Wall clock time and date at job start Sat Mar 6 2021 19:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00492 * 2 1 4 4 C 1.39451 * 120.12489 * 180.02562 * 3 2 1 5 5 O 1.34768 * 133.24361 * 0.06393 * 4 3 2 6 6 C 1.34931 * 110.84418 * 179.97438 * 5 4 3 7 7 C 1.46985 * 125.14099 * 179.97438 * 6 5 4 8 8 O 1.21662 * 119.99689 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00419 * 0.05010 * 7 6 5 10 10 C 1.46498 * 120.00326 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.85028 * 23.80691 * 10 9 7 12 12 C 1.53787 * 113.61622 * 154.99904 * 10 9 7 13 13 C 1.53777 * 87.08078 * 89.11562 * 12 10 9 14 14 H 1.08998 * 113.61516 * 270.80385 * 13 12 10 15 15 S 1.81404 * 113.61190 * 139.98093 * 13 12 10 16 16 C 1.81403 * 102.99714 * 175.00194 * 15 13 12 17 17 C 1.53777 * 113.61641 * 252.49523 * 10 9 7 18 18 C 1.35818 * 109.71616 * 0.02562 * 6 5 4 19 19 C 1.40610 * 119.13437 * 180.02562 * 4 3 2 20 20 C 1.39776 * 120.12061 * 0.04970 * 19 4 3 21 21 C 1.50707 * 120.09241 * 179.97438 * 20 19 4 22 22 O 1.42903 * 109.46442 * 75.00174 * 21 20 19 23 23 Si 1.86293 * 109.47256 * 194.99740 * 21 20 19 24 24 C 1.36628 * 119.81483 * 0.27587 * 20 19 4 25 25 C 1.38266 * 120.12039 * 0.02836 * 3 2 1 26 26 H 1.09001 * 109.47522 * 59.99031 * 1 2 3 27 27 H 1.08999 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46467 * 299.99435 * 1 2 3 29 29 H 0.97010 * 119.99762 * 359.97438 * 9 7 6 30 30 H 1.08991 * 113.61610 * 203.66934 * 12 10 9 31 31 H 1.09001 * 113.60866 * 334.48489 * 12 10 9 32 32 H 1.08993 * 109.47252 * 60.00354 * 16 15 13 33 33 H 1.09000 * 109.47039 * 180.02562 * 16 15 13 34 34 H 1.09008 * 109.47302 * 299.99762 * 16 15 13 35 35 H 1.08996 * 113.61594 * 25.43504 * 17 10 9 36 36 H 1.09002 * 113.61454 * 156.33395 * 17 10 9 37 37 H 1.07998 * 126.95458 * 180.02562 * 18 6 5 38 38 H 1.08999 * 109.47345 * 315.00244 * 21 20 19 39 39 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 40 40 H 1.48506 * 109.99973 * 180.02562 * 23 21 20 41 41 H 1.48493 * 110.00375 * 301.32185 * 23 21 20 42 42 H 1.08003 * 119.74945 * 179.72339 * 24 20 19 43 43 H 1.08006 * 119.65523 * 359.97379 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4388 1.2873 -0.0005 5 8 4.4141 0.3573 -0.0022 6 6 5.6318 0.9386 -0.0026 7 6 6.9131 0.2184 -0.0037 8 8 7.9596 0.8388 -0.0035 9 7 6.9288 -1.1292 -0.0056 10 6 8.2058 -1.8470 -0.0073 11 1 9.0253 -1.2539 0.3985 12 6 8.1175 -3.2630 0.5864 13 6 7.7801 -3.7516 -0.8321 14 1 6.7134 -3.7395 -1.0558 15 16 8.5734 -5.3240 -1.2669 16 6 7.8719 -5.6977 -2.8975 17 6 8.5344 -2.5165 -1.3521 18 6 5.4945 2.2898 -0.0005 19 6 4.0555 2.5509 0.0000 20 6 3.2766 3.7115 0.0022 21 6 3.9383 5.0656 0.0033 22 8 4.4595 5.3420 -1.2982 23 14 2.6870 6.3678 0.4605 24 6 1.9138 3.6150 0.0094 25 6 1.2958 2.3726 0.0006 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8902 29 1 6.0943 -1.6240 -0.0057 30 1 9.0689 -3.6387 0.9629 31 1 7.3016 -3.3877 1.2983 32 1 8.1215 -4.8963 -3.5928 33 1 8.2840 -6.6381 -3.2635 34 1 6.7883 -5.7837 -2.8159 35 1 8.0543 -2.0392 -2.2063 36 1 9.5998 -2.6882 -1.5056 37 1 6.2874 3.0230 -0.0007 38 1 4.7513 5.0721 0.7293 39 1 3.7902 5.3521 -1.9960 40 1 3.3270 7.7079 0.4647 41 1 1.5577 6.3478 -0.5034 42 1 1.3130 4.5125 0.0156 43 1 0.2175 2.3119 0.0006 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_6672420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:21 Heat of formation + Delta-G solvation = -29.625210 kcal Electronic energy + Delta-G solvation = -28169.069197 eV Core-core repulsion = 24082.701561 eV Total energy + Delta-G solvation = -4086.367635 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.107 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.80033 -41.40996 -40.61739 -39.32873 -39.14027 -37.13271 -34.61290 -33.69518 -31.95379 -31.04033 -29.86566 -28.62831 -26.90120 -26.85361 -26.23918 -24.76475 -24.04058 -22.21006 -21.82132 -20.79761 -19.95564 -19.11279 -18.60092 -17.91789 -17.85968 -17.76613 -17.09420 -16.99988 -16.62292 -16.24873 -16.19556 -15.93423 -15.85106 -15.52948 -15.30909 -14.72453 -14.60050 -14.56896 -14.51311 -14.23584 -14.07938 -13.77994 -13.60629 -13.51375 -13.44136 -13.27826 -12.62087 -12.48928 -12.27735 -12.14376 -11.92836 -11.70664 -11.67545 -11.65856 -11.05790 -10.89860 -10.62062 -10.42622 -9.87136 -9.03973 -8.72754 -4.89270 -0.71781 0.06921 0.56796 0.72268 1.11747 1.29674 1.56926 1.59121 1.78960 1.81416 1.97905 2.11140 2.36536 3.11234 3.25622 3.30070 3.36734 3.52799 3.61490 3.63380 3.78070 3.84046 3.86613 3.94543 4.14153 4.26698 4.28910 4.31063 4.39862 4.40712 4.41959 4.48196 4.63291 4.64112 4.66595 4.75345 4.80595 4.82289 4.84122 4.85265 4.88645 5.02115 5.18554 5.25291 5.35429 5.54762 6.11543 6.24784 6.49139 6.73261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.022 3.978 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.607 3.393 8 O -0.541 6.541 9 N -0.687 5.687 10 C 0.119 3.881 11 H 0.106 0.894 12 C -0.106 4.106 13 C -0.075 4.075 14 H 0.113 0.887 15 S -0.294 6.294 16 C -0.115 4.115 17 C -0.133 4.133 18 C -0.110 4.110 19 C -0.096 4.096 20 C -0.099 4.099 21 C -0.090 4.090 22 O -0.548 6.548 23 Si 0.782 3.218 24 C -0.088 4.088 25 C -0.165 4.165 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.417 0.583 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.172 0.828 38 H 0.115 0.885 39 H 0.386 0.614 40 H -0.305 1.305 41 H -0.262 1.262 42 H 0.166 0.834 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -0.827 1.069 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.026 4.026 5 O -0.083 6.083 6 C -0.084 4.084 7 C 0.393 3.607 8 O -0.420 6.420 9 N -0.338 5.338 10 C 0.013 3.987 11 H 0.124 0.876 12 C -0.145 4.145 13 C -0.203 4.203 14 H 0.131 0.869 15 S -0.066 6.066 16 C -0.283 4.283 17 C -0.174 4.174 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.197 4.197 22 O -0.356 6.356 23 Si 0.685 3.315 24 C -0.106 4.106 25 C -0.183 4.183 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.254 0.746 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.190 0.810 38 H 0.133 0.867 39 H 0.236 0.764 40 H -0.234 1.234 41 H -0.188 1.188 42 H 0.183 0.817 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.317 -0.843 1.706 7.560 hybrid contribution -0.911 0.195 -2.070 2.270 sum -8.228 -0.649 -0.364 8.262 Atomic orbital electron populations 1.23489 0.75301 1.06020 1.03181 1.86141 1.24321 1.25833 1.88438 1.17981 0.86098 0.86845 0.99953 1.19201 0.88216 0.87099 1.08070 1.84006 1.12680 1.35046 1.76547 1.21865 0.83938 0.92689 1.09937 1.16624 0.85069 0.82567 0.76410 1.90906 1.31369 1.68154 1.51527 1.45503 1.10424 1.04878 1.72962 1.21921 0.86092 0.92834 0.97889 0.87551 1.23142 1.04843 0.92073 0.94420 1.24805 1.02041 0.92536 1.00951 0.86865 1.87075 1.62664 1.30819 1.26063 1.23401 1.04096 1.06052 0.94766 1.23745 1.02162 0.94170 0.97359 1.22867 0.95427 0.94399 1.00340 1.19570 0.92307 0.92802 1.05050 1.19555 0.93468 0.93877 1.03105 1.25388 1.07762 0.98616 0.87958 1.86609 1.38946 1.92759 1.17279 0.93882 0.75398 0.73456 0.88717 1.20885 0.92925 0.98830 0.97955 1.21379 1.01823 0.89588 1.05551 0.90830 0.86654 0.90439 0.74567 0.87119 0.88507 0.89932 0.87563 0.89709 0.90828 0.87409 0.81013 0.86675 0.76444 1.23380 1.18804 0.81740 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.58 10.50 -93.11 -0.98 -1.56 16 3 C 0.14 0.31 6.70 22.57 0.15 0.46 16 4 C 0.02 0.14 7.35 23.14 0.17 0.31 16 5 O -0.18 -1.33 10.28 -13.37 -0.14 -1.47 16 6 C -0.03 -0.26 7.07 24.00 0.17 -0.09 16 7 C 0.61 4.55 7.80 86.54 0.67 5.22 16 8 O -0.54 -7.37 16.43 -4.23 -0.07 -7.44 16 9 N -0.69 -0.90 5.26 -443.72 -2.33 -3.24 16 10 C 0.12 0.00 4.32 45.52 0.20 0.19 16 11 H 0.11 0.28 7.46 -2.39 -0.02 0.26 16 12 C -0.11 0.30 7.42 31.12 0.23 0.53 16 13 C -0.07 0.13 4.15 31.12 0.13 0.26 16 14 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 15 S -0.29 -0.63 22.17 -56.49 -1.25 -1.88 16 16 C -0.11 0.23 10.76 113.37 1.22 1.45 16 17 C -0.13 0.10 7.47 31.12 0.23 0.33 16 18 C -0.11 -0.82 10.68 23.79 0.25 -0.56 16 19 C -0.10 -0.54 6.16 -20.25 -0.12 -0.66 16 20 C -0.10 -0.07 5.27 -19.87 -0.10 -0.17 16 21 C -0.09 0.02 2.71 71.24 0.19 0.22 16 22 O -0.55 -1.76 12.88 -148.98 -1.92 -3.68 16 23 Si 0.78 -3.29 30.24 68.60 2.07 -1.22 16 24 C -0.09 0.34 8.62 22.02 0.19 0.53 16 25 C -0.16 0.62 9.03 22.40 0.20 0.82 16 26 H 0.07 -0.76 7.66 -2.39 -0.02 -0.78 16 27 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 28 H 0.08 -0.83 7.66 -2.38 -0.02 -0.85 16 29 H 0.42 -0.88 8.42 -92.70 -0.78 -1.66 16 30 H 0.11 -0.30 8.10 -2.39 -0.02 -0.32 16 31 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.11 -0.04 8.10 -2.39 -0.02 -0.06 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.12 -0.02 7.96 -2.39 -0.02 -0.04 16 39 H 0.39 -1.24 8.70 -74.06 -0.64 -1.89 16 40 H -0.31 -1.34 7.11 99.48 0.71 -0.63 16 41 H -0.26 0.90 6.70 99.48 0.67 1.56 16 42 H 0.17 -1.48 4.81 -2.91 -0.01 -1.49 16 43 H 0.18 -1.92 6.26 -2.91 -0.02 -1.93 16 Total: 0.00 -20.13 377.04 -0.07 -20.20 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: -0.35 Total: -9.57 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.90 Total: 9.85 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -2.33 Total: -3.24 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -3.10 Total: -14.15 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.07 Total: -1.22 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.25 Total: -1.88 kcal Total: -20.13 -0.07 -20.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6672420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.421 kcal (2) G-P(sol) polarization free energy of solvation -20.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds