Wall clock time and date at job start Sat Mar 6 2021 19:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42892 * 109.47349 * 2 1 4 4 C 1.35895 * 117.00215 * 84.91650 * 3 2 1 5 5 C 1.38733 * 120.05628 * 174.25711 * 4 3 2 6 6 C 1.38153 * 119.94284 * 179.70187 * 5 4 3 7 7 C 1.38264 * 120.05228 * 0.58873 * 6 5 4 8 8 C 1.50702 * 119.93995 * 179.70177 * 7 6 5 9 9 O 1.42905 * 109.47108 * 244.97936 * 8 7 6 10 10 Si 1.86296 * 109.47391 * 4.98108 * 8 7 6 11 11 C 1.38264 * 120.11231 * 359.68820 * 7 6 5 12 12 C 1.38143 * 120.05889 * 0.02562 * 11 7 6 13 13 C 1.50707 * 109.47118 * 239.99761 * 2 1 3 14 14 O 1.21283 * 119.99947 * 120.00190 * 13 2 1 15 15 N 1.34779 * 119.99822 * 300.00467 * 13 2 1 16 16 C 1.46491 * 119.99807 * 180.02562 * 15 13 2 17 17 H 1.08999 * 112.85430 * 23.80008 * 16 15 13 18 18 C 1.53780 * 113.61616 * 154.99813 * 16 15 13 19 19 C 1.53780 * 87.08412 * 89.11538 * 18 16 15 20 20 H 1.08995 * 113.61586 * 270.88961 * 19 18 16 21 21 S 1.81397 * 113.61969 * 139.98019 * 19 18 16 22 22 C 1.76195 * 103.00388 * 174.99985 * 21 19 18 23 23 C 1.38980 * 120.07635 * 359.73095 * 22 21 19 24 24 C 1.38088 * 119.91574 * 179.76187 * 23 22 21 25 25 C 1.38306 * 120.07661 * 0.48984 * 24 23 22 26 26 C 1.38301 * 120.16555 * 359.75957 * 25 24 23 27 27 C 1.38078 * 120.07737 * 0.02562 * 26 25 24 28 28 C 1.53785 * 87.08059 * 25.43472 * 19 18 16 29 29 H 1.09000 * 109.47425 * 59.99934 * 1 2 3 30 30 H 1.09003 * 109.47740 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47322 * 300.00144 * 1 2 3 32 32 H 1.08999 * 109.47128 * 120.00522 * 2 1 3 33 33 H 1.08002 * 120.02998 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.96861 * 180.31675 * 6 5 4 35 35 H 1.09002 * 109.46858 * 124.98584 * 8 7 6 36 36 H 0.96699 * 113.99780 * 60.00270 * 9 8 7 37 37 H 1.48498 * 110.00149 * 179.97438 * 10 8 7 38 38 H 1.48497 * 110.00262 * 301.32087 * 10 8 7 39 39 H 1.08002 * 119.97118 * 179.97438 * 11 7 6 40 40 H 1.08002 * 120.02976 * 180.02562 * 12 11 7 41 41 H 0.97000 * 119.99989 * 359.97438 * 15 13 2 42 42 H 1.09004 * 113.61740 * 203.66060 * 18 16 15 43 43 H 1.08994 * 113.61581 * 334.47951 * 18 16 15 44 44 H 1.07998 * 120.04046 * 359.97438 * 23 22 21 45 45 H 1.07994 * 119.95955 * 180.22558 * 24 23 22 46 46 H 1.08003 * 119.91173 * 179.74687 * 25 24 23 47 47 H 1.07996 * 119.95869 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.03940 * 179.97438 * 27 26 25 49 49 H 1.08996 * 113.61388 * 220.02100 * 28 19 18 50 50 H 1.08996 * 113.61544 * 89.11749 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1108 1.9646 1.2060 5 6 2.6773 3.2281 1.2930 6 6 2.7768 3.8562 2.5195 7 6 2.3235 3.2217 3.6612 8 6 2.4394 3.9064 4.9987 9 8 3.3377 3.1725 5.8333 10 14 3.0890 5.6356 4.7568 11 6 1.7638 1.9601 3.5779 12 6 1.6566 1.3302 2.3531 13 6 2.0323 -0.7105 -1.2305 14 8 2.7296 -0.1211 -2.0288 15 7 1.7066 -2.0008 -1.4437 16 6 2.1954 -2.6916 -2.6395 17 1 3.1009 -2.2425 -3.0474 18 6 2.2847 -4.2181 -2.4759 19 6 0.8300 -4.2775 -2.9712 20 1 0.0931 -4.1970 -2.1721 21 16 0.5017 -5.6608 -4.0977 22 6 -1.2365 -5.5513 -4.3640 23 6 -1.9752 -4.5529 -3.7402 24 6 -3.3366 -4.4672 -3.9551 25 6 -3.9666 -5.3795 -4.7819 26 6 -3.2355 -6.3775 -5.4002 27 6 -1.8732 -6.4667 -5.1935 28 6 1.1041 -2.9473 -3.6926 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.0362 3.7220 0.4022 34 1 3.2131 4.8419 2.5870 35 1 1.4580 3.9497 5.4709 36 1 4.2322 3.0937 5.4747 37 1 3.2074 6.3218 6.0684 38 1 4.4125 5.5917 4.0848 39 1 1.4108 1.4664 4.4712 40 1 1.2189 0.3450 2.2885 41 1 1.1492 -2.4723 -0.8050 42 1 2.9963 -4.6891 -3.1541 43 1 2.4088 -4.5399 -1.4420 44 1 -1.4845 -3.8429 -3.0909 45 1 -3.9106 -3.6895 -3.4736 46 1 -5.0321 -5.3125 -4.9448 47 1 -3.7310 -7.0884 -6.0448 48 1 -1.3030 -7.2466 -5.6763 49 1 0.2737 -2.2432 -3.6406 50 1 1.4930 -3.0708 -4.7033 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:41 Heat of formation + Delta-G solvation = -11.791992 kcal Electronic energy + Delta-G solvation = -31681.326290 eV Core-core repulsion = 27346.886634 eV Total energy + Delta-G solvation = -4334.439656 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.138 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93858 -41.08987 -39.91380 -39.70108 -38.77865 -37.26165 -34.85574 -33.07213 -32.11882 -32.06812 -31.93948 -31.41670 -27.17918 -27.06131 -26.61334 -25.38864 -24.19947 -23.73472 -23.47648 -22.60820 -21.62977 -20.86694 -19.56113 -18.82538 -18.73649 -18.29979 -17.86256 -17.15669 -16.93102 -16.81464 -16.45247 -16.38127 -16.22604 -15.99039 -15.83858 -15.70097 -15.45833 -15.03301 -14.94435 -14.76960 -14.50290 -14.44115 -14.29477 -14.20361 -13.94012 -13.80449 -13.63753 -13.59637 -13.30478 -13.27799 -13.03681 -12.33550 -12.24140 -12.21035 -12.16606 -12.13555 -12.04433 -11.78599 -11.57754 -11.15616 -10.92906 -10.78195 -10.59639 -10.32355 -10.08333 -10.00257 -9.25064 -8.41302 -4.96688 0.20102 0.20491 0.30624 0.35259 0.46553 1.27198 1.28792 1.31916 1.40207 1.58602 1.95755 2.33558 2.61169 2.70696 3.07437 3.09705 3.25538 3.37234 3.45792 3.49351 3.60059 3.63966 3.68047 3.79152 3.81009 3.83484 3.92035 4.11519 4.13189 4.21281 4.25515 4.33661 4.38972 4.39380 4.44632 4.47525 4.50697 4.54111 4.55353 4.60314 4.68965 4.71513 4.78796 4.81504 4.94647 4.96366 5.14655 5.23556 5.25213 5.27416 5.37455 5.44195 5.50858 5.61566 5.88434 6.11752 6.29392 6.39210 6.95788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.067 3.933 3 O -0.283 6.283 4 C 0.135 3.865 5 C -0.141 4.141 6 C -0.076 4.076 7 C -0.155 4.155 8 C -0.070 4.070 9 O -0.531 6.531 10 Si 0.683 3.317 11 C -0.050 4.050 12 C -0.212 4.212 13 C 0.523 3.477 14 O -0.506 6.506 15 N -0.711 5.711 16 C 0.126 3.874 17 H 0.115 0.885 18 C -0.115 4.115 19 C -0.108 4.108 20 H 0.111 0.889 21 S -0.103 6.103 22 C -0.083 4.083 23 C -0.133 4.133 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.100 4.100 27 C -0.102 4.102 28 C -0.136 4.136 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.376 0.624 37 H -0.257 1.257 38 H -0.260 1.260 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.402 0.598 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.127 0.873 49 H 0.079 0.921 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -1.631 1.019 4.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 O -0.195 6.195 4 C 0.090 3.910 5 C -0.160 4.160 6 C -0.094 4.094 7 C -0.156 4.156 8 C -0.179 4.179 9 O -0.338 6.338 10 Si 0.585 3.415 11 C -0.068 4.068 12 C -0.230 4.230 13 C 0.307 3.693 14 O -0.379 6.379 15 N -0.365 5.365 16 C 0.019 3.981 17 H 0.133 0.867 18 C -0.154 4.154 19 C -0.237 4.237 20 H 0.129 0.871 21 S 0.144 5.856 22 C -0.196 4.196 23 C -0.156 4.156 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.177 4.177 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.223 0.777 37 H -0.182 1.182 38 H -0.185 1.185 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.237 0.763 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.145 0.855 49 H 0.098 0.902 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.309 -1.367 0.386 2.712 hybrid contribution -0.678 -0.536 1.112 1.408 sum -2.988 -1.903 1.498 3.846 Atomic orbital electron populations 1.22370 0.92271 1.03837 1.05077 1.22168 0.95912 0.83383 0.97845 1.86218 1.80920 1.25300 1.27101 1.19078 0.95118 0.92881 0.83943 1.20419 1.03137 0.93647 0.98787 1.20893 0.97900 0.99119 0.91486 1.20184 1.03488 0.96571 0.95321 1.24942 0.98197 1.04960 0.89852 1.86597 1.24303 1.75085 1.47775 0.94993 0.85364 0.77884 0.83281 1.20801 0.95472 0.93665 0.96900 1.21318 1.07277 1.01783 0.92668 1.20100 0.80412 0.81812 0.86972 1.90790 1.35903 1.65316 1.45859 1.45529 1.54232 1.11553 1.25184 1.21810 0.98565 0.92054 0.85650 0.86661 1.23178 0.93886 0.95115 1.03244 1.25091 1.01402 0.96672 1.00575 0.87111 1.85574 1.02047 1.39980 1.57969 1.21745 0.96981 0.99363 1.01474 1.21151 0.94808 0.98477 1.01190 1.21098 0.94097 0.98837 0.98037 1.21248 1.00270 0.95378 0.97613 1.21151 0.93517 0.98239 0.99079 1.20813 0.94792 0.98558 0.98419 1.23784 0.99716 0.94651 0.99558 0.90344 0.90342 0.90104 0.88057 0.84467 0.84842 0.86516 0.77656 1.18228 1.18480 0.85290 0.85124 0.76339 0.87302 0.89356 0.86055 0.85683 0.85637 0.85341 0.85460 0.90196 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.57 9.07 37.15 0.34 0.91 16 2 C 0.07 -0.07 2.64 -27.88 -0.07 -0.14 16 3 O -0.28 -0.65 9.33 -39.32 -0.37 -1.01 16 4 C 0.14 0.18 6.60 -39.22 -0.26 -0.08 16 5 C -0.14 -0.14 9.99 -39.43 -0.39 -0.54 16 6 C -0.08 0.01 8.66 -39.60 -0.34 -0.33 16 7 C -0.16 0.01 5.35 -104.60 -0.56 -0.55 16 8 C -0.07 0.03 2.80 36.01 0.10 0.13 16 9 O -0.53 -0.57 12.83 -35.23 -0.45 -1.02 16 10 Si 0.68 -0.67 29.88 -169.99 -5.08 -5.75 16 11 C -0.05 0.01 9.68 -39.61 -0.38 -0.38 16 12 C -0.21 0.07 8.24 -39.43 -0.33 -0.25 16 13 C 0.52 0.37 7.23 -10.98 -0.08 0.30 16 14 O -0.51 -2.83 16.10 -14.35 -0.23 -3.06 16 15 N -0.71 1.84 5.15 -53.02 -0.27 1.57 16 16 C 0.13 -0.25 4.32 -67.12 -0.29 -0.54 16 17 H 0.12 -0.02 7.46 -51.93 -0.39 -0.41 16 18 C -0.11 0.37 7.42 -25.92 -0.19 0.17 16 19 C -0.11 0.26 2.89 -25.92 -0.08 0.19 16 20 H 0.11 -0.37 6.85 -51.93 -0.36 -0.73 16 21 S -0.10 -0.02 21.72 -107.50 -2.33 -2.36 16 22 C -0.08 -0.10 6.11 -39.03 -0.24 -0.34 16 23 C -0.13 -0.03 9.32 -39.36 -0.37 -0.40 16 24 C -0.10 0.01 10.04 -39.61 -0.40 -0.39 16 25 C -0.12 0.00 10.04 -39.53 -0.40 -0.39 16 26 C -0.10 -0.03 10.04 -39.62 -0.40 -0.42 16 27 C -0.10 -0.11 9.79 -39.37 -0.39 -0.50 16 28 C -0.14 0.26 7.38 -25.91 -0.19 0.07 16 29 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 30 H 0.08 -0.45 7.56 -51.93 -0.39 -0.84 16 31 H 0.08 -0.27 6.91 -51.93 -0.36 -0.63 16 32 H 0.10 -0.31 6.32 -51.93 -0.33 -0.64 16 33 H 0.14 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.13 -0.23 4.84 -52.49 -0.25 -0.49 16 35 H 0.12 -0.14 7.96 -51.93 -0.41 -0.56 16 36 H 0.38 -0.59 8.70 45.56 0.40 -0.19 16 37 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 38 H -0.26 -0.25 7.01 56.52 0.40 0.14 16 39 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.13 -0.34 5.43 -52.49 -0.28 -0.63 16 41 H 0.40 -2.20 8.12 -40.82 -0.33 -2.54 16 42 H 0.11 -0.33 8.10 -51.93 -0.42 -0.75 16 43 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 44 H 0.12 -0.18 5.64 -52.49 -0.30 -0.47 16 45 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 46 H 0.13 -0.23 8.06 -52.48 -0.42 -0.65 16 47 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 48 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 49 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 50 H 0.11 -0.15 8.10 -51.93 -0.42 -0.57 16 LS Contribution 421.50 15.07 6.35 6.35 Total: 0.00 -9.31 421.50 -14.15 -23.46 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: -6.86 Total: -14.69 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.91 Total: -3.50 kcal Atomic # 7 Polarization: 1.84 SS G_CDS: -0.27 Total: 1.57 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -1.05 Total: -5.10 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.08 Total: -5.75 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.33 Total: -2.36 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -9.31 -14.15 -23.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.672 kcal (2) G-P(sol) polarization free energy of solvation -9.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds