Wall clock time and date at job start Sat Mar 6 2021 19:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81397 * 102.99940 * 2 1 4 4 H 1.08996 * 112.85414 * 316.19186 * 3 2 1 5 5 C 1.54051 * 113.69781 * 87.46666 * 3 2 1 6 6 C 1.53783 * 86.98749 * 139.98637 * 5 3 2 7 7 H 1.09000 * 113.61663 * 219.98148 * 6 5 3 8 8 N 1.46502 * 113.61363 * 89.15994 * 6 5 3 9 9 C 1.34778 * 119.99802 * 105.86192 * 8 6 5 10 10 O 1.21276 * 120.00029 * 0.02562 * 9 8 6 11 11 C 1.50692 * 119.99924 * 179.97438 * 9 8 6 12 12 F 1.39899 * 109.47204 * 60.00337 * 11 9 8 13 13 F 1.39905 * 109.47432 * 300.00691 * 11 9 8 14 14 O 1.42900 * 109.47397 * 180.02562 * 11 9 8 15 15 C 1.35899 * 117.00511 * 180.02562 * 14 11 9 16 16 C 1.38726 * 120.05721 * 180.02562 * 15 14 11 17 17 C 1.38153 * 119.94564 * 180.02562 * 16 15 14 18 18 C 1.38269 * 120.05022 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.93900 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47341 * 300.00123 * 19 18 17 21 21 Si 1.86300 * 109.46849 * 180.02562 * 19 18 17 22 22 C 1.38264 * 120.11486 * 0.25533 * 18 17 16 23 23 C 1.38143 * 120.05501 * 359.44957 * 22 18 17 24 24 C 1.53785 * 113.61098 * 185.00117 * 3 2 1 25 25 H 1.08996 * 109.47072 * 300.00058 * 1 2 3 26 26 H 1.09000 * 109.47027 * 60.00282 * 1 2 3 27 27 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 28 28 H 1.09001 * 113.61319 * 25.48777 * 5 3 2 29 29 H 1.08993 * 113.69914 * 254.50398 * 5 3 2 30 30 H 0.96997 * 120.00147 * 285.86939 * 8 6 5 31 31 H 1.07999 * 120.03394 * 359.97438 * 16 15 14 32 32 H 1.07995 * 119.97802 * 179.97438 * 17 16 15 33 33 H 1.09000 * 109.46989 * 60.00454 * 19 18 17 34 34 H 0.96693 * 114.00306 * 299.99773 * 20 19 18 35 35 H 1.48506 * 110.00048 * 58.68772 * 21 19 18 36 36 H 1.48502 * 109.99996 * 180.02562 * 21 19 18 37 37 H 1.08002 * 119.97450 * 179.70367 * 22 18 17 38 38 H 1.08001 * 120.02763 * 180.30227 * 23 22 18 39 39 H 1.09002 * 113.61784 * 105.39038 * 24 3 2 40 40 H 1.09001 * 113.69549 * 334.49173 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 -0.6953 5 6 2.3006 2.3848 1.4092 6 6 3.5202 3.1752 0.9067 7 1 4.3239 3.2505 1.6392 8 7 3.1759 4.4659 0.3053 9 6 3.4207 5.6088 0.9764 10 8 3.9264 5.5687 2.0780 11 6 3.0670 6.9365 0.3576 12 9 1.6919 6.9814 0.1042 13 9 3.7677 7.0929 -0.8432 14 8 3.4208 7.9901 1.2558 15 6 3.1657 9.2609 0.8474 16 6 3.4843 10.3321 1.6693 17 6 3.2235 11.6230 1.2520 18 6 2.6448 11.8477 0.0165 19 6 2.3608 13.2569 -0.4360 20 8 1.4640 13.8812 0.4848 21 14 1.5855 13.2209 -2.1296 22 6 2.3210 10.7815 -0.8021 23 6 2.5854 9.4891 -0.3920 24 6 3.7284 2.0519 -0.1228 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 2.5399 1.6624 2.1896 29 1 1.4463 3.0133 1.6604 30 1 2.7716 4.4980 -0.5759 31 1 3.9351 10.1571 2.6349 32 1 3.4709 12.4573 1.8916 33 1 3.2928 13.8208 -0.4746 34 1 0.6121 13.4319 0.5701 35 1 0.3301 12.4282 -2.0967 36 1 1.3011 14.6046 -2.5875 37 1 1.8647 10.9594 -1.7647 38 1 2.3368 8.6569 -1.0339 39 1 4.0259 2.4120 -1.1077 40 1 4.3585 1.2394 0.2389 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_4549640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:52 Heat of formation + Delta-G solvation = -130.116693 kcal Electronic energy + Delta-G solvation = -27995.891653 eV Core-core repulsion = 23541.392902 eV Total energy + Delta-G solvation = -4454.498751 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.92655 -48.89422 -41.65627 -41.32878 -39.69723 -39.14211 -37.38489 -34.84131 -32.46779 -32.04708 -29.86223 -29.29871 -26.86899 -26.71002 -25.94147 -24.49105 -22.95131 -22.49070 -21.00192 -20.69007 -19.80771 -19.72499 -18.69178 -18.06521 -17.52403 -17.23985 -16.95003 -16.69908 -16.45744 -16.25077 -15.96679 -15.80015 -15.65725 -15.44164 -15.41866 -15.37270 -15.14084 -15.08816 -14.51291 -14.42010 -14.40931 -14.24435 -14.08324 -13.80734 -13.59575 -13.55236 -13.04942 -12.63395 -12.43055 -12.27068 -11.94839 -11.79809 -11.69894 -11.61809 -10.88560 -10.65968 -10.58193 -10.19666 -9.60960 -8.70788 -4.93341 0.00058 0.14474 0.39702 0.56746 0.74528 1.29311 1.58638 1.59435 1.64171 1.94158 1.95090 2.43987 2.69216 3.17123 3.22592 3.29761 3.38289 3.52869 3.57614 3.63439 3.70639 3.87008 4.08049 4.19503 4.29384 4.31041 4.35206 4.39045 4.52604 4.58076 4.59996 4.65520 4.81932 4.83973 4.85761 4.87681 4.89167 5.03132 5.20911 5.33038 5.37019 5.75575 5.82671 6.38878 6.47023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.296 6.296 3 C -0.077 4.077 4 H 0.119 0.881 5 C -0.134 4.134 6 C 0.119 3.881 7 H 0.110 0.890 8 N -0.670 5.670 9 C 0.521 3.479 10 O -0.503 6.503 11 C 0.436 3.564 12 F -0.171 7.171 13 F -0.168 7.168 14 O -0.305 6.305 15 C 0.086 3.914 16 C -0.136 4.136 17 C -0.058 4.058 18 C -0.139 4.139 19 C -0.078 4.078 20 O -0.547 6.547 21 Si 0.762 3.238 22 C -0.077 4.077 23 C -0.193 4.193 24 C -0.103 4.103 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.423 0.577 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.131 0.869 34 H 0.386 0.614 35 H -0.282 1.282 36 H -0.302 1.302 37 H 0.154 0.846 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.091 -2.146 -4.590 5.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.068 6.068 3 C -0.206 4.206 4 H 0.138 0.862 5 C -0.175 4.175 6 C 0.013 3.987 7 H 0.128 0.872 8 N -0.324 5.324 9 C 0.299 3.701 10 O -0.376 6.376 11 C 0.358 3.642 12 F -0.153 7.153 13 F -0.150 7.150 14 O -0.222 6.222 15 C 0.043 3.957 16 C -0.155 4.155 17 C -0.076 4.076 18 C -0.139 4.139 19 C -0.187 4.187 20 O -0.355 6.355 21 Si 0.667 3.333 22 C -0.095 4.095 23 C -0.212 4.212 24 C -0.143 4.143 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.262 0.738 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.236 0.764 35 H -0.208 1.208 36 H -0.230 1.230 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.202 -2.563 -4.093 4.833 hybrid contribution -2.102 0.977 0.326 2.341 sum -2.304 -1.586 -3.767 4.692 Atomic orbital electron populations 1.23403 0.92147 1.07118 1.05676 1.87145 1.09927 1.12025 1.97686 1.24915 1.01314 0.93285 1.01063 0.86250 1.23818 0.98429 0.98993 0.96278 1.22043 0.99033 0.80259 0.97376 0.87226 1.45404 1.61471 1.03851 1.21632 1.19357 0.80611 0.83978 0.86129 1.90867 1.41502 1.85753 1.19490 1.21712 0.74872 0.90199 0.77436 1.93197 1.31427 1.96694 1.93965 1.93207 1.78611 1.96018 1.47141 1.86644 1.79169 1.13502 1.42881 1.19237 0.98926 0.82347 0.95169 1.20708 1.03695 0.90204 1.00849 1.21058 0.95160 0.95767 0.95603 1.20428 1.01670 0.95975 0.95856 1.25182 0.98941 0.91183 1.03358 1.86577 1.29890 1.55659 1.63369 0.94139 0.82996 0.78466 0.77665 1.21027 0.97757 0.90939 0.99733 1.21610 1.04017 0.99882 0.95650 1.23152 0.93517 0.96849 1.00735 0.89882 0.89562 0.87801 0.87341 0.90410 0.73795 0.83763 0.83242 0.85180 0.76432 1.20819 1.23018 0.82867 0.83980 0.87843 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.51 10.76 113.37 1.22 1.73 16 2 S -0.30 0.22 22.19 -56.49 -1.25 -1.04 16 3 C -0.08 0.46 4.16 31.21 0.13 0.59 16 4 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 5 C -0.13 0.66 7.49 31.21 0.23 0.89 16 6 C 0.12 -0.57 4.30 45.52 0.20 -0.38 16 7 H 0.11 -0.22 7.50 -2.39 -0.02 -0.24 16 8 N -0.67 3.07 5.26 -440.03 -2.32 0.75 16 9 C 0.52 1.38 7.34 87.65 0.64 2.03 16 10 O -0.50 -5.11 16.12 16.02 0.26 -4.85 16 11 C 0.44 1.13 2.05 71.23 0.15 1.27 16 12 F -0.17 -0.16 15.29 44.97 0.69 0.53 16 13 F -0.17 -0.10 15.30 44.97 0.69 0.59 16 14 O -0.30 -2.23 9.60 -73.38 -0.70 -2.93 16 15 C 0.09 0.44 6.48 22.51 0.15 0.59 16 16 C -0.14 -0.43 9.99 22.37 0.22 -0.21 16 17 C -0.06 -0.04 9.61 22.26 0.21 0.17 16 18 C -0.14 0.07 5.39 -19.85 -0.11 -0.04 16 19 C -0.08 0.15 2.82 71.24 0.20 0.35 16 20 O -0.55 -0.68 12.76 -148.98 -1.90 -2.58 16 21 Si 0.76 -2.32 29.78 68.60 2.04 -0.28 16 22 C -0.08 0.07 8.66 22.25 0.19 0.26 16 23 C -0.19 -0.39 8.26 22.37 0.18 -0.21 16 24 C -0.10 0.76 7.41 31.12 0.23 0.99 16 25 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.11 -0.43 8.11 -2.39 -0.02 -0.45 16 29 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.42 -4.24 8.70 -92.71 -0.81 -5.04 16 31 H 0.14 0.22 8.06 -2.91 -0.02 0.19 16 32 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 33 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 34 H 0.39 -1.56 8.70 -74.06 -0.64 -2.21 16 35 H -0.28 -0.19 7.11 99.48 0.71 0.52 16 36 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 37 H 0.15 -0.84 4.87 -2.91 -0.01 -0.86 16 38 H 0.14 -0.01 5.10 -2.91 -0.01 -0.02 16 39 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.11 -0.74 8.10 -2.39 -0.02 -0.76 16 Total: 0.00 -17.21 359.24 1.05 -16.16 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -0.31 Total: -14.40 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 3.85 Total: 8.05 kcal Atomic # 7 Polarization: 3.07 SS G_CDS: -2.32 Total: 0.75 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -2.35 Total: -10.37 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 1.38 Total: 1.12 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.04 Total: -0.28 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.25 Total: -1.04 kcal Total: -17.21 1.05 -16.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_4549640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.953 kcal (2) G-P(sol) polarization free energy of solvation -17.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds