Wall clock time and date at job start Sat Mar 6 2021 19:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 103.00067 * 2 1 4 4 H 1.08998 * 112.85134 * 43.80774 * 3 2 1 5 5 C 1.53781 * 113.61755 * 175.00140 * 3 2 1 6 6 C 1.53779 * 87.08095 * 139.98138 * 5 3 2 7 7 H 1.09000 * 113.61869 * 219.93298 * 6 5 3 8 8 N 1.46500 * 113.61319 * 89.11770 * 6 5 3 9 9 C 1.34785 * 119.99956 * 154.99703 * 8 6 5 10 10 O 1.21272 * 120.00006 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99678 * 179.97438 * 9 8 6 12 12 N 1.46507 * 109.46822 * 180.02562 * 11 9 8 13 13 C 1.36837 * 125.06008 * 265.31519 * 12 11 9 14 14 C 1.34238 * 109.93192 * 180.13684 * 13 12 11 15 15 C 1.50693 * 126.49597 * 179.87185 * 14 13 12 16 16 O 1.42907 * 109.47661 * 104.68666 * 15 14 13 17 17 Si 1.86298 * 109.47618 * 344.68356 * 15 14 13 18 18 C 1.46492 * 107.00223 * 359.60333 * 14 13 12 19 19 C 1.39582 * 134.03159 * 180.24199 * 18 14 13 20 20 C 1.36663 * 119.76275 * 179.97438 * 19 18 14 21 21 C 1.38785 * 120.52708 * 0.04289 * 20 19 18 22 22 C 1.37785 * 120.66816 * 359.97173 * 21 20 19 23 23 C 1.37687 * 125.05923 * 84.99883 * 12 11 9 24 24 C 1.53771 * 87.08423 * 334.56825 * 6 5 3 25 25 H 1.08994 * 109.47580 * 59.99735 * 1 2 3 26 26 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46718 * 299.99792 * 1 2 3 28 28 H 1.09000 * 113.61311 * 25.43291 * 5 3 2 29 29 H 1.08997 * 113.69255 * 254.54247 * 5 3 2 30 30 H 0.96997 * 120.00106 * 335.00531 * 8 6 5 31 31 H 1.08996 * 109.47378 * 60.00375 * 11 9 8 32 32 H 1.08996 * 109.47337 * 299.99903 * 11 9 8 33 33 H 1.07998 * 125.03148 * 359.97438 * 13 12 11 34 34 H 1.09000 * 109.46936 * 224.68289 * 15 14 13 35 35 H 0.96697 * 114.00527 * 179.97438 * 16 15 14 36 36 H 1.48506 * 109.99834 * 298.68714 * 17 15 14 37 37 H 1.48502 * 110.00011 * 59.99978 * 17 15 14 38 38 H 1.08004 * 120.11997 * 359.97438 * 19 18 14 39 39 H 1.08003 * 119.73695 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.66747 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.11267 * 179.97438 * 22 21 20 42 42 H 1.09004 * 113.61393 * 139.97719 * 24 6 5 43 43 H 1.08999 * 113.61643 * 270.88061 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 3.7283 2.0520 0.1228 6 6 3.5205 3.1738 -0.9084 7 1 4.3243 3.2481 -1.6408 8 7 3.1761 4.4654 -0.3089 9 6 3.4493 5.6087 -0.9684 10 8 3.9799 5.5682 -2.0581 11 6 3.0945 6.9373 -0.3520 12 7 3.4901 8.0177 -1.2590 13 6 4.6742 8.7009 -1.1985 14 6 4.7189 9.6261 -2.1700 15 6 5.8481 10.5862 -2.4421 16 8 6.5757 10.1521 -3.5929 17 14 6.9881 10.6376 -0.9696 18 6 3.4647 9.5210 -2.9196 19 6 2.9335 10.1939 -4.0212 20 6 1.6993 9.8493 -4.4961 21 6 0.9689 8.8360 -3.8914 22 6 1.4740 8.1590 -2.8028 23 6 2.7284 8.4926 -2.3031 24 6 2.3008 2.3816 -1.4077 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.3572 1.2382 -0.2382 29 1 4.0270 2.4133 1.1068 30 1 2.7514 4.4979 0.5626 31 1 3.6186 7.0491 0.5972 32 1 2.0190 6.9828 -0.1807 33 1 5.4558 8.5238 -0.4745 34 1 5.4428 11.5818 -2.6228 35 1 7.3188 10.7247 -3.8275 36 1 6.2511 11.1180 0.2268 37 1 7.5473 9.2861 -0.7127 38 1 3.4959 10.9840 -4.4965 39 1 1.2885 10.3705 -5.3483 40 1 -0.0050 8.5748 -4.2785 41 1 0.8978 7.3722 -2.3389 42 1 1.4455 3.0091 -1.6587 43 1 2.5393 1.6580 -2.1871 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525166_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:34 Heat of formation + Delta-G solvation = 38.292088 kcal Electronic energy + Delta-G solvation = -25924.808416 eV Core-core repulsion = 22257.786750 eV Total energy + Delta-G solvation = -3667.021666 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66298 -41.28007 -39.39166 -38.10385 -37.60080 -34.69931 -34.09192 -31.53068 -30.38089 -29.88956 -29.18947 -26.89238 -26.57207 -25.47925 -23.87443 -22.93307 -21.92597 -20.81557 -20.61422 -18.88369 -18.32577 -18.25874 -17.80169 -17.65303 -16.93575 -16.54206 -16.45300 -16.03432 -15.73396 -15.47981 -15.38548 -15.03573 -14.88734 -14.81519 -14.53994 -14.50781 -14.19072 -14.10830 -13.87570 -13.65433 -13.62935 -13.32881 -12.77501 -12.66273 -12.60954 -12.52449 -12.04886 -11.91182 -11.81753 -11.69128 -11.32208 -10.90971 -10.65566 -10.33145 -10.17795 -9.27036 -8.76222 -8.74419 -4.95604 0.03101 0.55354 0.70304 1.21766 1.28157 1.33741 1.54925 1.57598 1.70131 1.98205 2.00264 2.86623 3.23933 3.28057 3.42144 3.46520 3.57245 3.60980 3.67896 3.80948 3.84499 3.96648 3.98659 4.16965 4.21731 4.26040 4.27452 4.33808 4.37356 4.50729 4.59421 4.60490 4.61524 4.70112 4.70190 4.79280 4.82713 4.83443 4.89291 5.06233 5.35435 5.43144 5.57419 5.64085 5.65219 6.02564 6.13827 6.31502 6.98472 6.99126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.305 6.305 3 C -0.067 4.067 4 H 0.124 0.876 5 C -0.106 4.106 6 C 0.122 3.878 7 H 0.085 0.915 8 N -0.692 5.692 9 C 0.494 3.506 10 O -0.569 6.569 11 C 0.087 3.913 12 N -0.468 5.468 13 C 0.053 3.947 14 C -0.180 4.180 15 C -0.052 4.052 16 O -0.571 6.571 17 Si 0.789 3.211 18 C -0.120 4.120 19 C -0.082 4.082 20 C -0.151 4.151 21 C -0.102 4.102 22 C -0.136 4.136 23 C 0.090 3.910 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.421 0.579 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.176 0.824 34 H 0.079 0.921 35 H 0.398 0.602 36 H -0.282 1.282 37 H -0.294 1.294 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 2.371 6.005 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.077 6.077 3 C -0.195 4.195 4 H 0.142 0.858 5 C -0.146 4.146 6 C 0.014 3.986 7 H 0.103 0.897 8 N -0.346 5.346 9 C 0.280 3.720 10 O -0.447 6.447 11 C -0.037 4.037 12 N -0.151 5.151 13 C -0.073 4.073 14 C -0.187 4.187 15 C -0.161 4.161 16 O -0.380 6.380 17 Si 0.692 3.308 18 C -0.124 4.124 19 C -0.101 4.101 20 C -0.170 4.170 21 C -0.121 4.121 22 C -0.156 4.156 23 C -0.015 4.015 24 C -0.176 4.176 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.260 0.740 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.097 0.903 35 H 0.249 0.751 36 H -0.208 1.208 37 H -0.222 1.222 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.094 0.906 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.516 0.420 6.299 6.492 hybrid contribution -1.468 0.450 -0.088 1.538 sum -2.984 0.870 6.211 6.945 Atomic orbital electron populations 1.23390 0.91798 1.07158 1.05720 1.87199 1.10301 1.12503 1.97711 1.24784 1.01023 0.92910 1.00810 0.85794 1.23115 0.93574 0.97128 1.00748 1.21713 0.97933 0.82252 0.96680 0.89723 1.45448 1.62278 1.03898 1.22967 1.21436 0.78049 0.87061 0.85450 1.90821 1.43516 1.87752 1.22576 1.21987 1.06393 0.81746 0.93578 1.43376 1.14796 1.30123 1.26803 1.21727 0.89439 0.94381 1.01715 1.20059 0.96275 1.02990 0.99422 1.24343 0.95821 0.96636 0.99303 1.86514 1.48330 1.55788 1.47403 0.94109 0.81945 0.81478 0.73238 1.19370 0.95049 0.99347 0.98651 1.20503 0.95878 0.99295 0.94405 1.20983 0.94846 0.99417 1.01761 1.21193 1.00686 0.95437 0.94793 1.20258 0.93205 1.02778 0.99405 1.18478 0.94785 0.96996 0.91211 1.23704 0.98791 0.98997 0.96114 0.89957 0.87784 0.89316 0.88282 0.87956 0.74033 0.82473 0.83203 0.80760 0.90257 0.75122 1.20827 1.22153 0.85414 0.83849 0.83223 0.84826 0.90578 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.42 10.76 113.37 1.22 1.64 16 2 S -0.31 -0.28 22.17 -56.49 -1.25 -1.53 16 3 C -0.07 0.30 4.15 31.12 0.13 0.42 16 4 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 5 C -0.11 0.50 7.42 31.12 0.23 0.73 16 6 C 0.12 -0.21 4.32 45.51 0.20 -0.01 16 7 H 0.08 0.38 7.46 -2.39 -0.02 0.37 16 8 N -0.69 3.55 5.26 -440.05 -2.32 1.23 16 9 C 0.49 0.93 7.90 87.66 0.69 1.62 16 10 O -0.57 -8.28 16.02 -3.01 -0.05 -8.33 16 11 C 0.09 -0.32 6.48 85.63 0.55 0.23 16 12 N -0.47 -3.01 2.27 -519.98 -1.18 -4.19 16 13 C 0.05 0.44 9.89 83.00 0.82 1.26 16 14 C -0.18 -1.94 5.61 -18.63 -0.10 -2.05 16 15 C -0.05 -0.23 3.05 71.23 0.22 -0.02 16 16 O -0.57 -3.41 12.86 -148.98 -1.92 -5.33 16 17 Si 0.79 -0.54 30.80 68.60 2.11 1.58 16 18 C -0.12 -1.53 6.35 -20.20 -0.13 -1.66 16 19 C -0.08 -0.83 10.05 22.23 0.22 -0.60 16 20 C -0.15 -0.99 9.97 22.03 0.22 -0.77 16 21 C -0.10 -0.54 10.01 22.29 0.22 -0.31 16 22 C -0.14 -0.91 10.00 22.37 0.22 -0.69 16 23 C 0.09 0.93 6.80 39.03 0.27 1.20 16 24 C -0.13 0.28 7.47 31.12 0.23 0.51 16 25 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.10 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.10 -0.25 8.10 -2.39 -0.02 -0.27 16 29 H 0.10 -0.81 8.14 -2.39 -0.02 -0.82 16 30 H 0.42 -5.42 8.70 -92.71 -0.81 -6.23 16 31 H 0.16 -1.75 8.12 -2.39 -0.02 -1.76 16 32 H 0.15 -1.50 8.14 -2.39 -0.02 -1.52 16 33 H 0.18 0.72 6.30 -2.91 -0.02 0.71 16 34 H 0.08 0.11 7.96 -2.39 -0.02 0.09 16 35 H 0.40 -2.25 8.74 -74.06 -0.65 -2.89 16 36 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 37 H -0.29 -1.69 7.04 99.48 0.70 -0.99 16 38 H 0.13 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.14 0.21 8.06 -2.91 -0.02 0.19 16 40 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 41 H 0.13 0.20 8.06 -2.91 -0.02 0.18 16 42 H 0.08 -0.15 8.14 -2.38 -0.02 -0.16 16 43 H 0.09 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -30.24 376.47 0.23 -30.01 By element: Atomic # 1 Polarization: -14.57 SS G_CDS: -0.39 Total: -14.96 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.22 Total: 1.51 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -3.50 Total: -2.96 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.96 Total: -13.66 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.11 Total: 1.58 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -1.25 Total: -1.53 kcal Total: -30.24 0.23 -30.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525166_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.305 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds