Wall clock time and date at job start Sat Mar 6 2021 19:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99516 * 2 1 4 4 H 1.09002 * 112.85201 * 43.80416 * 3 2 1 5 5 C 1.53784 * 113.61042 * 175.00108 * 3 2 1 6 6 C 1.53778 * 87.08187 * 139.98219 * 5 3 2 7 7 H 1.09000 * 113.61297 * 219.93823 * 6 5 3 8 8 N 1.46501 * 113.61808 * 89.11223 * 6 5 3 9 9 C 1.34773 * 119.99916 * 155.00224 * 8 6 5 10 10 O 1.21284 * 120.00245 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00187 * 179.97438 * 9 8 6 12 12 O 1.42902 * 109.47499 * 179.97438 * 11 9 8 13 13 C 1.35900 * 117.00003 * 179.97438 * 12 11 9 14 14 C 1.38736 * 120.05452 * 180.02562 * 13 12 11 15 15 C 1.38141 * 119.94155 * 180.02562 * 14 13 12 16 16 C 1.38263 * 120.06018 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.94583 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47590 * 300.00259 * 17 16 15 19 19 Si 1.86300 * 109.47007 * 179.97438 * 17 16 15 20 20 C 1.38271 * 120.10967 * 0.25348 * 16 15 14 21 21 C 1.38148 * 120.05274 * 359.44682 * 20 16 15 22 22 C 1.53783 * 113.61152 * 272.49197 * 3 2 1 23 23 H 1.09001 * 109.46901 * 60.00278 * 1 2 3 24 24 H 1.08999 * 109.46663 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47307 * 300.00183 * 1 2 3 26 26 H 1.08993 * 113.61812 * 25.43001 * 5 3 2 27 27 H 1.09006 * 113.61061 * 254.52435 * 5 3 2 28 28 H 0.96995 * 119.99923 * 335.00450 * 8 6 5 29 29 H 1.08999 * 109.46800 * 59.99840 * 11 9 8 30 30 H 1.08995 * 109.47383 * 300.00029 * 11 9 8 31 31 H 1.07995 * 120.02461 * 0.02562 * 14 13 12 32 32 H 1.07999 * 119.96989 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46613 * 60.00397 * 17 16 15 34 34 H 0.96695 * 114.00385 * 180.02562 * 18 17 16 35 35 H 1.48506 * 110.00048 * 60.00676 * 19 17 16 36 36 H 1.48502 * 109.99996 * 181.32001 * 19 17 16 37 37 H 1.07996 * 119.97091 * 179.70739 * 20 16 15 38 38 H 1.07997 * 120.02591 * 180.24693 * 21 20 16 39 39 H 1.09003 * 113.60758 * 105.47540 * 22 3 2 40 40 H 1.08995 * 113.61503 * 334.57132 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6108 2.3431 0.6953 5 6 3.7283 2.0521 0.1228 6 6 3.5205 3.1739 -0.9083 7 1 4.3243 3.2480 -1.6408 8 7 3.1760 4.4656 -0.3090 9 6 3.4492 5.6087 -0.9684 10 8 3.9808 5.5682 -2.0579 11 6 3.0944 6.9374 -0.3522 12 8 3.4813 7.9912 -1.2365 13 6 3.2294 9.2627 -0.8284 14 6 3.5785 10.3342 -1.6376 15 6 3.3219 11.6258 -1.2202 16 6 2.7183 11.8513 0.0031 17 6 2.4401 13.2614 0.4561 18 8 3.6686 13.9867 0.5377 19 14 1.6265 13.2262 2.1317 20 6 2.3747 10.7854 0.8140 21 6 2.6235 9.4916 0.3984 22 6 2.3008 2.3816 -1.4078 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 4.3572 1.2384 -0.2381 27 1 4.0255 2.4136 1.1073 28 1 2.7513 4.4980 0.5625 29 1 3.6184 7.0492 0.5969 30 1 2.0189 6.9828 -0.1810 31 1 4.0504 10.1586 -2.5930 32 1 3.5931 12.4602 -1.8500 33 1 1.7772 13.7486 -0.2590 34 1 3.5652 14.9044 0.8243 35 1 2.5198 12.5641 3.1162 36 1 1.3181 14.6093 2.5757 37 1 1.9076 10.9643 1.7711 38 1 2.3513 8.6592 1.0304 39 1 1.4456 3.0090 -1.6589 40 1 2.5395 1.6578 -2.1870 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_2989410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:23 Heat of formation + Delta-G solvation = -39.082628 kcal Electronic energy + Delta-G solvation = -22277.545487 eV Core-core repulsion = 18765.902220 eV Total energy + Delta-G solvation = -3511.643267 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66450 -40.97155 -39.50410 -38.70957 -37.31142 -34.50406 -32.43459 -31.81788 -29.90336 -29.67682 -26.81090 -26.44829 -25.89183 -24.03153 -22.45930 -21.80316 -20.72738 -19.50041 -18.61416 -18.43272 -17.77256 -17.42303 -17.12945 -16.81167 -16.74347 -15.90208 -15.74818 -15.60100 -15.46654 -15.29799 -14.87591 -14.47378 -14.46931 -14.10791 -14.04487 -13.99597 -13.78602 -13.57278 -13.49492 -13.39437 -12.54506 -12.48061 -12.17767 -11.91247 -11.83046 -11.75001 -11.61378 -11.07982 -10.83804 -10.47902 -10.25481 -10.03839 -9.21893 -8.69892 -4.91728 0.26673 0.30984 0.76572 1.32706 1.38381 1.41252 1.62289 1.63669 1.96923 2.54371 2.61969 3.31770 3.35790 3.40747 3.49294 3.68565 3.78614 3.82960 3.92582 3.97935 4.03750 4.09543 4.29651 4.31538 4.32650 4.41656 4.44791 4.46382 4.67307 4.67868 4.71146 4.78201 4.86743 4.89721 4.96750 4.97119 5.15707 5.24307 5.43133 5.50517 5.68419 6.24028 6.42302 6.60288 7.07758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.068 4.068 4 H 0.125 0.875 5 C -0.107 4.107 6 C 0.122 3.878 7 H 0.090 0.910 8 N -0.692 5.692 9 C 0.517 3.483 10 O -0.570 6.570 11 C 0.036 3.964 12 O -0.319 6.319 13 C 0.121 3.879 14 C -0.167 4.167 15 C -0.062 4.062 16 C -0.124 4.124 17 C -0.086 4.086 18 O -0.561 6.561 19 Si 0.769 3.231 20 C -0.078 4.078 21 C -0.199 4.199 22 C -0.136 4.136 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.422 0.578 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.394 0.606 35 H -0.295 1.295 36 H -0.290 1.290 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 0.111 5.866 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.079 6.079 3 C -0.197 4.197 4 H 0.143 0.857 5 C -0.146 4.146 6 C 0.015 3.985 7 H 0.108 0.892 8 N -0.346 5.346 9 C 0.303 3.697 10 O -0.448 6.448 11 C -0.042 4.042 12 O -0.233 6.233 13 C 0.076 3.924 14 C -0.185 4.185 15 C -0.080 4.080 16 C -0.125 4.125 17 C -0.194 4.194 18 O -0.371 6.371 19 Si 0.674 3.326 20 C -0.095 4.095 21 C -0.217 4.217 22 C -0.177 4.177 23 H 0.101 0.899 24 H 0.121 0.879 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.260 0.740 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.110 0.890 34 H 0.244 0.756 35 H -0.222 1.222 36 H -0.218 1.218 37 H 0.169 0.831 38 H 0.185 0.815 39 H 0.096 0.904 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.552 -1.222 5.558 7.951 hybrid contribution -0.090 1.886 -0.024 1.888 sum -5.642 0.664 5.534 7.930 Atomic orbital electron populations 1.23389 0.91832 1.07090 1.05749 1.87204 1.10276 1.12716 1.97723 1.24821 1.01108 0.92773 1.00978 0.85717 1.23129 0.93527 0.97148 1.00813 1.21736 0.98081 0.81945 0.96748 0.89228 1.45309 1.62506 1.03724 1.23052 1.20564 0.77796 0.86270 0.85044 1.90777 1.43423 1.87882 1.22705 1.22754 1.04394 0.83138 0.93866 1.86125 1.78682 1.12640 1.45812 1.19175 0.95860 0.83409 0.93986 1.20625 1.05528 0.91025 1.01369 1.20915 0.95493 0.95752 0.95846 1.19461 1.03231 0.94154 0.95623 1.25040 0.90512 0.91269 1.12592 1.86548 1.30843 1.29376 1.90307 0.94232 0.85122 0.80566 0.72638 1.21027 0.97816 0.91647 0.99044 1.21484 1.04811 0.99153 0.96252 1.23729 0.98875 0.99032 0.96071 0.89907 0.87896 0.89312 0.88183 0.87946 0.73955 0.85614 0.85136 0.85390 0.84838 0.89026 0.75597 1.22246 1.21790 0.83109 0.81462 0.90423 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.48 10.76 113.37 1.22 1.70 16 2 S -0.31 -0.07 22.17 -56.49 -1.25 -1.33 16 3 C -0.07 0.36 4.15 31.12 0.13 0.49 16 4 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 5 C -0.11 0.60 7.42 31.12 0.23 0.83 16 6 C 0.12 -0.34 4.32 45.52 0.20 -0.15 16 7 H 0.09 0.24 7.46 -2.39 -0.02 0.23 16 8 N -0.69 4.04 5.26 -440.04 -2.32 1.72 16 9 C 0.52 0.75 7.91 87.66 0.69 1.44 16 10 O -0.57 -7.79 16.10 16.00 0.26 -7.53 16 11 C 0.04 -0.16 5.22 71.23 0.37 0.22 16 12 O -0.32 -1.80 9.67 -73.38 -0.71 -2.51 16 13 C 0.12 0.46 6.69 22.51 0.15 0.61 16 14 C -0.17 -0.97 9.99 22.37 0.22 -0.74 16 15 C -0.06 -0.27 9.60 22.25 0.21 -0.05 16 16 C -0.12 -0.27 5.42 -19.85 -0.11 -0.38 16 17 C -0.09 0.07 2.81 71.23 0.20 0.27 16 18 O -0.56 -1.39 12.74 -148.98 -1.90 -3.28 16 19 Si 0.77 -2.60 29.78 68.60 2.04 -0.55 16 20 C -0.08 0.09 8.66 22.26 0.19 0.28 16 21 C -0.20 0.39 9.04 22.37 0.20 0.60 16 22 C -0.14 0.43 7.47 31.12 0.23 0.66 16 23 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 27 H 0.10 -0.89 8.14 -2.38 -0.02 -0.91 16 28 H 0.42 -5.79 8.70 -92.71 -0.81 -6.59 16 29 H 0.13 -1.32 7.66 -2.39 -0.02 -1.34 16 30 H 0.13 -1.50 7.66 -2.39 -0.02 -1.52 16 31 H 0.13 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 34 H 0.39 -2.18 8.74 -74.06 -0.65 -2.83 16 35 H -0.29 -0.95 7.11 99.48 0.71 -0.25 16 36 H -0.29 -0.38 7.11 99.48 0.71 0.32 16 37 H 0.15 -0.93 4.87 -2.91 -0.01 -0.95 16 38 H 0.17 -1.69 6.30 -2.91 -0.02 -1.70 16 39 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.10 -0.09 8.10 -2.39 -0.02 -0.11 16 Total: 0.00 -25.94 349.94 -0.08 -26.01 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -0.35 Total: -18.32 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 4.15 Total: 5.79 kcal Atomic # 7 Polarization: 4.04 SS G_CDS: -2.32 Total: 1.72 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -2.35 Total: -13.32 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.04 Total: -0.55 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.25 Total: -1.33 kcal Total: -25.94 -0.08 -26.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_2989410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.068 kcal (2) G-P(sol) polarization free energy of solvation -25.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds