065 1.43292 1.56471 1.58191 1.65411 1.93416 2.14640 2.20934 2.64862 3.21193 3.31865 3.36664 3.53878 3.58232 3.68419 3.74402 3.81720 3.84187 3.93039 3.99317 4.03071 4.07218 4.27762 4.31271 4.32636 4.36755 4.42108 4.46772 4.59785 4.68096 4.69168 4.70238 4.73986 4.77087 4.79175 4.82809 4.86696 4.89744 4.98181 5.09682 5.18618 5.23499 5.45945 5.91702 6.30544 6.45429 6.55565 7.11844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.311 6.311 3 C 0.127 3.873 4 C -0.163 4.163 5 C -0.026 4.026 6 C -0.076 4.076 7 O -0.554 6.554 8 Si 0.746 3.254 9 C -0.137 4.137 10 C -0.023 4.023 11 Cl -0.048 7.048 12 C 0.054 3.946 13 O -0.308 6.308 14 C 0.073 3.927 15 C -0.162 4.162 16 C 0.520 3.480 17 O -0.558 6.558 18 N -0.694 5.694 19 C 0.123 3.877 20 H 0.089 0.911 21 C -0.137 4.137 22 C -0.068 4.068 23 H 0.122 0.878 24 S -0.303 6.303 25 C -0.113 4.113 26 C -0.105 4.105 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.163 0.837 31 H 0.116 0.884 32 H 0.400 0.600 33 H -0.303 1.303 34 H -0.276 1.276 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.418 0.582 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 2.749 9.472 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C 0.080 3.920 4 C -0.182 4.182 5 C -0.027 4.027 6 C -0.185 4.185 7 O -0.365 6.365 8 Si 0.651 3.349 9 C -0.156 4.156 10 C -0.050 4.050 11 Cl -0.019 7.019 12 C 0.008 3.992 13 O -0.224 6.224 14 C 0.014 3.986 15 C -0.219 4.219 16 C 0.306 3.694 17 O -0.435 6.435 18 N -0.349 5.349 19 C 0.016 3.984 20 H 0.107 0.893 21 C -0.178 4.178 22 C -0.197 4.197 23 H 0.140 0.860 24 S -0.075 6.075 25 C -0.281 4.281 26 C -0.144 4.144 27 H 0.137 0.863 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.180 0.820 31 H 0.134 0.866 32 H 0.251 0.749 33 H -0.231 1.231 34 H -0.203 1.203 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.256 0.744 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.265 1.601 8.059 9.758 hybrid contribution -1.494 1.592 -0.479 2.235 sum -6.758 3.194 7.580 10.645 Atomic orbital electron populations 1.23461 0.76027 1.05941 1.02667 1.86209 1.23474 1.24999 1.87725 1.19185 0.90437 0.86153 0.96196 1.21312 1.01741 0.90064 1.05103 1.19208 0.91998 0.94669 0.96781 1.24835 0.99718 1.02258 0.91699 1.86535 1.58294 1.48193 1.43488 0.94290 0.79657 0.74000 0.86940 1.20823 0.93070 0.97237 1.04426 1.21028 0.85969 0.93588 1.04460 1.98411 1.08416 1.98468 1.96618 1.17748 0.87335 0.85323 1.08784 1.86253 1.69893 1.38042 1.28256 1.22349 0.92715 0.97610 0.85883 1.22264 0.98205 0.98873 1.02551 1.20594 0.86257 0.78660 0.83895 1.90747 1.63246 1.59942 1.29580 1.45406 1.22267 1.54922 1.12262 1.21730 0.83128 0.93537 1.00007 0.89268 1.23774 0.99277 1.00224 0.94495 1.24844 0.96746 1.01389 0.96686 0.85988 1.87149 1.40046 1.27145 1.53137 1.23389 1.06012 0.97314 1.01414 1.23112 1.02221 0.95648 0.93425 0.86257 0.90434 0.92102 0.82000 0.86614 0.74883 1.23072 1.20285 0.82953 0.87573 0.87998 0.89961 0.92307 0.74447 0.88476 0.90825 0.90024 0.89354 0.87789 0.87914 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.31 -0.61 8.18 -79.61 -0.65 -1.27 16 3 C 0.13 0.45 6.54 22.56 0.15 0.60 16 4 C -0.16 -0.01 8.60 22.36 0.19 0.18 16 5 C -0.03 -0.01 5.42 -19.86 -0.11 -0.11 16 6 C -0.08 0.32 2.81 71.24 0.20 0.52 16 7 O -0.55 0.87 12.75 -148.98 -1.90 -1.03 16 8 Si 0.75 -2.55 29.78 68.60 2.04 -0.50 16 9 C -0.14 -0.30 8.45 22.30 0.19 -0.12 16 10 C -0.02 -0.14 6.33 22.39 0.14 0.00 16 11 Cl -0.05 -0.37 28.50 -2.72 -0.08 -0.45 16 12 C 0.05 0.38 5.56 22.58 0.13 0.51 16 13 O -0.31 -3.12 8.48 -67.44 -0.57 -3.69 16 14 C 0.07 0.19 3.20 29.85 0.10 0.29 16 15 C -0.16 0.41 8.99 71.98 0.65 1.05 16 16 C 0.52 3.08 7.23 87.66 0.63 3.71 16 17 O -0.56 -9.26 16.12 16.02 0.26 -9.01 16 18 N -0.69 1.37 5.16 -440.04 -2.27 -0.90 16 19 C 0.12 -0.05 4.30 45.52 0.20 0.15 16 20 H 0.09 0.43 7.50 -2.39 -0.02 0.41 16 21 C -0.14 0.12 7.49 31.21 0.23 0.36 16 22 C -0.07 0.24 4.16 31.21 0.13 0.37 16 23 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 24 S -0.30 -0.40 22.19 -56.49 -1.25 -1.65 16 25 C -0.11 0.36 10.76 113.37 1.22 1.58 16 26 C -0.10 0.42 7.41 31.12 0.23 0.65 16 27 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.08 -0.74 7.65 -2.39 -0.02 -0.76 16 29 H 0.06 -0.35 7.68 -2.38 -0.02 -0.37 16 30 H 0.16 -0.68 6.30 -2.91 -0.02 -0.70 16 31 H 0.12 -1.18 7.96 -2.39 -0.02 -1.20 16 32 H 0.40 -3.85 8.74 -74.05 -0.65 -4.49 16 33 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 34 H -0.28 0.02 7.11 99.48 0.71 0.73 16 35 H 0.15 -0.12 4.86 -2.91 -0.01 -0.13 16 36 H 0.11 -0.17 7.91 -2.39 -0.02 -0.19 16 37 H 0.10 -0.94 7.56 -2.39 -0.02 -0.96 16 38 H 0.08 -0.22 6.28 -2.38 -0.01 -0.23 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.42 -3.80 8.12 -92.71 -0.75 -4.55 16 41 H 0.10 0.09 8.11 -2.38 -0.02 0.07 16 42 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 43 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.10 -0.25 8.10 -2.39 -0.02 -0.27 16 Total: 0.00 -25.86 414.33 0.63 -25.23 By element: Atomic # 1 Polarization: -17.16 SS G_CDS: -0.34 Total: -17.50 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.39 Total: 10.77 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.27 Total: -0.90 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -2.86 Total: -15.00 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.04 Total: -0.50 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.25 Total: -1.65 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -25.86 0.63 -25.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_13428712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.130 kcal (2) G-P(sol) polarization free energy of solvation -25.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds