Wall clock time and date at job start Sat Mar 6 2021 19:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81400 * 103.00294 * 2 1 4 4 H 1.09005 * 112.84546 * 43.80015 * 3 2 1 5 5 C 1.53772 * 113.61640 * 174.99903 * 3 2 1 6 6 C 1.53783 * 87.08163 * 139.98070 * 5 3 2 7 7 H 1.09001 * 113.61103 * 219.93721 * 6 5 3 8 8 N 1.46492 * 113.61322 * 89.11633 * 6 5 3 9 9 C 1.34782 * 120.00067 * 155.00303 * 8 6 5 10 10 O 1.21283 * 119.99581 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00551 * 179.97438 * 9 8 6 12 12 O 1.42892 * 109.47260 * 179.97438 * 11 9 8 13 13 C 1.35917 * 116.99952 * 180.02562 * 12 11 9 14 14 C 1.38788 * 120.06323 * 179.97438 * 13 12 11 15 15 Br 1.89107 * 120.03252 * 0.04111 * 14 13 12 16 16 C 1.38233 * 119.93242 * 179.76660 * 14 13 12 17 17 C 1.38250 * 120.04414 * 0.50689 * 16 14 13 18 18 C 1.50699 * 119.94218 * 179.76810 * 17 16 14 19 19 O 1.42901 * 109.46830 * 119.72225 * 18 17 16 20 20 Si 1.86298 * 109.46950 * 359.72662 * 18 17 16 21 21 C 1.38278 * 120.11351 * 359.48739 * 17 16 14 22 22 C 1.38146 * 120.07848 * 0.25952 * 21 17 16 23 23 C 1.53777 * 113.61268 * 272.50038 * 3 2 1 24 24 H 1.09002 * 109.47166 * 60.00141 * 1 2 3 25 25 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47208 * 299.99960 * 1 2 3 27 27 H 1.08998 * 113.61559 * 25.43476 * 5 3 2 28 28 H 1.09000 * 113.69370 * 254.54015 * 5 3 2 29 29 H 0.96996 * 120.00433 * 334.99429 * 8 6 5 30 30 H 1.09003 * 109.46946 * 59.99270 * 11 9 8 31 31 H 1.09003 * 109.46577 * 300.00388 * 11 9 8 32 32 H 1.08004 * 119.98274 * 180.25301 * 16 14 13 33 33 H 1.08991 * 109.47351 * 239.72373 * 18 17 16 34 34 H 0.96708 * 114.00246 * 299.99864 * 19 18 17 35 35 H 1.48506 * 109.99834 * 180.02562 * 20 18 17 36 36 H 1.48502 * 110.00011 * 301.31529 * 20 18 17 37 37 H 1.08007 * 119.96246 * 180.27812 * 21 17 16 38 38 H 1.07993 * 120.03063 * 180.02562 * 22 21 17 39 39 H 1.09000 * 113.61970 * 105.46594 * 23 3 2 40 40 H 1.09004 * 113.61400 * 334.55969 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0519 0.1228 6 6 3.5206 3.1737 -0.9084 7 1 4.3245 3.2478 -1.6408 8 7 3.1762 4.4653 -0.3090 9 6 3.4495 5.6086 -0.9685 10 8 3.9809 5.5679 -2.0579 11 6 3.0947 6.9373 -0.3523 12 8 3.4817 7.9909 -1.2365 13 6 3.2310 9.2627 -0.8279 14 6 3.5812 10.3347 -1.6369 15 35 4.4070 10.0276 -3.3101 16 6 3.3205 11.6269 -1.2208 17 6 2.7211 11.8519 0.0046 18 6 2.4428 13.2618 0.4582 19 8 1.0381 13.4280 0.6619 20 14 3.0275 14.4597 -0.8432 21 6 2.3713 10.7852 0.8120 22 6 2.6248 9.4917 0.3988 23 6 2.3008 2.3815 -1.4077 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.3572 1.2381 -0.2381 28 1 4.0270 2.4132 1.1069 29 1 2.7514 4.4978 0.5624 30 1 3.6188 7.0490 0.5970 31 1 2.0192 6.9827 -0.1809 32 1 3.5890 12.4616 -1.8515 33 1 2.9706 13.4538 1.3923 34 1 0.5047 13.2723 -0.1296 35 1 2.7593 15.8538 -0.4075 36 1 4.4807 14.2751 -1.0872 37 1 1.8991 10.9637 1.7669 38 1 2.3509 8.6592 1.0298 39 1 1.4456 3.0089 -1.6589 40 1 2.5395 1.6577 -2.1870 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_6201210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:12 Heat of formation + Delta-G solvation = -32.747642 kcal Electronic energy + Delta-G solvation = -24383.646680 eV Core-core repulsion = 20532.460116 eV Total energy + Delta-G solvation = -3851.186564 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.018 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76058 -41.07424 -39.60793 -38.78904 -37.20420 -34.49881 -33.48253 -32.14655 -30.53350 -29.85975 -29.57407 -26.81426 -26.56680 -25.97103 -24.04049 -22.53500 -21.92435 -20.73280 -19.55597 -18.68373 -18.12414 -17.78707 -17.50160 -17.10243 -16.84424 -16.47261 -16.02186 -15.87170 -15.70403 -15.68725 -15.34430 -14.96132 -14.78585 -14.49279 -14.29944 -14.08672 -14.05309 -13.98167 -13.59940 -13.57152 -13.41218 -12.55515 -12.40831 -12.24783 -12.20301 -11.86699 -11.86417 -11.83123 -11.61571 -11.20556 -11.07124 -10.84199 -10.46607 -10.24657 -9.99929 -9.31496 -8.70399 -5.03607 -0.03574 0.07992 0.63658 0.76046 1.28543 1.34515 1.39825 1.58921 1.62984 1.92864 2.39929 2.45002 3.31519 3.35447 3.44377 3.49014 3.55794 3.68117 3.78694 3.81958 3.92308 4.02201 4.06092 4.08885 4.30737 4.31892 4.34119 4.45595 4.46396 4.62287 4.67452 4.70028 4.78187 4.78651 4.86217 4.89271 4.97023 5.03396 5.30064 5.41923 5.47418 6.04280 6.39303 6.77346 7.08901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.068 4.068 4 H 0.125 0.875 5 C -0.107 4.107 6 C 0.124 3.876 7 H 0.090 0.910 8 N -0.693 5.693 9 C 0.516 3.484 10 O -0.564 6.564 11 C 0.034 3.966 12 O -0.304 6.304 13 C 0.150 3.850 14 C -0.140 4.140 15 Br -0.050 7.050 16 C -0.056 4.056 17 C -0.151 4.151 18 C -0.052 4.052 19 O -0.550 6.550 20 Si 0.744 3.256 21 C -0.033 4.033 22 C -0.194 4.194 23 C -0.136 4.136 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.422 0.578 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.396 0.604 35 H -0.293 1.293 36 H -0.289 1.289 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.077 0.923 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -0.798 5.971 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.079 6.079 3 C -0.197 4.197 4 H 0.143 0.857 5 C -0.146 4.146 6 C 0.016 3.984 7 H 0.108 0.892 8 N -0.347 5.347 9 C 0.302 3.698 10 O -0.441 6.441 11 C -0.043 4.043 12 O -0.217 6.217 13 C 0.102 3.898 14 C -0.220 4.220 15 Br 0.035 6.965 16 C -0.075 4.075 17 C -0.153 4.153 18 C -0.164 4.164 19 O -0.358 6.358 20 Si 0.651 3.349 21 C -0.052 4.052 22 C -0.213 4.213 23 C -0.177 4.177 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.260 0.740 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.246 0.754 35 H -0.221 1.221 36 H -0.216 1.216 37 H 0.173 0.827 38 H 0.191 0.809 39 H 0.095 0.905 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.673 -1.134 4.802 6.151 hybrid contribution -0.880 0.605 0.987 1.454 sum -4.554 -0.529 5.789 7.384 Atomic orbital electron populations 1.23386 0.91862 1.07087 1.05728 1.87205 1.10243 1.12752 1.97722 1.24817 1.01124 0.92753 1.00986 0.85747 1.23124 0.93480 0.97181 1.00837 1.21716 0.98016 0.81945 0.96694 0.89210 1.45304 1.62609 1.03722 1.23054 1.20509 0.77969 0.86169 0.85126 1.90801 1.43086 1.87772 1.22490 1.22822 1.04495 0.83128 0.93899 1.86240 1.77944 1.12090 1.45392 1.18794 0.94518 0.83377 0.93133 1.21142 1.10941 0.94471 0.95475 1.96779 1.79688 1.97019 1.22971 1.20921 0.96433 0.94167 0.95965 1.20300 1.02976 0.97277 0.94705 1.24815 0.86839 0.96618 1.08122 1.86475 1.15564 1.92657 1.41108 0.93983 0.80491 0.75899 0.84486 1.21205 0.93918 0.90537 0.99514 1.21609 1.04334 1.00009 0.95351 1.23725 0.98913 0.99043 0.96039 0.89924 0.87903 0.89329 0.88240 0.87938 0.74023 0.85222 0.85048 0.83698 0.86437 0.75381 1.22069 1.21619 0.82664 0.80907 0.90456 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.50 10.76 113.37 1.22 1.72 16 2 S -0.31 -0.02 22.17 -56.49 -1.25 -1.27 16 3 C -0.07 0.38 4.15 31.12 0.13 0.51 16 4 H 0.12 -1.19 8.14 -2.38 -0.02 -1.21 16 5 C -0.11 0.65 7.42 31.12 0.23 0.88 16 6 C 0.12 -0.42 4.32 45.52 0.20 -0.22 16 7 H 0.09 0.20 7.46 -2.39 -0.02 0.18 16 8 N -0.69 4.66 5.26 -440.04 -2.32 2.34 16 9 C 0.52 0.09 7.91 87.66 0.69 0.78 16 10 O -0.56 -7.03 16.10 16.00 0.26 -6.77 16 11 C 0.03 -0.21 5.22 71.24 0.37 0.16 16 12 O -0.30 -1.05 9.00 -73.58 -0.66 -1.71 16 13 C 0.15 0.18 6.68 22.52 0.15 0.33 16 14 C -0.14 -0.54 6.24 22.40 0.14 -0.40 16 15 Br -0.05 -0.38 33.16 -20.37 -0.68 -1.05 16 16 C -0.06 -0.01 8.40 22.27 0.19 0.18 16 17 C -0.15 0.41 5.39 -19.85 -0.11 0.30 16 18 C -0.05 0.18 2.82 71.24 0.20 0.38 16 19 O -0.55 1.90 12.77 -148.98 -1.90 0.00 16 20 Si 0.74 -1.54 29.78 68.60 2.04 0.50 16 21 C -0.03 0.17 9.60 22.26 0.21 0.38 16 22 C -0.19 1.06 9.04 22.36 0.20 1.27 16 23 C -0.14 0.48 7.47 31.12 0.23 0.71 16 24 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.10 -0.39 8.10 -2.39 -0.02 -0.41 16 28 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.42 -6.13 8.70 -92.71 -0.81 -6.94 16 30 H 0.13 -1.67 7.66 -2.39 -0.02 -1.68 16 31 H 0.13 -1.74 7.66 -2.39 -0.02 -1.76 16 32 H 0.15 -0.24 4.87 -2.91 -0.01 -0.25 16 33 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.40 -4.29 8.70 -74.05 -0.64 -4.93 16 35 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 36 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 37 H 0.16 -1.30 8.06 -2.91 -0.02 -1.32 16 38 H 0.17 -2.27 6.30 -2.91 -0.02 -2.28 16 39 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.10 -0.11 8.10 -2.39 -0.02 -0.13 16 Total: 0.00 -25.32 370.31 -0.77 -26.09 By element: Atomic # 1 Polarization: -24.78 SS G_CDS: -0.32 Total: -25.10 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 4.06 Total: 6.97 kcal Atomic # 7 Polarization: 4.66 SS G_CDS: -2.32 Total: 2.34 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -2.31 Total: -8.48 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.04 Total: 0.50 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.25 Total: -1.27 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.68 Total: -1.05 kcal Total: -25.32 -0.77 -26.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6201210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.655 kcal (2) G-P(sol) polarization free energy of solvation -25.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds