Wall clock time and date at job start Sat Mar 6 2021 19:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81407 * 102.99922 * 2 1 4 4 H 1.09003 * 112.90709 * 43.74917 * 3 2 1 5 5 C 1.53779 * 113.61316 * 175.00334 * 3 2 1 6 6 C 1.53782 * 87.08038 * 139.98145 * 5 3 2 7 7 H 1.09002 * 113.61052 * 219.93461 * 6 5 3 8 8 N 1.46498 * 113.61542 * 89.11161 * 6 5 3 9 9 C 1.34777 * 119.99828 * 154.72141 * 8 6 5 10 10 O 1.21703 * 120.00020 * 0.28039 * 9 8 6 11 11 C 1.46579 * 120.00170 * 180.27960 * 9 8 6 12 12 C 1.36650 * 125.46198 * 180.02562 * 11 9 8 13 13 C 1.37474 * 113.29813 * 180.02562 * 12 11 9 14 14 C 1.50697 * 122.44669 * 179.97438 * 13 12 11 15 15 C 1.33808 * 115.10018 * 359.97438 * 13 12 11 16 16 C 1.50701 * 124.52187 * 180.02562 * 15 13 12 17 17 O 1.42906 * 109.47157 * 30.00344 * 16 15 13 18 18 Si 1.86301 * 109.47439 * 150.00125 * 16 15 13 19 19 S 1.70614 * 110.95693 * 359.72652 * 15 13 12 20 20 C 1.53778 * 87.08166 * 334.56503 * 6 5 3 21 21 H 1.09000 * 109.47239 * 60.00276 * 1 2 3 22 22 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47071 * 299.99956 * 1 2 3 24 24 H 1.08999 * 113.61533 * 25.42852 * 5 3 2 25 25 H 1.09004 * 113.68580 * 254.54026 * 5 3 2 26 26 H 0.97001 * 120.00384 * 335.00588 * 8 6 5 27 27 H 1.08000 * 123.34906 * 359.97438 * 12 11 9 28 28 H 1.09003 * 109.47524 * 90.02304 * 14 13 12 29 29 H 1.09001 * 109.47287 * 210.02313 * 14 13 12 30 30 H 1.09001 * 109.47377 * 330.02191 * 14 13 12 31 31 H 1.08997 * 109.47064 * 270.00238 * 16 15 13 32 32 H 0.96692 * 114.00169 * 180.02562 * 17 16 15 33 33 H 1.48501 * 109.99899 * 300.00294 * 18 16 15 34 34 H 1.48504 * 109.99955 * 61.31789 * 18 16 15 35 35 H 1.08998 * 113.61637 * 139.97959 * 20 6 5 36 36 H 1.08999 * 113.61924 * 270.88614 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6108 2.3441 0.6943 5 6 3.7284 2.0520 0.1227 6 6 3.5206 3.1739 -0.9084 7 1 4.3244 3.2480 -1.6409 8 7 3.1761 4.4655 -0.3090 9 6 3.4544 5.6089 -0.9660 10 8 3.9873 5.5682 -2.0594 11 6 3.1153 6.9014 -0.3636 12 6 3.3456 8.1242 -0.9286 13 6 2.9275 9.1730 -0.1442 14 6 3.0820 10.6110 -0.5676 15 6 2.3735 8.8236 1.0226 16 6 1.8433 9.7984 2.0422 17 8 1.3739 10.9738 1.3784 18 14 0.4389 9.0129 2.9810 19 16 2.3400 7.1268 1.1984 20 6 2.3008 2.3816 -1.4077 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.3572 1.2382 -0.2382 25 1 4.0270 2.4133 1.1068 26 1 2.7514 4.4979 0.5625 27 1 3.8105 8.2537 -1.8948 28 1 2.1951 10.9251 -1.1180 29 1 3.2030 11.2387 0.3152 30 1 3.9597 10.7094 -1.2064 31 1 2.6394 10.0668 2.7366 32 1 1.0181 11.6466 1.9747 33 1 -0.6531 8.6424 2.0453 34 1 0.9212 7.8072 3.7015 35 1 1.4456 3.0090 -1.6588 36 1 2.5393 1.6579 -2.1871 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_6739946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:24 Heat of formation + Delta-G solvation = -2.582415 kcal Electronic energy + Delta-G solvation = -19630.963009 eV Core-core repulsion = 16528.736948 eV Total energy + Delta-G solvation = -3102.226060 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.064 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49763 -40.08363 -39.16491 -37.35710 -34.63534 -32.29973 -30.25223 -29.89269 -27.46371 -26.90346 -25.70279 -24.34418 -22.18862 -20.93088 -20.06611 -19.44163 -18.39575 -17.84816 -17.40426 -16.97066 -16.44919 -16.36488 -16.08280 -15.49813 -15.40741 -15.00292 -14.71744 -14.55967 -14.46973 -14.40226 -14.11555 -13.81006 -13.64920 -13.32019 -13.10698 -12.93230 -12.62267 -12.58032 -12.28970 -12.00668 -11.94470 -11.70290 -11.44940 -10.93036 -10.68761 -10.41121 -9.79012 -9.51156 -8.75703 -5.19078 -0.82024 0.13954 0.49944 0.68697 1.00034 1.27777 1.53446 1.53766 1.76573 1.88603 1.89614 3.21477 3.25528 3.27376 3.49394 3.61364 3.70832 3.81438 4.01746 4.23730 4.24274 4.26509 4.35591 4.40184 4.51867 4.57931 4.59519 4.63986 4.74571 4.78218 4.82198 4.86102 4.87818 4.92583 5.29952 5.30883 5.42718 6.12801 6.82596 6.87245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.293 6.293 3 C -0.074 4.074 4 H 0.114 0.886 5 C -0.106 4.106 6 C 0.120 3.880 7 H 0.101 0.899 8 N -0.699 5.699 9 C 0.596 3.404 10 O -0.562 6.562 11 C -0.283 4.283 12 C -0.052 4.052 13 C -0.101 4.101 14 C -0.081 4.081 15 C -0.203 4.203 16 C -0.040 4.040 17 O -0.550 6.550 18 Si 0.753 3.247 19 S 0.205 5.795 20 C -0.134 4.134 21 H 0.081 0.919 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.408 0.592 27 H 0.153 0.847 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.406 0.594 33 H -0.294 1.294 34 H -0.258 1.258 35 H 0.072 0.928 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 3.942 7.367 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.064 6.064 3 C -0.203 4.203 4 H 0.132 0.868 5 C -0.145 4.145 6 C 0.013 3.987 7 H 0.119 0.881 8 N -0.350 5.350 9 C 0.383 3.617 10 O -0.443 6.443 11 C -0.403 4.403 12 C -0.086 4.086 13 C -0.113 4.113 14 C -0.140 4.140 15 C -0.322 4.322 16 C -0.152 4.152 17 O -0.361 6.361 18 Si 0.656 3.344 19 S 0.473 5.527 20 C -0.175 4.175 21 H 0.100 0.900 22 H 0.125 0.875 23 H 0.104 0.896 24 H 0.128 0.872 25 H 0.116 0.884 26 H 0.245 0.755 27 H 0.170 0.830 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.258 0.742 33 H -0.220 1.220 34 H -0.184 1.184 35 H 0.091 0.909 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.014 0.939 7.364 8.012 hybrid contribution -0.197 1.762 -1.293 2.194 sum -3.211 2.701 6.071 7.380 Atomic orbital electron populations 1.23408 0.92070 1.07236 1.05616 1.87087 1.09996 1.11663 1.97701 1.24793 1.01173 0.93387 1.00943 0.86780 1.23149 0.93513 0.97245 1.00613 1.21862 0.98526 0.81321 0.97002 0.88079 1.45448 1.62308 1.04715 1.22505 1.17084 0.77421 0.83042 0.84146 1.90835 1.44471 1.87450 1.21521 1.24561 1.16138 0.97198 1.02385 1.20903 0.97212 0.89928 1.00573 1.18887 1.00227 0.98639 0.93524 1.20511 1.01720 0.89201 1.02521 1.23735 1.07250 0.99197 1.02028 1.24150 1.06289 0.89429 0.95285 1.86528 1.83307 1.28167 1.38091 0.94034 0.76666 0.82672 0.80984 1.82775 1.55765 0.98920 1.15237 1.23745 0.98598 0.99026 0.96176 0.89982 0.87509 0.89603 0.87195 0.88414 0.75506 0.82959 0.91217 0.89270 0.91787 0.87183 0.74180 1.22044 1.18359 0.90944 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.25 10.76 113.37 1.22 1.47 16 2 S -0.29 -0.61 22.17 -56.49 -1.25 -1.86 16 3 C -0.07 0.12 4.15 31.12 0.13 0.25 16 4 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 5 C -0.11 0.26 7.42 31.12 0.23 0.49 16 6 C 0.12 0.13 4.33 45.52 0.20 0.33 16 7 H 0.10 0.46 7.46 -2.39 -0.02 0.45 16 8 N -0.70 -1.40 5.26 -444.10 -2.33 -3.74 16 9 C 0.60 5.12 7.78 86.42 0.67 5.79 16 10 O -0.56 -9.07 16.44 -4.36 -0.07 -9.14 16 11 C -0.28 -1.84 6.45 24.08 0.16 -1.69 16 12 C -0.05 -0.36 9.80 21.72 0.21 -0.15 16 13 C -0.10 -0.45 5.75 -21.05 -0.12 -0.58 16 14 C -0.08 -0.11 8.70 71.24 0.62 0.51 16 15 C -0.20 -0.48 5.57 24.68 0.14 -0.34 16 16 C -0.04 0.17 2.75 71.24 0.20 0.37 16 17 O -0.55 2.85 9.81 -148.98 -1.46 1.39 16 18 Si 0.75 -4.02 31.30 68.60 2.15 -1.87 16 19 S 0.21 0.35 19.78 -56.49 -1.12 -0.77 16 20 C -0.13 -0.01 7.47 31.12 0.23 0.22 16 21 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 22 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 23 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.11 -0.23 8.10 -2.39 -0.02 -0.25 16 25 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.41 -1.04 7.81 -92.71 -0.72 -1.77 16 27 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 28 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.09 -0.03 6.42 -2.39 -0.02 -0.05 16 30 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 31 H 0.11 -0.97 7.96 -2.39 -0.02 -0.99 16 32 H 0.41 -6.30 8.74 -74.06 -0.65 -6.94 16 33 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 34 H -0.26 0.55 7.11 99.48 0.71 1.26 16 35 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.11 0.06 8.10 -2.39 -0.02 0.04 16 Total: 0.00 -18.09 327.68 -0.44 -18.53 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: -0.23 Total: -9.22 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 3.88 Total: 6.67 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -2.33 Total: -3.74 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.53 Total: -7.75 kcal Atomic # 14 Polarization: -4.02 SS G_CDS: 2.15 Total: -1.87 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.37 Total: -2.64 kcal Total: -18.09 -0.44 -18.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_6739946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.948 kcal (2) G-P(sol) polarization free energy of solvation -18.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds