Wall clock time and date at job start Sat Mar 6 2021 19:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99685 * 2 1 4 4 H 1.08997 * 112.85246 * 316.20076 * 3 2 1 5 5 C 1.53790 * 113.61243 * 87.50307 * 3 2 1 6 6 C 1.53786 * 87.07978 * 139.97806 * 5 3 2 7 7 H 1.08992 * 113.68933 * 220.00980 * 6 5 3 8 8 N 1.46495 * 113.61047 * 89.11635 * 6 5 3 9 9 C 1.34782 * 119.99943 * 107.50603 * 8 6 5 10 10 O 1.21553 * 119.99698 * 359.97438 * 9 8 6 11 11 C 1.47847 * 119.99837 * 179.97438 * 9 8 6 12 12 C 1.39556 * 120.13949 * 179.97438 * 11 9 8 13 13 C 1.50700 * 120.07573 * 359.97438 * 12 11 9 14 14 O 1.42902 * 109.47189 * 180.02562 * 13 12 11 15 15 C 1.35892 * 117.00066 * 179.97438 * 14 13 12 16 16 C 1.38720 * 120.05541 * 180.29555 * 15 14 13 17 17 C 1.38167 * 119.93876 * 180.25760 * 16 15 14 18 18 C 1.50706 * 119.96565 * 179.74636 * 17 16 15 19 19 O 1.42895 * 109.47147 * 64.72347 * 18 17 16 20 20 Si 1.86299 * 109.46748 * 184.71989 * 18 17 16 21 21 C 1.38244 * 120.05865 * 359.46477 * 17 16 15 22 22 C 1.38279 * 120.11081 * 0.23546 * 21 17 16 23 23 C 1.38127 * 120.05889 * 0.04413 * 22 21 17 24 24 C 1.37979 * 119.84928 * 180.27289 * 12 11 9 25 25 C 1.38337 * 120.14339 * 359.49236 * 24 12 11 26 26 C 1.38381 * 120.29313 * 0.50761 * 25 24 12 27 27 C 1.37931 * 120.14616 * 359.74658 * 26 25 24 28 28 C 1.53778 * 113.61439 * 184.99809 * 3 2 1 29 29 H 1.09001 * 109.47137 * 299.99574 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00161 * 1 2 3 31 31 H 1.09004 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.09002 * 113.61125 * 25.42953 * 5 3 2 33 33 H 1.09000 * 113.61263 * 254.52658 * 5 3 2 34 34 H 0.97006 * 120.00075 * 287.50132 * 8 6 5 35 35 H 1.08998 * 109.47384 * 59.99915 * 13 12 11 36 36 H 1.09004 * 109.46832 * 299.99723 * 13 12 11 37 37 H 1.07994 * 120.02627 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.47318 * 304.71460 * 18 17 16 39 39 H 0.96695 * 114.00385 * 59.99326 * 19 18 17 40 40 H 1.48504 * 109.99999 * 179.97438 * 20 18 17 41 41 H 1.48501 * 110.00135 * 301.31786 * 20 18 17 42 42 H 1.08003 * 119.94105 * 180.25468 * 21 17 16 43 43 H 1.08009 * 119.97140 * 180.02562 * 22 21 17 44 44 H 1.07996 * 120.02910 * 179.97438 * 23 22 21 45 45 H 1.08001 * 119.92679 * 179.74647 * 24 12 11 46 46 H 1.08010 * 119.85137 * 180.25734 * 25 24 12 47 47 H 1.08003 * 119.92612 * 179.72430 * 26 25 24 48 48 H 1.07997 * 120.07366 * 179.97438 * 27 26 25 49 49 H 1.09000 * 113.61556 * 105.47215 * 28 3 2 50 50 H 1.09005 * 113.69092 * 334.58088 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 -0.6952 5 6 2.3007 2.3816 1.4078 6 6 3.5206 3.1738 0.9085 7 1 4.3243 3.2479 1.6408 8 7 3.1761 4.4654 0.3091 9 6 3.4494 5.6087 0.9686 10 8 3.9813 5.5679 2.0608 11 6 3.1022 6.9122 0.3635 12 6 3.3834 8.0977 1.0439 13 6 4.0417 8.0530 2.3988 14 8 4.2221 9.3846 2.8850 15 6 4.8064 9.5224 4.1041 16 6 5.0066 10.7862 4.6397 17 6 5.6058 10.9238 5.8771 18 6 5.8288 12.2968 6.4570 19 8 4.5669 12.9185 6.7081 20 14 6.7774 12.1499 8.0537 21 6 5.9956 9.8029 6.5861 22 6 5.7915 8.5417 6.0571 23 6 5.1981 8.3989 4.8180 24 6 3.0517 9.3107 0.4761 25 6 2.4513 9.3537 -0.7694 26 6 2.1698 8.1818 -1.4494 27 6 2.4915 6.9624 -0.8908 28 6 3.7283 2.0521 -0.1228 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.5394 1.6577 2.1871 33 1 1.4455 3.0090 1.6589 34 1 2.7513 4.4979 -0.5624 35 1 5.0111 7.5617 2.3157 36 1 3.4103 7.4962 3.0913 37 1 4.6986 11.6620 4.0880 38 1 6.3978 12.9015 5.7508 39 1 4.0064 12.4339 7.3294 40 1 7.0044 13.4972 8.6354 41 1 6.0270 11.3013 9.0140 42 1 6.4601 9.9124 7.5550 43 1 6.0966 7.6675 6.6132 44 1 5.0393 7.4137 4.4051 45 1 3.2650 10.2288 1.0034 46 1 2.1974 10.3060 -1.2113 47 1 1.6969 8.2221 -2.4196 48 1 2.2709 6.0485 -1.4223 49 1 4.0255 2.4135 -1.1072 50 1 4.3584 1.2389 0.2376 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_4557126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:55 Heat of formation + Delta-G solvation = -7.990976 kcal Electronic energy + Delta-G solvation = -32193.638324 eV Core-core repulsion = 27859.363492 eV Total energy + Delta-G solvation = -4334.274831 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.138 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.88947 -41.23954 -40.19855 -39.12930 -38.78758 -37.38993 -34.73381 -33.32640 -32.52211 -32.05683 -31.02677 -29.84456 -27.99904 -26.83901 -26.81176 -26.35488 -24.76263 -23.68938 -23.21935 -21.88261 -21.82350 -20.65015 -19.19426 -19.10008 -18.06473 -17.82747 -17.38275 -17.21075 -17.11940 -17.07289 -16.56204 -16.25714 -16.23325 -16.03882 -15.78971 -15.49903 -15.42526 -15.32381 -14.88986 -14.59751 -14.52823 -14.44336 -14.14312 -14.12568 -14.05761 -13.72029 -13.62972 -13.57976 -13.33837 -13.03116 -12.82607 -12.58912 -12.46746 -12.22606 -12.21752 -12.01224 -11.83802 -11.61136 -11.60688 -10.99669 -10.85264 -10.67052 -10.34388 -10.01780 -9.98775 -9.84561 -9.29794 -8.71024 -4.90801 -0.29255 0.16928 0.24679 0.36373 0.74841 1.28768 1.59938 1.61296 1.71315 1.90518 1.91675 2.04109 2.62768 2.70722 3.30584 3.34510 3.38559 3.51000 3.52740 3.64438 3.69209 3.79655 3.82894 3.90256 4.02337 4.08371 4.17594 4.21197 4.23874 4.28989 4.30529 4.32976 4.38171 4.44296 4.45360 4.53024 4.64862 4.66279 4.66720 4.74544 4.77130 4.84822 4.87944 4.89516 4.94671 4.96155 5.16402 5.22732 5.32534 5.35894 5.41104 5.41932 5.44759 5.69533 5.80378 6.30854 6.35352 6.45582 7.02156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.302 6.302 3 C -0.071 4.071 4 H 0.120 0.880 5 C -0.135 4.135 6 C 0.124 3.876 7 H 0.097 0.903 8 N -0.694 5.694 9 C 0.560 3.440 10 O -0.566 6.566 11 C -0.147 4.147 12 C -0.051 4.051 13 C 0.117 3.883 14 O -0.327 6.327 15 C 0.116 3.884 16 C -0.140 4.140 17 C -0.081 4.081 18 C -0.087 4.087 19 O -0.548 6.548 20 Si 0.777 3.223 21 C -0.157 4.157 22 C -0.075 4.075 23 C -0.210 4.210 24 C -0.123 4.123 25 C -0.089 4.089 26 C -0.123 4.123 27 C -0.076 4.076 28 C -0.108 4.108 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.386 0.614 40 H -0.301 1.301 41 H -0.280 1.280 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.151 0.849 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.099 0.901 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -2.487 -4.937 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.074 6.074 3 C -0.200 4.200 4 H 0.138 0.862 5 C -0.176 4.176 6 C 0.016 3.984 7 H 0.116 0.884 8 N -0.346 5.346 9 C 0.349 3.651 10 O -0.446 6.446 11 C -0.151 4.151 12 C -0.052 4.052 13 C 0.043 3.957 14 O -0.242 6.242 15 C 0.071 3.929 16 C -0.158 4.158 17 C -0.081 4.081 18 C -0.195 4.195 19 O -0.356 6.356 20 Si 0.682 3.318 21 C -0.174 4.174 22 C -0.092 4.092 23 C -0.228 4.228 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.141 4.141 27 C -0.095 4.095 28 C -0.147 4.147 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.253 0.747 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.235 0.765 40 H -0.229 1.229 41 H -0.206 1.206 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.169 0.831 47 H 0.179 0.821 48 H 0.177 0.823 49 H 0.117 0.883 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.107 -2.747 -3.915 4.784 hybrid contribution -2.368 0.717 -0.188 2.481 sum -2.475 -2.030 -4.104 5.204 Atomic orbital electron populations 1.23391 0.92020 1.07103 1.05655 1.87156 1.10065 1.12446 1.97718 1.24819 1.01186 0.92910 1.01067 0.86225 1.23726 0.98843 0.99021 0.95999 1.21763 0.98119 0.81746 0.96725 0.88444 1.45430 1.62119 1.04232 1.22785 1.18446 0.77642 0.84527 0.84480 1.90747 1.44289 1.87787 1.21799 1.19624 1.06455 0.91384 0.97597 1.19708 0.97540 0.93570 0.94398 1.21519 1.00690 0.80758 0.92772 1.85931 1.75756 1.30695 1.31779 1.19160 0.94137 0.94638 0.84922 1.20324 1.03868 0.94928 0.96723 1.20162 0.97940 0.96077 0.93927 1.25365 0.90714 0.92021 1.11436 1.86571 1.28883 1.52430 1.67730 0.93835 0.86866 0.78070 0.73050 1.21202 1.03094 0.91994 1.01149 1.21225 0.95591 0.98361 0.94070 1.21548 1.05353 0.98112 0.97819 1.21123 0.99140 0.97358 0.96466 1.21772 0.95006 1.00437 0.93490 1.21569 0.99609 0.91475 1.01448 1.21573 0.95174 1.00191 0.92549 1.23135 0.93409 0.97332 1.00802 0.89987 0.89459 0.87799 0.88217 0.90817 0.74698 0.90329 0.90595 0.85427 0.85730 0.76468 1.22889 1.20606 0.83439 0.83056 0.84936 0.84969 0.83124 0.82101 0.82272 0.88267 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.44 10.76 113.37 1.22 1.65 16 2 S -0.30 -0.12 22.18 -56.49 -1.25 -1.37 16 3 C -0.07 0.33 4.15 31.12 0.13 0.46 16 4 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 5 C -0.13 0.40 7.47 31.13 0.23 0.64 16 6 C 0.12 -0.35 4.32 45.52 0.20 -0.15 16 7 H 0.10 0.11 7.46 -2.39 -0.02 0.09 16 8 N -0.69 2.61 5.21 -442.91 -2.31 0.30 16 9 C 0.56 1.58 7.75 86.79 0.67 2.25 16 10 O -0.57 -5.28 13.01 -3.88 -0.05 -5.33 16 11 C -0.15 -0.22 5.87 -20.09 -0.12 -0.33 16 12 C -0.05 -0.25 5.91 -19.61 -0.12 -0.37 16 13 C 0.12 0.87 3.38 71.24 0.24 1.12 16 14 O -0.33 -2.95 8.62 -92.33 -0.80 -3.74 16 15 C 0.12 0.98 6.69 22.51 0.15 1.13 16 16 C -0.14 -0.98 9.62 22.37 0.22 -0.77 16 17 C -0.08 -0.29 5.35 -19.88 -0.11 -0.40 16 18 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 19 O -0.55 -2.67 12.83 -148.98 -1.91 -4.58 16 20 Si 0.78 -0.73 29.88 68.60 2.05 1.32 16 21 C -0.16 -0.25 8.67 22.28 0.19 -0.05 16 22 C -0.07 -0.19 10.04 22.25 0.22 0.03 16 23 C -0.21 -1.31 9.04 22.37 0.20 -1.11 16 24 C -0.12 -0.35 9.37 22.23 0.21 -0.14 16 25 C -0.09 0.20 10.04 22.33 0.22 0.43 16 26 C -0.12 0.66 10.03 22.23 0.22 0.88 16 27 C -0.08 0.37 9.54 22.52 0.21 0.58 16 28 C -0.11 0.58 7.41 31.12 0.23 0.81 16 29 H 0.08 -0.38 8.14 -2.39 -0.02 -0.39 16 30 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.41 -4.03 6.74 -92.70 -0.62 -4.66 16 35 H 0.08 0.69 6.86 -2.39 -0.02 0.68 16 36 H 0.08 0.69 6.86 -2.38 -0.02 0.68 16 37 H 0.13 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.12 0.02 7.96 -2.39 -0.02 0.01 16 39 H 0.39 -0.29 8.70 -74.06 -0.64 -0.93 16 40 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 41 H -0.28 -0.65 7.01 99.48 0.70 0.05 16 42 H 0.15 -0.43 4.84 -2.91 -0.01 -0.45 16 43 H 0.15 -0.35 8.06 -2.91 -0.02 -0.38 16 44 H 0.13 0.83 6.30 -2.91 -0.02 0.81 16 45 H 0.13 0.50 7.00 -2.91 -0.02 0.48 16 46 H 0.15 -1.00 8.06 -2.91 -0.02 -1.02 16 47 H 0.16 -1.78 8.06 -2.91 -0.02 -1.80 16 48 H 0.16 -1.92 6.41 -2.91 -0.02 -1.93 16 49 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 50 H 0.10 -0.41 8.10 -2.38 -0.02 -0.43 16 Total: 0.00 -19.44 420.47 0.11 -19.33 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.25 Total: -12.62 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 4.64 Total: 6.70 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -2.31 Total: 0.30 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -2.76 Total: -13.65 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.32 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.25 Total: -1.37 kcal Total: -19.44 0.11 -19.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_4557126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.339 kcal (2) G-P(sol) polarization free energy of solvation -19.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds