Wall clock time and date at job start Sat Mar 6 2021 19:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81396 * 103.00063 * 2 1 4 4 H 1.09007 * 112.85205 * 43.80616 * 3 2 1 5 5 C 1.53781 * 113.61762 * 175.00085 * 3 2 1 6 6 C 1.53781 * 87.08516 * 140.06549 * 5 3 2 7 7 H 1.08992 * 113.61186 * 219.93804 * 6 5 3 8 8 N 1.46501 * 113.61410 * 89.11364 * 6 5 3 9 9 C 1.34773 * 119.99557 * 155.00026 * 8 6 5 10 10 O 1.21278 * 120.00306 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99605 * 180.02562 * 9 8 6 12 12 O 1.42904 * 109.47031 * 180.02562 * 11 9 8 13 13 C 1.35895 * 117.00128 * 179.97438 * 12 11 9 14 14 C 1.38709 * 120.05826 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.02672 * 359.96119 * 14 13 12 16 16 O 1.42893 * 109.47388 * 75.01909 * 15 14 13 17 17 Si 1.86297 * 109.47043 * 195.02169 * 15 14 13 18 18 C 1.38164 * 119.94688 * 179.97438 * 14 13 12 19 19 C 1.38245 * 120.05645 * 0.02562 * 18 14 13 20 20 C 1.38290 * 120.10982 * 359.97438 * 19 18 14 21 21 C 1.38126 * 120.05768 * 0.02562 * 20 19 18 22 22 C 1.53778 * 113.69233 * 272.53747 * 3 2 1 23 23 H 1.08997 * 109.46801 * 299.99878 * 1 2 3 24 24 H 1.08996 * 109.47200 * 60.00126 * 1 2 3 25 25 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09001 * 113.61339 * 25.51471 * 5 3 2 27 27 H 1.08999 * 113.61625 * 254.61699 * 5 3 2 28 28 H 0.97002 * 120.00119 * 335.00414 * 8 6 5 29 29 H 1.09000 * 109.47423 * 60.00375 * 11 9 8 30 30 H 1.09002 * 109.47439 * 299.99751 * 11 9 8 31 31 H 1.09006 * 109.46723 * 315.01580 * 15 14 13 32 32 H 0.96704 * 114.00005 * 60.00039 * 16 15 14 33 33 H 1.48500 * 110.00041 * 58.67581 * 17 15 14 34 34 H 1.48496 * 110.00176 * 179.97438 * 17 15 14 35 35 H 1.08005 * 119.97654 * 179.97438 * 18 14 13 36 36 H 1.07995 * 119.94685 * 179.72562 * 19 18 14 37 37 H 1.07995 * 119.97112 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.03128 * 180.02562 * 21 20 19 39 39 H 1.08997 * 113.61510 * 105.45635 * 22 3 2 40 40 H 1.09007 * 113.61299 * 334.55162 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 3.7284 2.0520 0.1228 6 6 3.5203 3.1753 -0.9067 7 1 4.3238 3.2505 -1.6392 8 7 3.1758 4.4660 -0.3053 9 6 3.4488 5.6101 -0.9632 10 8 3.9792 5.5712 -2.0532 11 6 3.0950 6.9379 -0.3444 12 8 3.4803 7.9930 -1.2278 13 6 3.2293 9.2639 -0.8175 14 6 3.5768 10.3364 -1.6256 15 6 4.2343 10.0934 -2.9597 16 8 3.2591 9.6245 -3.8930 17 14 4.9776 11.6833 -3.5845 18 6 3.3200 11.6276 -1.2064 19 6 2.7177 11.8512 0.0177 20 6 2.3702 10.7838 0.8253 21 6 2.6248 9.4910 0.4107 22 6 2.3004 2.3836 -1.4068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.3573 1.2388 -0.2395 27 1 4.0259 2.4120 1.1077 28 1 2.7513 4.4971 0.5663 29 1 3.6200 7.0481 0.6044 30 1 2.0196 6.9835 -0.1720 31 1 5.0189 9.3451 -2.8472 32 1 2.5294 10.2412 -4.0426 33 1 5.9705 12.1980 -2.6075 34 1 5.6297 11.4569 -4.8993 35 1 3.5908 12.4630 -1.8351 36 1 2.5218 12.8614 0.3456 37 1 1.8994 10.9611 1.7809 38 1 2.3529 8.6577 1.0416 39 1 1.4451 3.0112 -1.6568 40 1 2.5389 1.6610 -2.1873 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_2989392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:20 Heat of formation + Delta-G solvation = -40.254771 kcal Electronic energy + Delta-G solvation = -22928.052835 eV Core-core repulsion = 19416.358740 eV Total energy + Delta-G solvation = -3511.694095 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.73358 -41.04951 -39.44634 -38.37222 -37.48047 -34.55226 -32.71984 -31.26680 -29.88648 -29.52623 -26.85540 -26.68492 -26.18183 -23.64128 -22.63022 -21.92713 -20.77563 -19.50891 -18.52083 -18.12287 -17.69487 -17.43657 -17.03688 -16.84004 -16.59060 -16.09271 -15.73166 -15.64313 -15.35497 -15.28950 -15.00019 -14.82254 -14.50044 -14.21580 -14.07950 -13.86600 -13.75702 -13.61103 -13.43063 -13.01619 -12.58457 -12.35762 -12.20118 -12.08716 -11.87703 -11.77158 -11.65810 -11.12232 -10.87557 -10.38445 -10.30374 -9.95612 -9.21779 -8.73020 -5.05722 0.24787 0.42132 0.73014 1.28472 1.33271 1.39127 1.60193 1.61948 1.95398 2.52839 2.71789 3.27330 3.31301 3.44130 3.55295 3.64200 3.75279 3.86774 3.89366 3.96483 4.01849 4.13150 4.28469 4.29835 4.31640 4.37025 4.41333 4.53053 4.63212 4.63703 4.67208 4.73421 4.82848 4.86109 4.92485 4.98282 5.28866 5.38163 5.39179 5.53977 5.76977 6.23300 6.40032 6.81201 7.03103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.304 6.304 3 C -0.068 4.068 4 H 0.124 0.876 5 C -0.106 4.106 6 C 0.122 3.878 7 H 0.088 0.912 8 N -0.691 5.691 9 C 0.516 3.484 10 O -0.568 6.568 11 C 0.038 3.962 12 O -0.316 6.316 13 C 0.125 3.875 14 C -0.172 4.172 15 C -0.074 4.074 16 O -0.557 6.557 17 Si 0.795 3.205 18 C -0.079 4.079 19 C -0.154 4.154 20 C -0.076 4.076 21 C -0.213 4.213 22 C -0.136 4.136 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.421 0.579 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.391 0.609 33 H -0.282 1.282 34 H -0.304 1.304 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 3.916 7.648 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.076 6.076 3 C -0.196 4.196 4 H 0.142 0.858 5 C -0.145 4.145 6 C 0.014 3.986 7 H 0.106 0.894 8 N -0.346 5.346 9 C 0.302 3.698 10 O -0.446 6.446 11 C -0.040 4.040 12 O -0.229 6.229 13 C 0.079 3.921 14 C -0.173 4.173 15 C -0.182 4.182 16 O -0.365 6.365 17 Si 0.700 3.300 18 C -0.096 4.096 19 C -0.171 4.171 20 C -0.094 4.094 21 C -0.232 4.232 22 C -0.178 4.178 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.260 0.740 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.240 0.760 33 H -0.208 1.208 34 H -0.233 1.233 35 H 0.174 0.826 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.016 2.792 6.471 8.112 hybrid contribution -0.833 -0.145 0.567 1.018 sum -4.850 2.646 7.038 8.948 Atomic orbital electron populations 1.23392 0.91839 1.07142 1.05723 1.87179 1.10262 1.12474 1.97711 1.24796 1.01092 0.92906 1.00833 0.85805 1.23123 0.93545 0.97045 1.00764 1.21743 0.98076 0.81974 0.96792 0.89389 1.45305 1.62566 1.03712 1.22995 1.20572 0.77864 0.86288 0.85073 1.90787 1.43361 1.87853 1.22603 1.22687 1.03918 0.83534 0.93846 1.86187 1.78536 1.12739 1.45394 1.19108 0.95913 0.83282 0.93749 1.19855 1.06853 0.92566 0.98000 1.25189 0.94774 1.10047 0.88192 1.86542 1.38376 1.49459 1.62084 0.94040 0.82516 0.77579 0.75839 1.21115 0.97026 0.94213 0.97238 1.21458 1.00530 1.00897 0.94264 1.21416 0.96399 0.91367 1.00235 1.21587 1.05408 1.00186 0.96000 1.23730 0.98809 0.99021 0.96199 0.89317 0.89971 0.87785 0.88088 0.87902 0.74024 0.85875 0.85879 0.90367 0.76005 1.20839 1.23270 0.82573 0.82776 0.82863 0.82876 0.90607 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.39 10.76 113.37 1.22 1.61 16 2 S -0.30 -0.33 22.18 -56.49 -1.25 -1.58 16 3 C -0.07 0.27 4.15 31.12 0.13 0.40 16 4 H 0.12 -0.98 8.14 -2.38 -0.02 -1.00 16 5 C -0.11 0.47 7.42 31.12 0.23 0.70 16 6 C 0.12 -0.12 4.32 45.52 0.20 0.08 16 7 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 8 N -0.69 2.57 5.26 -440.04 -2.32 0.25 16 9 C 0.52 2.15 7.91 87.66 0.69 2.84 16 10 O -0.57 -9.55 16.10 16.01 0.26 -9.29 16 11 C 0.04 -0.06 5.22 71.24 0.37 0.32 16 12 O -0.32 -2.67 9.00 -73.33 -0.66 -3.33 16 13 C 0.12 0.59 6.66 22.51 0.15 0.74 16 14 C -0.17 -0.72 5.27 -19.77 -0.10 -0.83 16 15 C -0.07 -0.51 2.38 71.24 0.17 -0.34 16 16 O -0.56 -4.71 12.88 -148.98 -1.92 -6.63 16 17 Si 0.80 1.19 29.92 68.60 2.05 3.24 16 18 C -0.08 0.13 8.66 22.25 0.19 0.32 16 19 C -0.15 0.61 10.04 22.28 0.22 0.84 16 20 C -0.08 0.32 10.04 22.26 0.22 0.54 16 21 C -0.21 0.41 9.04 22.37 0.20 0.61 16 22 C -0.14 0.20 7.47 31.12 0.23 0.44 16 23 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 24 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.10 -0.26 8.10 -2.39 -0.02 -0.28 16 27 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.42 -4.92 8.70 -92.71 -0.81 -5.73 16 29 H 0.12 -0.99 7.66 -2.39 -0.02 -1.00 16 30 H 0.12 -0.97 7.66 -2.39 -0.02 -0.99 16 31 H 0.08 1.01 7.83 -2.38 -0.02 0.99 16 32 H 0.39 -0.63 8.70 -74.05 -0.64 -1.27 16 33 H -0.28 -1.50 7.11 99.48 0.71 -0.79 16 34 H -0.30 -2.91 7.11 99.48 0.71 -2.21 16 35 H 0.16 -1.11 5.13 -2.91 -0.01 -1.12 16 36 H 0.15 -1.40 8.06 -2.91 -0.02 -1.43 16 37 H 0.15 -1.45 8.06 -2.91 -0.02 -1.48 16 38 H 0.15 -1.24 6.30 -2.91 -0.02 -1.26 16 39 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.10 0.06 8.10 -2.38 -0.02 0.04 16 Total: 0.00 -28.39 349.50 -0.05 -28.44 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: -0.35 Total: -19.36 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.13 Total: 8.26 kcal Atomic # 7 Polarization: 2.57 SS G_CDS: -2.32 Total: 0.25 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -2.32 Total: -19.25 kcal Atomic # 14 Polarization: 1.19 SS G_CDS: 2.05 Total: 3.24 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.25 Total: -1.58 kcal Total: -28.39 -0.05 -28.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_2989392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.817 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds