Wall clock time and date at job start Sat Mar 6 2021 19:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00067 * 2 1 4 4 H 1.09000 * 112.90991 * 43.75060 * 3 2 1 5 5 C 1.53786 * 113.61571 * 174.99869 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02404 * 5 3 2 7 7 H 1.09000 * 113.61379 * 219.89528 * 6 5 3 8 8 N 1.46505 * 113.61334 * 89.07333 * 6 5 3 9 9 C 1.34776 * 119.99597 * 154.99978 * 8 6 5 10 10 O 1.21275 * 120.00338 * 0.02562 * 9 8 6 11 11 C 1.50705 * 119.99715 * 180.02562 * 9 8 6 12 12 O 1.42901 * 109.46987 * 180.02562 * 11 9 8 13 13 C 1.35901 * 116.99924 * 180.02562 * 12 11 9 14 14 C 1.38711 * 120.05655 * 179.72637 * 13 12 11 15 15 C 1.38162 * 119.94263 * 179.67258 * 14 13 12 16 16 C 1.50708 * 119.96982 * 180.31497 * 15 14 13 17 17 O 1.42893 * 109.47094 * 300.29934 * 16 15 14 18 18 Si 1.86302 * 109.46843 * 180.30261 * 16 15 14 19 19 C 1.38236 * 120.05635 * 0.61938 * 15 14 13 20 20 C 1.38292 * 120.11436 * 359.67420 * 19 15 14 21 21 C 1.38125 * 120.04978 * 0.02562 * 20 19 15 22 22 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 23 23 H 1.09004 * 109.46830 * 59.99795 * 1 2 3 24 24 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46955 * 300.00272 * 1 2 3 26 26 H 1.09002 * 113.61357 * 25.43320 * 5 3 2 27 27 H 1.09002 * 113.61608 * 254.61482 * 5 3 2 28 28 H 0.96995 * 120.00170 * 335.00476 * 8 6 5 29 29 H 1.09000 * 109.46532 * 299.99611 * 11 9 8 30 30 H 1.08993 * 109.47264 * 60.00029 * 11 9 8 31 31 H 1.08002 * 120.02341 * 359.97438 * 14 13 12 32 32 H 1.08999 * 109.46648 * 60.30427 * 16 15 14 33 33 H 0.96702 * 114.00343 * 300.00258 * 17 16 15 34 34 H 1.48494 * 110.00109 * 180.02562 * 18 16 15 35 35 H 1.48501 * 110.00013 * 301.31931 * 18 16 15 36 36 H 1.08005 * 119.94639 * 179.69690 * 19 15 14 37 37 H 1.07998 * 119.97612 * 180.02562 * 20 19 15 38 38 H 1.08000 * 120.02558 * 180.02562 * 21 20 19 39 39 H 1.09005 * 113.61471 * 139.98321 * 22 6 5 40 40 H 1.09003 * 113.61469 * 270.88099 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3441 0.6943 5 6 3.7284 2.0520 0.1228 6 6 3.5229 3.1750 -0.9074 7 1 4.3278 3.2495 -1.6386 8 7 3.1783 4.4663 -0.3070 9 6 3.4534 5.6100 -0.9648 10 8 3.9855 5.5703 -2.0538 11 6 3.0995 6.9383 -0.3470 12 8 3.4872 7.9927 -1.2301 13 6 3.2373 9.2641 -0.8201 14 6 3.5928 10.3362 -1.6252 15 6 3.3315 11.6275 -1.2091 16 6 3.7110 12.7926 -2.0866 17 8 5.1213 12.7764 -2.3162 18 14 3.2373 14.3850 -1.2436 19 6 2.7281 11.8520 0.0142 20 6 2.3783 10.7851 0.8215 21 6 2.6317 9.4921 0.4073 22 6 2.3033 2.3842 -1.4093 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.3573 1.2381 -0.2381 27 1 4.0259 2.4120 1.1077 28 1 2.7524 4.4980 0.5639 29 1 2.0239 6.9846 -0.1765 30 1 3.6230 7.0483 0.6027 31 1 4.0689 10.1615 -2.5788 32 1 3.1868 12.7158 -3.0391 33 1 5.6518 12.8415 -1.5103 34 1 3.6057 15.5416 -2.0989 35 1 1.7777 14.4004 -0.9705 36 1 2.5292 12.8624 0.3399 37 1 1.9066 10.9631 1.7766 38 1 2.3580 8.6591 1.0379 39 1 1.4488 3.0125 -1.6610 40 1 2.5425 1.6611 -2.1892 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:43:59 Heat of formation + Delta-G solvation = -40.560693 kcal Electronic energy + Delta-G solvation = -22359.294095 eV Core-core repulsion = 18847.586735 eV Total energy + Delta-G solvation = -3511.707360 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68885 -41.00115 -39.53742 -38.72305 -37.23019 -34.53019 -32.46537 -31.67087 -29.86801 -29.42235 -26.88899 -26.82656 -26.05096 -23.67452 -22.89003 -21.71616 -20.74253 -19.36636 -18.66741 -17.81946 -17.68883 -17.45597 -17.18222 -16.94704 -16.70936 -16.18706 -15.84950 -15.68346 -15.39389 -15.26849 -14.90561 -14.67418 -14.49070 -14.20151 -14.06996 -14.04166 -13.79334 -13.58537 -13.41185 -12.93558 -12.63674 -12.54563 -12.13432 -12.00346 -11.84883 -11.68274 -11.63817 -11.10693 -10.85977 -10.51698 -10.28302 -9.92267 -9.29525 -8.71540 -4.99164 0.20099 0.38267 0.74676 1.26801 1.35261 1.42001 1.61706 1.64789 1.96932 2.52821 2.67019 3.28795 3.33963 3.45002 3.52080 3.66134 3.66928 3.83213 3.90590 3.98753 4.05853 4.12177 4.24241 4.29364 4.30672 4.34885 4.43693 4.49033 4.61974 4.65675 4.68255 4.75777 4.84607 4.87566 4.94802 4.97490 5.23671 5.36352 5.40573 5.44489 5.68692 6.23732 6.40768 6.74409 7.04955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.305 6.305 3 C -0.069 4.069 4 H 0.124 0.876 5 C -0.106 4.106 6 C 0.122 3.878 7 H 0.090 0.910 8 N -0.691 5.691 9 C 0.516 3.484 10 O -0.571 6.571 11 C 0.039 3.961 12 O -0.324 6.324 13 C 0.114 3.886 14 C -0.151 4.151 15 C -0.084 4.084 16 C -0.087 4.087 17 O -0.558 6.558 18 Si 0.797 3.203 19 C -0.158 4.158 20 C -0.070 4.070 21 C -0.202 4.202 22 C -0.137 4.137 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.422 0.578 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.396 0.604 34 H -0.302 1.302 35 H -0.279 1.279 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.075 0.925 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 0.512 10.371 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.077 6.077 3 C -0.197 4.197 4 H 0.142 0.858 5 C -0.145 4.145 6 C 0.015 3.985 7 H 0.108 0.892 8 N -0.345 5.345 9 C 0.302 3.698 10 O -0.449 6.449 11 C -0.039 4.039 12 O -0.238 6.238 13 C 0.069 3.931 14 C -0.170 4.170 15 C -0.085 4.085 16 C -0.195 4.195 17 O -0.366 6.366 18 Si 0.702 3.298 19 C -0.175 4.175 20 C -0.088 4.088 21 C -0.220 4.220 22 C -0.178 4.178 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.260 0.740 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.246 0.754 34 H -0.231 1.231 35 H -0.206 1.206 36 H 0.166 0.834 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.094 0.906 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.390 0.156 8.788 9.421 hybrid contribution -1.157 0.155 -0.563 1.296 sum -4.547 0.311 8.226 9.404 Atomic orbital electron populations 1.23391 0.91904 1.07109 1.05710 1.87189 1.10195 1.12573 1.97704 1.24860 1.01171 0.92838 1.00880 0.85753 1.23120 0.93460 0.97082 1.00825 1.21739 0.98054 0.81962 0.96793 0.89234 1.45308 1.62417 1.03710 1.23113 1.20588 0.77811 0.86314 0.85048 1.90778 1.43439 1.87893 1.22750 1.22723 1.04087 0.83121 0.93962 1.86124 1.78871 1.12814 1.45957 1.19186 0.96425 0.83191 0.94309 1.20288 1.04958 0.90909 1.00832 1.20205 0.98531 0.93835 0.95906 1.25437 0.85555 1.05565 1.02983 1.86476 1.15487 1.96915 1.37764 0.93508 0.79851 0.71583 0.84895 1.21225 1.01796 1.00575 0.93925 1.21347 0.96254 0.90926 1.00227 1.21637 1.04501 1.00137 0.95751 1.23781 0.98838 0.99037 0.96139 0.89991 0.87847 0.89312 0.88126 0.87844 0.73954 0.85634 0.85319 0.87159 0.88219 0.75442 1.23066 1.20609 0.83353 0.81877 0.82057 0.90597 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.46 10.76 113.37 1.22 1.68 16 2 S -0.30 -0.11 22.18 -56.49 -1.25 -1.36 16 3 C -0.07 0.35 4.17 31.21 0.13 0.48 16 4 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 5 C -0.11 0.59 7.41 31.12 0.23 0.82 16 6 C 0.12 -0.30 4.32 45.52 0.20 -0.11 16 7 H 0.09 0.28 7.46 -2.39 -0.02 0.26 16 8 N -0.69 3.79 5.26 -440.03 -2.32 1.47 16 9 C 0.52 1.04 7.91 87.66 0.69 1.73 16 10 O -0.57 -8.27 16.10 16.02 0.26 -8.02 16 11 C 0.04 -0.15 5.22 71.24 0.37 0.22 16 12 O -0.32 -2.11 9.67 -73.40 -0.71 -2.82 16 13 C 0.11 0.44 6.69 22.51 0.15 0.59 16 14 C -0.15 -0.98 9.55 22.36 0.21 -0.77 16 15 C -0.08 -0.17 5.39 -19.88 -0.11 -0.28 16 16 C -0.09 -0.15 2.82 71.24 0.20 0.05 16 17 O -0.56 -1.79 12.76 -148.98 -1.90 -3.70 16 18 Si 0.80 -1.80 29.79 68.60 2.04 0.24 16 19 C -0.16 0.42 8.67 22.28 0.19 0.61 16 20 C -0.07 0.35 10.04 22.26 0.22 0.57 16 21 C -0.20 0.70 9.04 22.37 0.20 0.90 16 22 C -0.14 0.37 7.48 31.21 0.23 0.60 16 23 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 27 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.42 -5.68 8.70 -92.71 -0.81 -6.49 16 29 H 0.13 -1.32 7.66 -2.39 -0.02 -1.33 16 30 H 0.13 -1.39 7.66 -2.39 -0.02 -1.41 16 31 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 33 H 0.40 -2.16 8.70 -74.06 -0.64 -2.81 16 34 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 35 H -0.28 -0.36 7.11 99.48 0.71 0.34 16 36 H 0.15 -1.07 4.87 -2.91 -0.01 -1.08 16 37 H 0.16 -1.86 8.06 -2.91 -0.02 -1.88 16 38 H 0.16 -1.74 6.30 -2.91 -0.02 -1.75 16 39 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.10 -0.05 8.11 -2.39 -0.02 -0.07 16 Total: 0.00 -26.84 349.93 -0.07 -26.91 By element: Atomic # 1 Polarization: -19.50 SS G_CDS: -0.35 Total: -19.84 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 4.15 Total: 7.11 kcal Atomic # 7 Polarization: 3.79 SS G_CDS: -2.32 Total: 1.47 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -2.35 Total: -14.53 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.04 Total: 0.24 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.25 Total: -1.36 kcal Total: -26.84 -0.07 -26.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.648 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds