Wall clock time and date at job start Sat Mar 6 2021 19:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81408 * 103.00141 * 2 1 4 4 H 1.08998 * 112.84615 * 316.19587 * 3 2 1 5 5 C 1.53778 * 113.61395 * 87.50176 * 3 2 1 6 6 C 1.53781 * 87.07849 * 139.98312 * 5 3 2 7 7 H 1.09003 * 113.69034 * 220.01086 * 6 5 3 8 8 N 1.46496 * 113.61614 * 89.11738 * 6 5 3 9 9 C 1.34777 * 120.00271 * 107.49783 * 8 6 5 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 8 6 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 8 6 12 12 C 1.50701 * 109.47064 * 180.02562 * 11 9 8 13 13 C 1.34853 * 125.88789 * 85.02873 * 12 11 9 14 14 C 1.40886 * 107.41488 * 180.02562 * 13 12 11 15 15 C 1.34855 * 107.41902 * 359.97438 * 14 13 12 16 16 C 1.50701 * 125.88871 * 179.97438 * 15 14 13 17 17 O 1.42906 * 109.46937 * 245.02015 * 16 15 14 18 18 Si 1.86292 * 109.47390 * 5.02117 * 16 15 14 19 19 N 1.36339 * 108.21615 * 359.73623 * 15 14 13 20 20 C 1.53777 * 113.61481 * 185.00491 * 3 2 1 21 21 H 1.09003 * 109.46961 * 300.00251 * 1 2 3 22 22 H 1.08997 * 109.47251 * 59.99764 * 1 2 3 23 23 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 24 24 H 1.09000 * 113.61275 * 25.43566 * 5 3 2 25 25 H 1.08991 * 113.61276 * 254.52909 * 5 3 2 26 26 H 0.97005 * 120.00266 * 287.50366 * 8 6 5 27 27 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 28 28 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 29 29 H 1.07996 * 126.29321 * 359.97246 * 13 12 11 30 30 H 1.08005 * 126.29312 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.47158 * 125.02825 * 16 15 14 32 32 H 0.96692 * 113.99815 * 179.97438 * 17 16 15 33 33 H 1.48503 * 109.99943 * 178.68135 * 18 16 15 34 34 H 1.48496 * 110.00317 * 299.99878 * 18 16 15 35 35 H 0.96998 * 125.63811 * 180.25946 * 19 15 14 36 36 H 1.08998 * 113.61996 * 105.46673 * 20 3 2 37 37 H 1.08998 * 113.68961 * 334.57573 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3008 2.3816 1.4077 6 6 3.5206 3.1738 0.9083 7 1 4.3245 3.2479 1.6407 8 7 3.1762 4.4654 0.3089 9 6 3.4494 5.6087 0.9683 10 8 3.9809 5.5681 2.0577 11 6 3.0946 6.9373 0.3520 12 6 3.5027 8.0486 1.2845 13 6 4.7274 8.6081 1.3594 14 6 4.6765 9.6026 2.3559 15 6 3.4224 9.6135 2.8517 16 6 2.9109 10.5205 3.9411 17 8 2.5606 9.7397 5.0856 18 14 4.2379 11.7427 4.4057 19 7 2.6957 8.6661 2.1935 20 6 3.7283 2.0520 -0.1229 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 2.5395 1.6578 2.1870 25 1 1.4457 3.0090 1.6587 26 1 2.7514 4.4979 -0.5626 27 1 2.0191 6.9828 0.1807 28 1 3.6187 7.0491 -0.5972 29 1 5.5892 8.3419 0.7654 30 1 5.4917 10.2399 2.6654 31 1 2.0316 11.0569 3.5843 32 1 2.2231 10.2594 5.8278 33 1 3.7350 12.6633 5.4568 34 1 5.4421 11.0239 4.8938 35 1 1.7600 8.4627 2.3486 36 1 4.0256 2.4134 -1.1074 37 1 4.3584 1.2389 0.2374 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_14644196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:10 Heat of formation + Delta-G solvation = 6.056749 kcal Electronic energy + Delta-G solvation = -19595.233055 eV Core-core repulsion = 16467.029600 eV Total energy + Delta-G solvation = -3128.203455 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33171 -41.12037 -39.19268 -37.85599 -34.42193 -32.99778 -31.94738 -29.87520 -29.54113 -26.82874 -26.41653 -24.94343 -22.28757 -21.34797 -21.04147 -20.66047 -18.65329 -18.50804 -18.13916 -17.48348 -16.92706 -16.35178 -16.02695 -15.80679 -15.49732 -15.12573 -14.92973 -14.64061 -14.49652 -14.40468 -14.07943 -14.01781 -13.83390 -13.59397 -13.49368 -13.32369 -12.93597 -12.54890 -12.43616 -11.96538 -11.83065 -11.61514 -11.05843 -10.86116 -10.62179 -10.16572 -9.80742 -8.96605 -8.72556 -4.88976 0.73912 1.03514 1.29006 1.56408 1.60479 1.61622 1.81926 1.99428 2.24332 2.48317 3.31048 3.36118 3.38775 3.65228 3.68952 3.89567 3.91000 4.02252 4.21422 4.28044 4.28324 4.29464 4.45743 4.47920 4.62086 4.65158 4.71462 4.79439 4.80668 4.83801 4.86869 4.99012 5.23392 5.30060 5.50211 5.99548 6.11773 6.47907 6.52495 6.67752 7.23125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.066 4.066 4 H 0.124 0.876 5 C -0.137 4.137 6 C 0.123 3.877 7 H 0.085 0.915 8 N -0.699 5.699 9 C 0.513 3.487 10 O -0.578 6.578 11 C -0.064 4.064 12 C 0.034 3.966 13 C -0.200 4.200 14 C -0.205 4.205 15 C 0.018 3.982 16 C -0.065 4.065 17 O -0.566 6.566 18 Si 0.793 3.207 19 N -0.538 5.538 20 C -0.107 4.107 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.419 0.581 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.396 0.604 33 H -0.278 1.278 34 H -0.308 1.308 35 H 0.419 0.581 36 H 0.102 0.898 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 3.129 -6.623 8.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.079 6.079 3 C -0.195 4.195 4 H 0.142 0.858 5 C -0.178 4.178 6 C 0.015 3.985 7 H 0.103 0.897 8 N -0.352 5.352 9 C 0.300 3.700 10 O -0.456 6.456 11 C -0.104 4.104 12 C -0.080 4.080 13 C -0.224 4.224 14 C -0.230 4.230 15 C -0.095 4.095 16 C -0.173 4.173 17 O -0.377 6.377 18 Si 0.697 3.303 19 N -0.133 5.133 20 C -0.147 4.147 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.122 0.878 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.257 0.743 27 H 0.150 0.850 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.115 0.885 32 H 0.247 0.753 33 H -0.205 1.205 34 H -0.236 1.236 35 H 0.257 0.743 36 H 0.120 0.880 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.598 1.995 -5.607 6.954 hybrid contribution -2.022 0.174 1.000 2.262 sum -5.619 2.168 -4.607 7.583 Atomic orbital electron populations 1.23384 0.91864 1.07114 1.05685 1.87188 1.10244 1.12760 1.97722 1.24790 1.01151 0.92681 1.00846 0.85849 1.23709 0.98991 0.99058 0.96030 1.21672 0.97672 0.82621 0.96560 0.89683 1.45523 1.62674 1.04003 1.23022 1.21133 0.77294 0.86651 0.84923 1.90782 1.43803 1.88026 1.22984 1.20259 1.06011 0.85766 0.98375 1.19924 0.91600 0.99146 0.97357 1.20853 0.97202 1.00725 1.03648 1.20883 0.95870 1.03873 1.02368 1.19874 0.92806 0.97760 0.99069 1.24724 1.09105 0.98152 0.85286 1.86580 1.86443 1.38235 1.26408 0.93547 0.74213 0.77124 0.85429 1.41860 1.12485 1.29180 1.29768 1.23115 0.93390 0.97265 1.00882 0.90028 0.89312 0.87811 0.88877 0.90762 0.74270 0.84965 0.83322 0.83843 0.83601 0.88497 0.75304 1.20462 1.23566 0.74345 0.87972 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.59 16 2 S -0.31 -0.43 22.18 -56.49 -1.25 -1.68 16 3 C -0.07 0.25 4.15 31.12 0.13 0.38 16 4 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 5 C -0.14 0.20 7.47 31.12 0.23 0.43 16 6 C 0.12 -0.15 4.32 45.52 0.20 0.05 16 7 H 0.08 0.40 7.46 -2.39 -0.02 0.39 16 8 N -0.70 3.25 5.26 -440.04 -2.32 0.94 16 9 C 0.51 0.80 7.82 87.66 0.69 1.49 16 10 O -0.58 -7.97 15.63 -3.02 -0.05 -8.01 16 11 C -0.06 0.33 6.24 29.10 0.18 0.51 16 12 C 0.03 0.11 5.66 41.08 0.23 0.35 16 13 C -0.20 -1.31 10.77 22.14 0.24 -1.07 16 14 C -0.21 -1.50 9.37 22.14 0.21 -1.30 16 15 C 0.02 0.11 6.53 41.08 0.27 0.38 16 16 C -0.06 -0.11 3.07 71.24 0.22 0.11 16 17 O -0.57 -2.83 12.86 -148.98 -1.92 -4.75 16 18 Si 0.79 0.12 30.60 68.60 2.10 2.22 16 19 N -0.54 -2.08 6.07 -171.11 -1.04 -3.12 16 20 C -0.11 0.44 7.41 31.12 0.23 0.67 16 21 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 22 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 23 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.09 0.09 8.10 -2.39 -0.02 0.07 16 25 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.42 -5.02 8.70 -92.70 -0.81 -5.83 16 27 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 28 H 0.15 -1.64 8.14 -2.39 -0.02 -1.66 16 29 H 0.14 0.56 8.06 -2.91 -0.02 0.54 16 30 H 0.15 0.68 6.24 -2.91 -0.02 0.66 16 31 H 0.10 -0.37 7.96 -2.39 -0.02 -0.38 16 32 H 0.40 -1.54 8.74 -74.06 -0.65 -2.19 16 33 H -0.28 -0.72 7.11 99.48 0.71 -0.02 16 34 H -0.31 -2.89 7.11 99.48 0.71 -2.18 16 35 H 0.42 -0.16 8.96 -92.71 -0.83 -0.99 16 36 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.10 -0.20 8.10 -2.39 -0.02 -0.22 16 Total: 0.00 -25.70 327.86 -1.57 -27.28 By element: Atomic # 1 Polarization: -15.32 SS G_CDS: -1.14 Total: -16.47 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 4.04 Total: 3.59 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -3.35 Total: -2.18 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.96 Total: -12.76 kcal Atomic # 14 Polarization: 0.12 SS G_CDS: 2.10 Total: 2.22 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.25 Total: -1.68 kcal Total: -25.70 -1.57 -27.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_14644196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.335 kcal (2) G-P(sol) polarization free energy of solvation -25.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds