Wall clock time and date at job start Sat Mar 6 2021 19:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81403 * 103.00127 * 2 1 4 4 H 1.08996 * 112.84698 * 43.80610 * 3 2 1 5 5 C 1.53778 * 113.61384 * 174.99917 * 3 2 1 6 6 C 1.53778 * 87.08017 * 140.06288 * 5 3 2 7 7 H 1.09002 * 113.61784 * 219.93335 * 6 5 3 8 8 N 1.46507 * 113.61149 * 89.11832 * 6 5 3 9 9 C 1.34778 * 120.00058 * 155.00559 * 8 6 5 10 10 O 1.21281 * 119.99856 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99800 * 180.02562 * 9 8 6 12 12 N 1.46905 * 109.47019 * 179.97438 * 11 9 8 13 13 C 1.46898 * 110.99928 * 66.04544 * 12 11 9 14 14 C 1.39674 * 110.99805 * 189.99414 * 12 11 9 15 15 C 1.38894 * 120.06915 * 120.00116 * 14 12 11 16 16 C 1.50702 * 120.03816 * 0.02562 * 15 14 12 17 17 O 1.42908 * 109.46645 * 284.99475 * 16 15 14 18 18 Si 1.86298 * 109.46915 * 165.00223 * 16 15 14 19 19 C 1.38123 * 119.92142 * 180.27538 * 15 14 12 20 20 C 1.38270 * 120.07661 * 359.48884 * 19 15 14 21 21 C 1.50698 * 119.92299 * 180.27741 * 20 19 15 22 22 F 1.39904 * 109.46572 * 180.23580 * 21 20 19 23 23 F 1.39901 * 109.47451 * 300.22959 * 21 20 19 24 24 F 1.39892 * 109.47471 * 60.23742 * 21 20 19 25 25 C 1.38306 * 120.14639 * 0.51425 * 20 19 15 26 26 C 1.38082 * 120.07820 * 359.74095 * 25 20 19 27 27 C 1.53777 * 87.08456 * 334.56978 * 6 5 3 28 28 H 1.09000 * 109.47242 * 60.00285 * 1 2 3 29 29 H 1.09001 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47251 * 299.99814 * 1 2 3 31 31 H 1.08997 * 113.61585 * 25.51823 * 5 3 2 32 32 H 1.08999 * 113.61390 * 254.61568 * 5 3 2 33 33 H 0.96998 * 119.99569 * 334.99358 * 8 6 5 34 34 H 1.09000 * 109.47716 * 59.99281 * 11 9 8 35 35 H 1.09001 * 109.46822 * 299.99127 * 11 9 8 36 36 H 1.08997 * 109.47010 * 183.95482 * 13 12 11 37 37 H 1.09003 * 109.46938 * 303.95249 * 13 12 11 38 38 H 1.08999 * 109.47259 * 63.95072 * 13 12 11 39 39 H 1.08996 * 109.47312 * 44.99566 * 16 15 14 40 40 H 0.96699 * 113.99775 * 60.00016 * 17 16 15 41 41 H 1.48506 * 109.99834 * 178.68053 * 18 16 15 42 42 H 1.48502 * 110.00011 * 299.99318 * 18 16 15 43 43 H 1.08006 * 119.96158 * 179.73031 * 19 15 14 44 44 H 1.08003 * 119.95857 * 179.72244 * 25 20 19 45 45 H 1.08000 * 120.04189 * 179.97438 * 26 25 20 46 46 H 1.08994 * 113.62016 * 139.97998 * 27 6 5 47 47 H 1.09005 * 113.61351 * 270.88352 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0519 0.1228 6 6 3.5202 3.1751 -0.9067 7 1 4.3238 3.2505 -1.6393 8 7 3.1758 4.4659 -0.3053 9 6 3.4487 5.6101 -0.9632 10 8 3.9798 5.5712 -2.0529 11 6 3.0950 6.9379 -0.3444 12 7 3.4922 8.0225 -1.2521 13 6 2.6996 7.9910 -2.4885 14 6 3.3885 9.2651 -0.6227 15 6 4.5119 10.0696 -0.4815 16 6 5.8447 9.6032 -1.0080 17 8 6.3754 8.6003 -0.1392 18 14 7.0216 11.0454 -1.0835 19 6 4.4070 11.2953 0.1465 20 6 3.1834 11.7263 0.6250 21 6 3.0718 13.0670 1.3040 22 9 1.7477 13.2785 1.7035 23 9 3.9070 13.0926 2.4260 24 9 3.4566 14.0746 0.4131 25 6 2.0629 10.9277 0.4861 26 6 2.1616 9.6989 -0.1360 27 6 2.3003 2.3836 -1.4068 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.3572 1.2387 -0.2394 32 1 4.0258 2.4119 1.1077 33 1 2.7513 4.4970 0.5663 34 1 3.6201 7.0480 0.6045 35 1 2.0197 6.9834 -0.1720 36 1 3.0609 8.7598 -3.1714 37 1 2.7980 7.0123 -2.9583 38 1 1.6517 8.1773 -2.2532 39 1 5.7153 9.1871 -2.0070 40 1 5.8135 7.8182 -0.0519 41 1 8.3493 10.5925 -1.5710 42 1 6.4812 12.0954 -1.9838 43 1 5.2810 11.9195 0.2604 44 1 1.1095 11.2654 0.8650 45 1 1.2863 9.0755 -0.2437 46 1 1.4450 3.0113 -1.6569 47 1 2.5388 1.6610 -2.1873 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_6406254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:15 Heat of formation + Delta-G solvation = -134.581055 kcal Electronic energy + Delta-G solvation = -34712.597115 eV Core-core repulsion = 29575.094223 eV Total energy + Delta-G solvation = -5137.502892 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.122 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.18897 -48.71595 -48.64748 -41.85381 -41.02971 -39.38631 -37.61646 -37.54754 -34.35768 -33.00974 -32.12310 -29.87714 -29.53679 -27.68436 -26.98843 -26.80070 -26.19755 -24.97512 -23.43145 -22.20495 -21.59304 -20.64037 -19.50992 -19.50691 -19.47971 -18.67486 -18.18871 -17.78200 -17.51297 -17.03647 -16.84526 -16.43541 -16.32692 -16.07900 -15.61185 -15.55495 -15.52081 -15.40978 -15.18523 -15.10341 -15.08639 -14.84391 -14.80674 -14.71427 -14.59978 -14.46196 -14.23627 -14.05896 -14.01464 -13.77388 -13.58668 -13.56258 -13.21995 -12.96278 -12.85938 -12.59685 -12.51478 -12.22619 -11.79495 -11.58925 -11.45775 -11.21257 -10.96046 -10.83883 -10.22978 -10.14726 -10.09360 -9.69121 -8.71174 -4.97898 -0.37128 0.01351 0.75762 1.30058 1.55112 1.55186 1.59967 1.61771 1.85374 1.91422 2.17325 2.60985 2.71616 2.94621 3.33435 3.36890 3.38291 3.49002 3.59421 3.66853 3.73374 3.84239 3.92554 4.01123 4.03071 4.07703 4.17381 4.28146 4.29248 4.30480 4.33420 4.42235 4.47743 4.49306 4.62162 4.68142 4.73113 4.80543 4.85203 4.87306 4.89308 4.95583 4.97970 5.02876 5.12594 5.37788 5.51263 5.55273 6.05825 6.50362 6.57071 7.22607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.309 6.309 3 C -0.068 4.068 4 H 0.122 0.878 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.090 0.910 8 N -0.700 5.700 9 C 0.518 3.482 10 O -0.559 6.559 11 C 0.037 3.963 12 N -0.507 5.507 13 C 0.026 3.974 14 C 0.129 3.871 15 C -0.099 4.099 16 C -0.065 4.065 17 O -0.540 6.540 18 Si 0.786 3.214 19 C -0.061 4.061 20 C -0.184 4.184 21 C 0.509 3.491 22 F -0.177 7.177 23 F -0.177 7.177 24 F -0.182 7.182 25 C -0.055 4.055 26 C -0.138 4.138 27 C -0.134 4.134 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.417 0.583 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.371 0.629 41 H -0.294 1.294 42 H -0.265 1.265 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.076 0.924 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 -1.627 4.155 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.081 6.081 3 C -0.196 4.196 4 H 0.140 0.860 5 C -0.149 4.149 6 C 0.020 3.980 7 H 0.108 0.892 8 N -0.354 5.354 9 C 0.305 3.695 10 O -0.436 6.436 11 C -0.091 4.091 12 N -0.228 5.228 13 C -0.120 4.120 14 C 0.035 3.965 15 C -0.100 4.100 16 C -0.174 4.174 17 O -0.347 6.347 18 Si 0.688 3.312 19 C -0.079 4.079 20 C -0.186 4.186 21 C 0.455 3.545 22 F -0.158 7.158 23 F -0.158 7.158 24 F -0.163 7.163 25 C -0.073 4.073 26 C -0.158 4.158 27 C -0.175 4.175 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.220 0.780 41 H -0.221 1.221 42 H -0.191 1.191 43 H 0.167 0.833 44 H 0.176 0.824 45 H 0.178 0.822 46 H 0.095 0.905 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.838 -1.710 2.823 5.062 hybrid contribution -2.663 -0.029 -0.342 2.685 sum -6.502 -1.739 2.481 7.173 Atomic orbital electron populations 1.23378 0.91893 1.07068 1.05687 1.87218 1.10215 1.12959 1.97729 1.24811 1.01119 0.92559 1.01158 0.86041 1.23128 0.93379 0.97463 1.00942 1.21638 0.97707 0.82295 0.96353 0.89169 1.45508 1.62679 1.04142 1.23027 1.20754 0.77556 0.86098 0.85122 1.90735 1.43029 1.87614 1.22238 1.22201 1.03185 0.87088 0.96669 1.59152 1.57863 1.00070 1.05749 1.22564 0.95101 1.03980 0.90381 1.18846 0.92238 0.90662 0.94714 1.20163 0.95972 0.94117 0.99796 1.25279 0.97493 0.99868 0.94751 1.86697 1.49623 1.30611 1.67728 0.92661 0.74921 0.75562 0.88038 1.20776 0.96710 0.95483 0.94917 1.19977 0.97073 0.94606 1.06928 1.18340 0.73659 0.85715 0.76830 1.93176 1.35817 1.95636 1.91221 1.93239 1.71908 1.96880 1.53784 1.93228 1.91015 1.63759 1.68294 1.21164 0.98051 0.92946 0.95162 1.21871 0.98268 0.96813 0.98822 1.23699 0.99039 0.99019 0.95785 0.89891 0.87926 0.89417 0.88474 0.88262 0.74563 0.85233 0.87997 0.91868 0.90167 0.93144 0.90869 0.78039 1.22139 1.19050 0.83291 0.82403 0.82201 0.90504 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.50 10.76 113.37 1.22 1.72 16 2 S -0.31 -0.02 22.18 -56.49 -1.25 -1.28 16 3 C -0.07 0.39 4.15 31.12 0.13 0.52 16 4 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 5 C -0.11 0.67 7.42 31.12 0.23 0.90 16 6 C 0.13 -0.58 4.32 45.51 0.20 -0.38 16 7 H 0.09 0.06 7.46 -2.39 -0.02 0.05 16 8 N -0.70 5.67 5.26 -440.04 -2.32 3.35 16 9 C 0.52 -1.78 7.52 87.66 0.66 -1.13 16 10 O -0.56 -3.56 13.93 -3.03 -0.04 -3.60 16 11 C 0.04 -0.33 4.91 85.55 0.42 0.09 16 12 N -0.51 1.72 3.19 -724.43 -2.31 -0.59 16 13 C 0.03 -0.06 9.02 127.69 1.15 1.10 16 14 C 0.13 -0.44 4.62 38.22 0.18 -0.27 16 15 C -0.10 0.05 5.28 -19.73 -0.10 -0.06 16 16 C -0.06 -0.15 2.30 71.24 0.16 0.02 16 17 O -0.54 -1.84 12.65 -148.98 -1.89 -3.72 16 18 Si 0.79 1.59 30.18 68.60 2.07 3.66 16 19 C -0.06 0.06 8.20 22.25 0.18 0.24 16 20 C -0.18 0.27 5.37 -19.84 -0.11 0.17 16 21 C 0.51 0.37 3.31 71.24 0.24 0.60 16 22 F -0.18 -0.15 15.97 44.97 0.72 0.57 16 23 F -0.18 -0.36 17.23 44.97 0.77 0.41 16 24 F -0.18 -0.55 17.24 44.97 0.78 0.22 16 25 C -0.05 0.28 9.42 22.25 0.21 0.49 16 26 C -0.14 0.95 8.66 22.40 0.19 1.15 16 27 C -0.13 0.60 7.47 31.12 0.23 0.83 16 28 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 32 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 33 H 0.42 -5.96 8.70 -92.71 -0.81 -6.77 16 34 H 0.13 -1.58 8.06 -2.39 -0.02 -1.59 16 35 H 0.10 -1.42 7.48 -2.39 -0.02 -1.44 16 36 H 0.06 -0.01 8.14 -2.39 -0.02 -0.02 16 37 H 0.08 0.15 5.83 -2.39 -0.01 0.14 16 38 H 0.05 -0.31 7.34 -2.39 -0.02 -0.33 16 39 H 0.07 0.33 7.78 -2.39 -0.02 0.31 16 40 H 0.37 -0.01 8.38 -74.06 -0.62 -0.64 16 41 H -0.29 -2.70 7.11 99.48 0.71 -1.99 16 42 H -0.26 -1.22 7.11 99.48 0.71 -0.51 16 43 H 0.15 -0.47 5.14 -2.91 -0.01 -0.48 16 44 H 0.16 -1.30 7.15 -2.91 -0.02 -1.32 16 45 H 0.16 -1.92 7.14 -2.91 -0.02 -1.94 16 46 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.09 -0.18 8.10 -2.38 -0.02 -0.20 16 Total: 0.00 -17.47 408.43 1.37 -16.10 By element: Atomic # 1 Polarization: -20.75 SS G_CDS: -0.35 Total: -21.10 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.19 Total: 5.98 kcal Atomic # 7 Polarization: 7.39 SS G_CDS: -4.63 Total: 2.76 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -1.93 Total: -7.32 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 2.27 Total: 1.20 kcal Atomic # 14 Polarization: 1.59 SS G_CDS: 2.07 Total: 3.66 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.25 Total: -1.28 kcal Total: -17.47 1.37 -16.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6406254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.485 kcal (2) G-P(sol) polarization free energy of solvation -17.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds