Wall clock time and date at job start Sat Mar 6 2021 19:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00492 * 2 1 4 4 C 1.39451 * 120.12489 * 180.02562 * 3 2 1 5 5 O 1.34768 * 133.24361 * 0.06393 * 4 3 2 6 6 C 1.34931 * 110.84418 * 179.97438 * 5 4 3 7 7 C 1.46985 * 125.14099 * 179.97438 * 6 5 4 8 8 O 1.21662 * 119.99689 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00419 * 0.05010 * 7 6 5 10 10 C 1.46498 * 120.00326 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.85028 * 23.80691 * 10 9 7 12 12 C 1.53787 * 113.61622 * 154.99904 * 10 9 7 13 13 C 1.53777 * 87.08078 * 89.11562 * 12 10 9 14 14 H 1.08998 * 113.61516 * 270.80385 * 13 12 10 15 15 S 1.81404 * 113.61190 * 139.98093 * 13 12 10 16 16 C 1.81403 * 102.99714 * 175.00194 * 15 13 12 17 17 C 1.53777 * 113.61641 * 252.49523 * 10 9 7 18 18 C 1.35818 * 109.71616 * 0.02562 * 6 5 4 19 19 C 1.40610 * 119.13437 * 180.02562 * 4 3 2 20 20 C 1.39776 * 120.12061 * 0.04970 * 19 4 3 21 21 C 1.50707 * 120.09241 * 179.97438 * 20 19 4 22 22 O 1.42903 * 109.46442 * 75.00174 * 21 20 19 23 23 Si 1.86293 * 109.47256 * 194.99740 * 21 20 19 24 24 C 1.36628 * 119.81483 * 0.27587 * 20 19 4 25 25 C 1.38266 * 120.12039 * 0.02836 * 3 2 1 26 26 H 1.09001 * 109.47522 * 59.99031 * 1 2 3 27 27 H 1.08999 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46467 * 299.99435 * 1 2 3 29 29 H 0.97010 * 119.99762 * 359.97438 * 9 7 6 30 30 H 1.08991 * 113.61610 * 203.66934 * 12 10 9 31 31 H 1.09001 * 113.60866 * 334.48489 * 12 10 9 32 32 H 1.08993 * 109.47252 * 60.00354 * 16 15 13 33 33 H 1.09000 * 109.47039 * 180.02562 * 16 15 13 34 34 H 1.09008 * 109.47302 * 299.99762 * 16 15 13 35 35 H 1.08996 * 113.61594 * 25.43504 * 17 10 9 36 36 H 1.09002 * 113.61454 * 156.33395 * 17 10 9 37 37 H 1.07998 * 126.95458 * 180.02562 * 18 6 5 38 38 H 1.08999 * 109.47345 * 315.00244 * 21 20 19 39 39 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 40 40 H 1.48506 * 109.99973 * 180.02562 * 23 21 20 41 41 H 1.48493 * 110.00375 * 301.32185 * 23 21 20 42 42 H 1.08003 * 119.74945 * 179.72339 * 24 20 19 43 43 H 1.08006 * 119.65523 * 359.97379 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4388 1.2873 -0.0005 5 8 4.4141 0.3573 -0.0022 6 6 5.6318 0.9386 -0.0026 7 6 6.9131 0.2184 -0.0037 8 8 7.9596 0.8388 -0.0035 9 7 6.9288 -1.1292 -0.0056 10 6 8.2058 -1.8470 -0.0073 11 1 9.0253 -1.2539 0.3985 12 6 8.1175 -3.2630 0.5864 13 6 7.7801 -3.7516 -0.8321 14 1 6.7134 -3.7395 -1.0558 15 16 8.5734 -5.3240 -1.2669 16 6 7.8719 -5.6977 -2.8975 17 6 8.5344 -2.5165 -1.3521 18 6 5.4945 2.2898 -0.0005 19 6 4.0555 2.5509 0.0000 20 6 3.2766 3.7115 0.0022 21 6 3.9383 5.0656 0.0033 22 8 4.4595 5.3420 -1.2982 23 14 2.6870 6.3678 0.4605 24 6 1.9138 3.6150 0.0094 25 6 1.2958 2.3726 0.0006 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8902 29 1 6.0943 -1.6240 -0.0057 30 1 9.0689 -3.6387 0.9629 31 1 7.3016 -3.3877 1.2983 32 1 8.1215 -4.8963 -3.5928 33 1 8.2840 -6.6381 -3.2635 34 1 6.7883 -5.7837 -2.8159 35 1 8.0543 -2.0392 -2.2063 36 1 9.5998 -2.6882 -1.5056 37 1 6.2874 3.0230 -0.0007 38 1 4.7513 5.0721 0.7293 39 1 3.7902 5.3521 -1.9960 40 1 3.3270 7.7079 0.4647 41 1 1.5577 6.3478 -0.5034 42 1 1.3130 4.5125 0.0156 43 1 0.2175 2.3119 0.0006 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525166_6672420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:22 Heat of formation + Delta-G solvation = -31.100181 kcal Electronic energy + Delta-G solvation = -28169.133156 eV Core-core repulsion = 24082.701561 eV Total energy + Delta-G solvation = -4086.431595 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.70127 -41.30960 -40.64166 -39.23402 -39.12105 -37.11863 -34.48277 -33.59781 -31.94875 -31.00048 -29.93695 -28.79150 -26.91603 -26.88351 -26.27086 -24.70459 -23.99224 -22.16749 -21.71526 -20.75778 -19.89835 -19.06892 -18.63663 -17.86308 -17.81085 -17.68242 -17.09043 -16.96045 -16.67999 -16.26386 -16.14285 -15.92260 -15.75707 -15.53369 -15.27779 -14.71125 -14.67403 -14.57294 -14.50738 -14.18588 -14.09352 -13.76863 -13.66574 -13.49016 -13.48008 -13.35626 -12.66112 -12.59808 -12.38006 -12.16730 -11.94527 -11.70479 -11.67731 -11.46555 -10.97699 -10.89434 -10.63703 -10.32467 -9.80786 -9.02759 -8.66425 -5.01952 -0.62482 0.08743 0.67450 0.70270 1.18580 1.25692 1.50201 1.54344 1.86125 1.90128 2.00220 2.01253 2.37156 3.16658 3.22908 3.26156 3.34233 3.47753 3.57435 3.59711 3.79643 3.80654 3.84037 3.96804 4.05572 4.05917 4.14669 4.16501 4.19257 4.38121 4.41975 4.43724 4.45859 4.58143 4.61760 4.65952 4.74341 4.79059 4.80830 4.86240 4.87820 5.03924 5.19968 5.25792 5.34919 5.59845 6.11186 6.27228 6.36782 6.87731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.150 3.850 4 C 0.047 3.953 5 O -0.174 6.174 6 C -0.025 4.025 7 C 0.606 3.394 8 O -0.505 6.505 9 N -0.702 5.702 10 C 0.122 3.878 11 H 0.117 0.883 12 C -0.115 4.115 13 C -0.087 4.087 14 H 0.104 0.896 15 S -0.249 6.249 16 C -0.123 4.123 17 C -0.138 4.138 18 C -0.101 4.101 19 C -0.082 4.082 20 C -0.094 4.094 21 C -0.074 4.074 22 O -0.525 6.525 23 Si 0.692 3.308 24 C -0.096 4.096 25 C -0.177 4.177 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.408 0.592 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.175 0.825 38 H 0.119 0.881 39 H 0.375 0.625 40 H -0.255 1.255 41 H -0.258 1.258 42 H 0.140 0.860 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -0.861 1.020 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.104 3.896 4 C -0.002 4.002 5 O -0.076 6.076 6 C -0.076 4.076 7 C 0.392 3.608 8 O -0.381 6.381 9 N -0.353 5.353 10 C 0.015 3.985 11 H 0.135 0.865 12 C -0.154 4.154 13 C -0.216 4.216 14 H 0.123 0.877 15 S -0.021 6.021 16 C -0.291 4.291 17 C -0.179 4.179 18 C -0.122 4.122 19 C -0.083 4.083 20 C -0.095 4.095 21 C -0.183 4.183 22 O -0.331 6.331 23 Si 0.593 3.407 24 C -0.114 4.114 25 C -0.196 4.196 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.244 0.756 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.193 0.807 38 H 0.137 0.863 39 H 0.223 0.777 40 H -0.180 1.180 41 H -0.183 1.183 42 H 0.158 0.842 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.898 -0.813 1.663 5.236 hybrid contribution -1.617 0.188 -2.029 2.601 sum -6.514 -0.625 -0.366 6.555 Atomic orbital electron populations 1.23195 0.77277 1.04776 1.01816 1.86169 1.22190 1.25699 1.88365 1.17747 0.86496 0.85890 0.99425 1.18774 0.87432 0.86962 1.07015 1.84045 1.12658 1.34745 1.76165 1.21915 0.83821 0.92587 1.09239 1.16586 0.85491 0.81972 0.76762 1.90934 1.30296 1.67350 1.49502 1.45574 1.09701 1.05655 1.74327 1.21899 0.86682 0.92554 0.97355 0.86509 1.23175 1.04344 0.93446 0.94462 1.24814 1.01926 0.94014 1.00822 0.87744 1.86937 1.61566 1.29387 1.24197 1.23381 1.03779 1.05699 0.96259 1.23788 1.02122 0.94174 0.97786 1.22762 0.94800 0.94293 1.00307 1.19404 0.92606 0.92053 1.04234 1.19409 0.92815 0.94339 1.02941 1.25036 1.06887 0.97913 0.88501 1.86642 1.37573 1.92620 1.16284 0.94888 0.77522 0.77902 0.90389 1.20589 0.93488 0.97810 0.99467 1.20975 1.00379 0.90530 1.07724 0.92150 0.87630 0.91986 0.75587 0.87289 0.89523 0.90368 0.88001 0.90494 0.90434 0.87349 0.80740 0.86317 0.77710 1.17955 1.18323 0.84217 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.33 10.50 -19.62 -0.21 -0.54 16 3 C 0.15 0.20 6.70 -39.12 -0.26 -0.06 16 4 C 0.05 0.13 7.35 -38.24 -0.28 -0.15 16 5 O -0.17 -0.50 10.28 2.67 0.03 -0.47 16 6 C -0.03 -0.07 7.07 -36.91 -0.26 -0.33 16 7 C 0.61 1.66 7.80 -12.72 -0.10 1.56 16 8 O -0.50 -2.81 16.43 5.22 0.09 -2.73 16 9 N -0.70 -0.04 5.26 -54.23 -0.29 -0.33 16 10 C 0.12 -0.06 4.32 -67.12 -0.29 -0.35 16 11 H 0.12 0.05 7.46 -51.93 -0.39 -0.33 16 12 C -0.11 0.18 7.42 -25.92 -0.19 -0.01 16 13 C -0.09 0.09 4.15 -25.92 -0.11 -0.02 16 14 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 15 S -0.25 -0.22 22.17 -107.50 -2.38 -2.60 16 16 C -0.12 0.12 10.76 101.05 1.09 1.20 16 17 C -0.14 0.10 7.47 -25.92 -0.19 -0.09 16 18 C -0.10 -0.26 10.68 -37.23 -0.40 -0.66 16 19 C -0.08 -0.18 6.16 -105.21 -0.65 -0.83 16 20 C -0.09 -0.04 5.27 -104.63 -0.55 -0.59 16 21 C -0.07 0.02 2.71 36.01 0.10 0.12 16 22 O -0.53 -0.65 12.88 -35.23 -0.45 -1.10 16 23 Si 0.69 -1.14 30.24 -169.99 -5.14 -6.28 16 24 C -0.10 0.10 8.62 -39.97 -0.34 -0.25 16 25 C -0.18 0.17 9.03 -39.38 -0.36 -0.19 16 26 H 0.06 -0.25 7.66 -51.93 -0.40 -0.64 16 27 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.06 -0.26 7.66 -51.92 -0.40 -0.66 16 29 H 0.41 -0.58 8.42 -40.82 -0.34 -0.93 16 30 H 0.11 -0.17 8.10 -51.93 -0.42 -0.59 16 31 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 32 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.10 -0.14 8.14 -51.92 -0.42 -0.57 16 34 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 35 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.11 -0.08 8.10 -51.93 -0.42 -0.50 16 37 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 39 H 0.38 -0.65 8.70 45.56 0.40 -0.25 16 40 H -0.25 -0.46 7.11 56.52 0.40 -0.06 16 41 H -0.26 0.12 6.70 56.52 0.38 0.50 16 42 H 0.14 -0.41 4.81 -52.48 -0.25 -0.66 16 43 H 0.15 -0.54 6.26 -52.48 -0.33 -0.87 16 LS Contribution 377.04 15.07 5.68 5.68 Total: 0.00 -7.77 377.04 -10.05 -17.81 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: -5.57 Total: -9.70 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.81 Total: 0.26 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -0.29 Total: -0.33 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.55 Total: -4.85 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -5.14 Total: -6.28 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.38 Total: -2.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -7.77 -10.05 -17.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6672420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.285 kcal (2) G-P(sol) polarization free energy of solvation -7.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds