Wall clock time and date at job start Sat Mar 6 2021 19:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81407 * 102.99922 * 2 1 4 4 H 1.09003 * 112.90709 * 43.74917 * 3 2 1 5 5 C 1.53779 * 113.61316 * 175.00334 * 3 2 1 6 6 C 1.53782 * 87.08038 * 139.98145 * 5 3 2 7 7 H 1.09002 * 113.61052 * 219.93461 * 6 5 3 8 8 N 1.46498 * 113.61542 * 89.11161 * 6 5 3 9 9 C 1.34777 * 119.99828 * 154.72141 * 8 6 5 10 10 O 1.21703 * 120.00020 * 0.28039 * 9 8 6 11 11 C 1.46579 * 120.00170 * 180.27960 * 9 8 6 12 12 C 1.36650 * 125.46198 * 180.02562 * 11 9 8 13 13 C 1.37474 * 113.29813 * 180.02562 * 12 11 9 14 14 C 1.50697 * 122.44669 * 179.97438 * 13 12 11 15 15 C 1.33808 * 115.10018 * 359.97438 * 13 12 11 16 16 C 1.50701 * 124.52187 * 180.02562 * 15 13 12 17 17 O 1.42906 * 109.47157 * 30.00344 * 16 15 13 18 18 Si 1.86301 * 109.47439 * 150.00125 * 16 15 13 19 19 S 1.70614 * 110.95693 * 359.72652 * 15 13 12 20 20 C 1.53778 * 87.08166 * 334.56503 * 6 5 3 21 21 H 1.09000 * 109.47239 * 60.00276 * 1 2 3 22 22 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47071 * 299.99956 * 1 2 3 24 24 H 1.08999 * 113.61533 * 25.42852 * 5 3 2 25 25 H 1.09004 * 113.68580 * 254.54026 * 5 3 2 26 26 H 0.97001 * 120.00384 * 335.00588 * 8 6 5 27 27 H 1.08000 * 123.34906 * 359.97438 * 12 11 9 28 28 H 1.09003 * 109.47524 * 90.02304 * 14 13 12 29 29 H 1.09001 * 109.47287 * 210.02313 * 14 13 12 30 30 H 1.09001 * 109.47377 * 330.02191 * 14 13 12 31 31 H 1.08997 * 109.47064 * 270.00238 * 16 15 13 32 32 H 0.96692 * 114.00169 * 180.02562 * 17 16 15 33 33 H 1.48501 * 109.99899 * 300.00294 * 18 16 15 34 34 H 1.48504 * 109.99955 * 61.31789 * 18 16 15 35 35 H 1.08998 * 113.61637 * 139.97959 * 20 6 5 36 36 H 1.08999 * 113.61924 * 270.88614 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6108 2.3441 0.6943 5 6 3.7284 2.0520 0.1227 6 6 3.5206 3.1739 -0.9084 7 1 4.3244 3.2480 -1.6409 8 7 3.1761 4.4655 -0.3090 9 6 3.4544 5.6089 -0.9660 10 8 3.9873 5.5682 -2.0594 11 6 3.1153 6.9014 -0.3636 12 6 3.3456 8.1242 -0.9286 13 6 2.9275 9.1730 -0.1442 14 6 3.0820 10.6110 -0.5676 15 6 2.3735 8.8236 1.0226 16 6 1.8433 9.7984 2.0422 17 8 1.3739 10.9738 1.3784 18 14 0.4389 9.0129 2.9810 19 16 2.3400 7.1268 1.1984 20 6 2.3008 2.3816 -1.4077 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.3572 1.2382 -0.2382 25 1 4.0270 2.4133 1.1068 26 1 2.7514 4.4979 0.5625 27 1 3.8105 8.2537 -1.8948 28 1 2.1951 10.9251 -1.1180 29 1 3.2030 11.2387 0.3152 30 1 3.9597 10.7094 -1.2064 31 1 2.6394 10.0668 2.7366 32 1 1.0181 11.6466 1.9747 33 1 -0.6531 8.6424 2.0453 34 1 0.9212 7.8072 3.7015 35 1 1.4456 3.0090 -1.6588 36 1 2.5393 1.6579 -2.1871 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525166_6739946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:24 Heat of formation + Delta-G solvation = -5.618856 kcal Electronic energy + Delta-G solvation = -19631.094679 eV Core-core repulsion = 16528.736948 eV Total energy + Delta-G solvation = -3102.357730 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.064 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33967 -40.03946 -39.04558 -37.45080 -34.44365 -32.23361 -30.24966 -29.96516 -27.39043 -26.92199 -25.68879 -24.29432 -22.03807 -20.85039 -20.02736 -19.33492 -18.50696 -17.79003 -17.37395 -16.89290 -16.33082 -16.28908 -16.01413 -15.46911 -15.38024 -14.95137 -14.68816 -14.58078 -14.46094 -14.36369 -14.18175 -13.77021 -13.68525 -13.23182 -13.09500 -12.92254 -12.59275 -12.57218 -12.23861 -12.00282 -11.95014 -11.68501 -11.16651 -10.91677 -10.75202 -10.28258 -9.73411 -9.45312 -8.68935 -5.34537 -0.67942 0.22594 0.60968 0.67350 0.97800 1.31122 1.41906 1.51446 1.77126 1.88417 2.10746 3.12349 3.21287 3.23864 3.54738 3.58615 3.68312 3.77097 4.07909 4.13601 4.16576 4.21074 4.35566 4.36690 4.55726 4.56363 4.60409 4.65465 4.71649 4.77718 4.82611 4.89375 4.90657 5.02365 5.36796 5.37937 5.47112 6.24905 6.40771 7.01557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.248 6.248 3 C -0.087 4.087 4 H 0.102 0.898 5 C -0.116 4.116 6 C 0.124 3.876 7 H 0.116 0.884 8 N -0.712 5.712 9 C 0.598 3.402 10 O -0.519 6.519 11 C -0.263 4.263 12 C -0.042 4.042 13 C -0.084 4.084 14 C -0.086 4.086 15 C -0.195 4.195 16 C -0.033 4.033 17 O -0.536 6.536 18 Si 0.670 3.330 19 S 0.179 5.821 20 C -0.138 4.138 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.398 0.602 27 H 0.159 0.841 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.384 0.616 33 H -0.241 1.241 34 H -0.239 1.239 35 H 0.076 0.924 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 3.283 5.636 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.020 6.020 3 C -0.216 4.216 4 H 0.121 0.879 5 C -0.155 4.155 6 C 0.017 3.983 7 H 0.134 0.866 8 N -0.363 5.363 9 C 0.384 3.616 10 O -0.396 6.396 11 C -0.383 4.383 12 C -0.076 4.076 13 C -0.096 4.096 14 C -0.144 4.144 15 C -0.314 4.314 16 C -0.145 4.145 17 O -0.343 6.343 18 Si 0.569 3.431 19 S 0.446 5.554 20 C -0.179 4.179 21 H 0.096 0.904 22 H 0.120 0.880 23 H 0.095 0.905 24 H 0.127 0.873 25 H 0.103 0.897 26 H 0.232 0.768 27 H 0.176 0.824 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.233 0.767 33 H -0.165 1.165 34 H -0.163 1.163 35 H 0.095 0.905 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.462 0.269 5.583 6.108 hybrid contribution -0.287 1.956 -0.779 2.124 sum -2.749 2.224 4.804 5.966 Atomic orbital electron populations 1.23383 0.94079 1.06693 1.04977 1.86942 1.07610 1.09805 1.97623 1.24809 1.00813 0.94724 1.01256 0.87935 1.23186 0.93687 0.98109 1.00530 1.21842 0.98611 0.81269 0.96532 0.86592 1.45539 1.63236 1.05179 1.22392 1.16893 0.77956 0.82175 0.84568 1.90866 1.42277 1.86804 1.19674 1.24555 1.15008 0.97625 1.01063 1.20786 0.96980 0.89358 1.00439 1.18745 0.99504 0.98241 0.93128 1.20531 1.01824 0.89864 1.02217 1.23226 1.08175 0.98348 1.01625 1.23969 1.05230 0.89406 0.95929 1.86572 1.83062 1.27816 1.36851 0.94996 0.80216 0.84335 0.83576 1.82960 1.56630 0.99027 1.16769 1.23789 0.99125 0.99279 0.95720 0.90369 0.87958 0.90522 0.87287 0.89663 0.76775 0.82387 0.90730 0.90048 0.92085 0.89695 0.76728 1.16495 1.16300 0.90512 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 10.76 101.05 1.09 1.20 16 2 S -0.25 -0.25 22.17 -107.50 -2.38 -2.63 16 3 C -0.09 0.06 4.15 -25.92 -0.11 -0.05 16 4 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.12 0.14 7.42 -25.92 -0.19 -0.06 16 6 C 0.12 0.02 4.33 -67.12 -0.29 -0.27 16 7 H 0.12 0.16 7.46 -51.93 -0.39 -0.23 16 8 N -0.71 -0.46 5.26 -54.36 -0.29 -0.75 16 9 C 0.60 2.10 7.78 -12.90 -0.10 2.00 16 10 O -0.52 -3.56 16.44 5.19 0.09 -3.47 16 11 C -0.26 -0.70 6.45 -36.79 -0.24 -0.94 16 12 C -0.04 -0.12 9.80 -40.43 -0.40 -0.51 16 13 C -0.08 -0.17 5.75 -106.46 -0.61 -0.78 16 14 C -0.09 -0.05 8.70 36.00 0.31 0.26 16 15 C -0.20 -0.26 5.57 -35.86 -0.20 -0.46 16 16 C -0.03 0.05 2.75 36.01 0.10 0.15 16 17 O -0.54 1.01 9.81 -35.23 -0.35 0.66 16 18 Si 0.67 -1.44 31.30 -169.99 -5.32 -6.76 16 19 S 0.18 0.16 19.78 -107.50 -2.13 -1.97 16 20 C -0.14 0.04 7.47 -25.92 -0.19 -0.16 16 21 H 0.08 -0.10 8.14 -51.92 -0.42 -0.52 16 22 H 0.10 -0.14 8.14 -51.92 -0.42 -0.56 16 23 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 24 H 0.11 -0.13 8.10 -51.93 -0.42 -0.55 16 25 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 26 H 0.40 -0.49 7.81 -40.82 -0.32 -0.81 16 27 H 0.16 0.36 8.06 -52.49 -0.42 -0.07 16 28 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.01 6.42 -51.93 -0.33 -0.32 16 30 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 31 H 0.09 -0.26 7.96 -51.93 -0.41 -0.68 16 32 H 0.38 -2.59 8.74 45.56 0.40 -2.19 16 33 H -0.24 -0.35 7.11 56.52 0.40 0.05 16 34 H -0.24 0.10 7.11 56.52 0.40 0.50 16 35 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 36 H 0.11 -0.02 8.10 -51.93 -0.42 -0.44 16 LS Contribution 327.68 15.07 4.94 4.94 Total: 0.00 -7.13 327.68 -11.17 -18.30 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -4.90 Total: -8.69 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.83 Total: 0.38 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -0.29 Total: -0.75 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -0.26 Total: -2.81 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.32 Total: -6.76 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -4.51 Total: -4.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -7.13 -11.17 -18.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6739946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.681 kcal (2) G-P(sol) polarization free energy of solvation -7.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds