Wall clock time and date at job start Sat Mar 6 2021 19:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42892 * 109.47349 * 2 1 4 4 C 1.35895 * 117.00215 * 84.91650 * 3 2 1 5 5 C 1.38733 * 120.05628 * 174.25711 * 4 3 2 6 6 C 1.38153 * 119.94284 * 179.70187 * 5 4 3 7 7 C 1.38264 * 120.05228 * 0.58873 * 6 5 4 8 8 C 1.50702 * 119.93995 * 179.70177 * 7 6 5 9 9 O 1.42905 * 109.47108 * 244.97936 * 8 7 6 10 10 Si 1.86296 * 109.47391 * 4.98108 * 8 7 6 11 11 C 1.38264 * 120.11231 * 359.68820 * 7 6 5 12 12 C 1.38143 * 120.05889 * 0.02562 * 11 7 6 13 13 C 1.50707 * 109.47118 * 239.99761 * 2 1 3 14 14 O 1.21283 * 119.99947 * 120.00190 * 13 2 1 15 15 N 1.34779 * 119.99822 * 300.00467 * 13 2 1 16 16 C 1.46491 * 119.99807 * 180.02562 * 15 13 2 17 17 H 1.08999 * 112.85430 * 23.80008 * 16 15 13 18 18 C 1.53780 * 113.61616 * 154.99813 * 16 15 13 19 19 C 1.53780 * 87.08412 * 89.11538 * 18 16 15 20 20 H 1.08995 * 113.61586 * 270.88961 * 19 18 16 21 21 S 1.81397 * 113.61969 * 139.98019 * 19 18 16 22 22 C 1.76195 * 103.00388 * 174.99985 * 21 19 18 23 23 C 1.38980 * 120.07635 * 359.73095 * 22 21 19 24 24 C 1.38088 * 119.91574 * 179.76187 * 23 22 21 25 25 C 1.38306 * 120.07661 * 0.48984 * 24 23 22 26 26 C 1.38301 * 120.16555 * 359.75957 * 25 24 23 27 27 C 1.38078 * 120.07737 * 0.02562 * 26 25 24 28 28 C 1.53785 * 87.08059 * 25.43472 * 19 18 16 29 29 H 1.09000 * 109.47425 * 59.99934 * 1 2 3 30 30 H 1.09003 * 109.47740 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47322 * 300.00144 * 1 2 3 32 32 H 1.08999 * 109.47128 * 120.00522 * 2 1 3 33 33 H 1.08002 * 120.02998 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.96861 * 180.31675 * 6 5 4 35 35 H 1.09002 * 109.46858 * 124.98584 * 8 7 6 36 36 H 0.96699 * 113.99780 * 60.00270 * 9 8 7 37 37 H 1.48498 * 110.00149 * 179.97438 * 10 8 7 38 38 H 1.48497 * 110.00262 * 301.32087 * 10 8 7 39 39 H 1.08002 * 119.97118 * 179.97438 * 11 7 6 40 40 H 1.08002 * 120.02976 * 180.02562 * 12 11 7 41 41 H 0.97000 * 119.99989 * 359.97438 * 15 13 2 42 42 H 1.09004 * 113.61740 * 203.66060 * 18 16 15 43 43 H 1.08994 * 113.61581 * 334.47951 * 18 16 15 44 44 H 1.07998 * 120.04046 * 359.97438 * 23 22 21 45 45 H 1.07994 * 119.95955 * 180.22558 * 24 23 22 46 46 H 1.08003 * 119.91173 * 179.74687 * 25 24 23 47 47 H 1.07996 * 119.95869 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.03940 * 179.97438 * 27 26 25 49 49 H 1.08996 * 113.61388 * 220.02100 * 28 19 18 50 50 H 1.08996 * 113.61544 * 89.11749 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1108 1.9646 1.2060 5 6 2.6773 3.2281 1.2930 6 6 2.7768 3.8562 2.5195 7 6 2.3235 3.2217 3.6612 8 6 2.4394 3.9064 4.9987 9 8 3.3377 3.1725 5.8333 10 14 3.0890 5.6356 4.7568 11 6 1.7638 1.9601 3.5779 12 6 1.6566 1.3302 2.3531 13 6 2.0323 -0.7105 -1.2305 14 8 2.7296 -0.1211 -2.0288 15 7 1.7066 -2.0008 -1.4437 16 6 2.1954 -2.6916 -2.6395 17 1 3.1009 -2.2425 -3.0474 18 6 2.2847 -4.2181 -2.4759 19 6 0.8300 -4.2775 -2.9712 20 1 0.0931 -4.1970 -2.1721 21 16 0.5017 -5.6608 -4.0977 22 6 -1.2365 -5.5513 -4.3640 23 6 -1.9752 -4.5529 -3.7402 24 6 -3.3366 -4.4672 -3.9551 25 6 -3.9666 -5.3795 -4.7819 26 6 -3.2355 -6.3775 -5.4002 27 6 -1.8732 -6.4667 -5.1935 28 6 1.1041 -2.9473 -3.6926 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8899 33 1 3.0362 3.7220 0.4022 34 1 3.2131 4.8419 2.5870 35 1 1.4580 3.9497 5.4709 36 1 4.2322 3.0937 5.4747 37 1 3.2074 6.3218 6.0684 38 1 4.4125 5.5917 4.0848 39 1 1.4108 1.4664 4.4712 40 1 1.2189 0.3450 2.2885 41 1 1.1492 -2.4723 -0.8050 42 1 2.9963 -4.6891 -3.1541 43 1 2.4088 -4.5399 -1.4420 44 1 -1.4845 -3.8429 -3.0909 45 1 -3.9106 -3.6895 -3.4736 46 1 -5.0321 -5.3125 -4.9448 47 1 -3.7310 -7.0884 -6.0448 48 1 -1.3030 -7.2466 -5.6763 49 1 0.2737 -2.2432 -3.6406 50 1 1.4930 -3.0708 -4.7033 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_10157680.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:40 Heat of formation + Delta-G solvation = -7.527632 kcal Electronic energy + Delta-G solvation = -31681.141373 eV Core-core repulsion = 27346.886634 eV Total energy + Delta-G solvation = -4334.254739 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.138 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.91399 -41.04056 -39.86677 -39.65131 -38.80690 -37.27027 -34.85108 -32.95416 -32.07430 -32.02302 -31.89688 -31.36251 -27.05349 -26.90060 -26.55546 -25.27510 -24.15677 -23.69649 -23.42973 -22.58293 -21.57571 -20.77196 -19.50986 -18.77209 -18.68646 -18.29452 -17.79187 -17.14717 -16.87590 -16.71938 -16.38994 -16.35412 -16.19801 -15.92303 -15.80082 -15.68755 -15.42376 -14.98598 -14.87942 -14.76472 -14.42648 -14.34292 -14.27300 -14.17749 -13.88206 -13.66420 -13.57499 -13.36736 -13.27938 -13.20372 -12.93406 -12.25532 -12.23941 -12.16180 -12.10117 -12.07389 -11.90084 -11.69969 -11.58517 -11.10211 -10.97605 -10.74602 -10.58819 -10.26880 -10.04390 -9.97724 -9.24118 -8.40535 -4.91966 0.22077 0.23922 0.32328 0.37705 0.52876 1.31945 1.33076 1.36265 1.45725 1.59520 1.95388 2.42904 2.63895 2.73350 3.22591 3.26262 3.38473 3.45182 3.62224 3.64480 3.72516 3.77475 3.81372 3.85553 3.91145 3.92083 4.00021 4.21078 4.25989 4.34347 4.40523 4.47075 4.52838 4.53690 4.59037 4.61925 4.62496 4.65885 4.69418 4.73123 4.76710 4.84926 4.91811 4.99008 5.02687 5.08926 5.18610 5.26599 5.28339 5.38471 5.42049 5.47951 5.54413 5.67274 5.94324 6.22251 6.39137 6.49126 7.02570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.064 3.936 3 O -0.312 6.312 4 C 0.121 3.879 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.158 4.158 8 C -0.072 4.072 9 O -0.548 6.548 10 Si 0.757 3.243 11 C -0.056 4.056 12 C -0.207 4.207 13 C 0.521 3.479 14 O -0.565 6.565 15 N -0.691 5.691 16 C 0.125 3.875 17 H 0.094 0.906 18 C -0.104 4.104 19 C -0.095 4.095 20 H 0.128 0.872 21 S -0.133 6.133 22 C -0.096 4.096 23 C -0.140 4.140 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.385 0.615 37 H -0.303 1.303 38 H -0.286 1.286 39 H 0.141 0.859 40 H 0.155 0.845 41 H 0.420 0.580 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.137 0.863 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.127 0.873 49 H 0.078 0.922 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -2.458 2.399 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 O -0.225 6.225 4 C 0.076 3.924 5 C -0.179 4.179 6 C -0.096 4.096 7 C -0.158 4.158 8 C -0.182 4.182 9 O -0.357 6.357 10 Si 0.663 3.337 11 C -0.074 4.074 12 C -0.225 4.225 13 C 0.307 3.693 14 O -0.442 6.442 15 N -0.345 5.345 16 C 0.017 3.983 17 H 0.112 0.888 18 C -0.143 4.143 19 C -0.223 4.223 20 H 0.146 0.854 21 S 0.114 5.886 22 C -0.209 4.209 23 C -0.163 4.163 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.129 4.129 27 C -0.146 4.146 28 C -0.176 4.176 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.234 0.766 37 H -0.232 1.232 38 H -0.213 1.213 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.258 0.742 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.155 0.845 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.145 0.855 49 H 0.097 0.903 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.773 -2.247 1.769 4.735 hybrid contribution -0.213 -0.282 0.678 0.765 sum -3.987 -2.529 2.447 5.318 Atomic orbital electron populations 1.22385 0.90348 1.05723 1.04571 1.22406 0.97247 0.82233 0.97606 1.86183 1.81482 1.26907 1.27934 1.19252 0.95765 0.93149 0.84257 1.20578 1.03875 0.94216 0.99192 1.21004 0.97817 0.99602 0.91170 1.20252 1.03461 0.96855 0.95249 1.25057 0.98607 1.04813 0.89693 1.86567 1.25200 1.75366 1.48522 0.94132 0.83476 0.76088 0.79974 1.21009 0.95280 0.93652 0.97414 1.21528 1.06556 1.02603 0.91847 1.20534 0.79489 0.82368 0.86921 1.90767 1.38738 1.66759 1.47940 1.45361 1.53455 1.10587 1.25083 1.21730 0.97844 0.92768 0.85916 0.88764 1.23142 0.93277 0.93652 1.04250 1.25140 1.02198 0.94873 1.00105 0.85392 1.85655 1.02179 1.41520 1.59239 1.21898 0.97253 0.99844 1.01896 1.21394 0.95133 0.98490 1.01311 1.21419 0.94226 0.99221 0.97919 1.21548 1.01244 0.95198 0.97426 1.21403 0.93371 0.98776 0.99346 1.21002 0.95446 0.99052 0.99073 1.23735 0.99546 0.95025 0.99267 0.91959 0.87220 0.89485 0.85629 0.84853 0.83745 0.85457 0.76574 1.23159 1.21287 0.84148 0.82721 0.74181 0.87496 0.87531 0.84525 0.83749 0.83964 0.83960 0.85485 0.90346 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.38 9.07 71.98 0.65 2.04 16 2 C 0.06 -0.17 2.64 29.85 0.08 -0.10 16 3 O -0.31 -1.64 9.33 -73.33 -0.68 -2.32 16 4 C 0.12 0.33 6.60 22.51 0.15 0.48 16 5 C -0.16 -0.46 9.99 22.37 0.22 -0.23 16 6 C -0.08 0.01 8.66 22.26 0.19 0.20 16 7 C -0.16 0.11 5.35 -19.85 -0.11 0.00 16 8 C -0.07 0.11 2.80 71.24 0.20 0.31 16 9 O -0.55 -0.91 12.83 -148.98 -1.91 -2.82 16 10 Si 0.76 -1.32 29.88 68.60 2.05 0.73 16 11 C -0.06 0.08 9.68 22.25 0.22 0.30 16 12 C -0.21 0.39 8.24 22.37 0.18 0.58 16 13 C 0.52 0.86 7.23 87.66 0.63 1.49 16 14 O -0.56 -7.38 16.10 16.00 0.26 -7.12 16 15 N -0.69 4.18 5.15 -440.03 -2.27 1.91 16 16 C 0.12 -0.49 4.32 45.52 0.20 -0.29 16 17 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 18 C -0.10 0.74 7.42 31.12 0.23 0.98 16 19 C -0.09 0.53 2.89 31.12 0.09 0.62 16 20 H 0.13 -1.14 6.85 -2.39 -0.02 -1.16 16 21 S -0.13 -0.10 21.72 -56.49 -1.23 -1.33 16 22 C -0.10 -0.25 6.11 22.62 0.14 -0.11 16 23 C -0.14 0.02 9.32 22.41 0.21 0.23 16 24 C -0.11 0.12 10.04 22.25 0.22 0.34 16 25 C -0.13 0.09 10.04 22.30 0.22 0.31 16 26 C -0.11 -0.07 10.04 22.25 0.22 0.15 16 27 C -0.12 -0.36 9.79 22.41 0.22 -0.14 16 28 C -0.13 0.49 7.38 31.12 0.23 0.72 16 29 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.11 -1.60 7.56 -2.39 -0.02 -1.62 16 31 H 0.09 -0.75 6.91 -2.39 -0.02 -0.77 16 32 H 0.13 -1.02 6.32 -2.39 -0.02 -1.04 16 33 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.15 -0.48 4.84 -2.91 -0.01 -0.49 16 35 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 36 H 0.39 -1.29 8.70 -74.06 -0.64 -1.93 16 37 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 38 H -0.29 -0.71 7.01 99.48 0.70 -0.01 16 39 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 40 H 0.16 -1.19 5.43 -2.91 -0.02 -1.21 16 41 H 0.42 -5.62 8.12 -92.71 -0.75 -6.37 16 42 H 0.11 -0.66 8.10 -2.38 -0.02 -0.68 16 43 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 44 H 0.14 -0.59 5.64 -2.91 -0.02 -0.61 16 45 H 0.14 -0.82 8.06 -2.91 -0.02 -0.84 16 46 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 47 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 48 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 49 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 50 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 Total: 0.00 -24.62 421.50 0.24 -24.38 By element: Atomic # 1 Polarization: -20.92 SS G_CDS: -0.38 Total: -21.30 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 4.41 Total: 7.87 kcal Atomic # 7 Polarization: 4.18 SS G_CDS: -2.27 Total: 1.91 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -2.34 Total: -12.26 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: 2.05 Total: 0.73 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.23 Total: -1.33 kcal Total: -24.62 0.24 -24.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_10157680.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.849 kcal (2) G-P(sol) polarization free energy of solvation -24.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds