Wall clock time and date at job start Sat Mar 6 2021 19:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37655 * 125.67950 * 2 1 4 4 C 1.46681 * 126.23143 * 0.04113 * 3 2 1 5 5 O 1.21695 * 119.99790 * 354.59007 * 4 3 2 6 6 N 1.34776 * 119.99862 * 174.59253 * 4 3 2 7 7 C 1.46492 * 119.99794 * 185.04661 * 6 4 3 8 8 H 1.08996 * 112.85550 * 334.66362 * 7 6 4 9 9 C 1.53781 * 113.61526 * 105.86655 * 7 6 4 10 10 C 1.54054 * 86.98695 * 89.16022 * 9 7 6 11 11 H 1.09002 * 113.61005 * 270.88673 * 10 9 7 12 12 S 1.81397 * 113.69388 * 139.99339 * 10 9 7 13 13 C 1.76199 * 103.00225 * 87.46729 * 12 10 9 14 14 C 1.38980 * 120.07828 * 359.72560 * 13 12 10 15 15 C 1.38086 * 119.91561 * 179.76695 * 14 13 12 16 16 C 1.38305 * 120.07837 * 0.48414 * 15 14 13 17 17 C 1.38296 * 120.16570 * 359.76607 * 16 15 14 18 18 C 1.38090 * 120.07923 * 0.02562 * 17 16 15 19 19 C 1.53779 * 87.07543 * 25.43209 * 10 9 7 20 20 C 1.37871 * 107.53448 * 180.02562 * 3 2 1 21 21 C 1.39835 * 107.08396 * 0.02562 * 20 3 2 22 22 C 1.35456 * 107.86848 * 0.22797 * 21 20 3 23 23 C 1.50691 * 125.56500 * 179.77539 * 22 21 20 24 24 O 1.42904 * 109.47139 * 150.02282 * 23 22 21 25 25 Si 1.86302 * 109.47617 * 30.02291 * 23 22 21 26 26 H 1.09003 * 109.47289 * 95.83724 * 1 2 3 27 27 H 1.08999 * 109.47204 * 215.83720 * 1 2 3 28 28 H 1.08997 * 109.47127 * 335.84438 * 1 2 3 29 29 H 0.97004 * 119.99898 * 5.05150 * 6 4 3 30 30 H 1.09002 * 113.61473 * 203.66499 * 9 7 6 31 31 H 1.09005 * 113.61068 * 334.56753 * 9 7 6 32 32 H 1.07993 * 120.03956 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.95636 * 180.22482 * 15 14 13 34 34 H 1.08000 * 119.91548 * 179.74780 * 16 15 14 35 35 H 1.08002 * 119.96238 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.04208 * 179.97438 * 18 17 16 37 37 H 1.09000 * 113.61361 * 220.02208 * 19 10 9 38 38 H 1.08995 * 113.69049 * 89.13519 * 19 10 9 39 39 H 1.07994 * 126.46068 * 180.02562 * 20 3 2 40 40 H 1.08007 * 126.06924 * 179.97438 * 21 20 3 41 41 H 1.09010 * 109.47419 * 270.01832 * 23 22 21 42 42 H 0.96694 * 114.00423 * 300.00048 * 24 23 22 43 43 H 1.48498 * 109.99569 * 58.67946 * 25 23 22 44 44 H 1.48498 * 110.00398 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5125 0.0008 5 8 0.6261 2.7651 -0.0977 6 7 2.7078 3.5138 0.1107 7 6 2.2467 4.8997 0.2229 8 1 1.2621 5.0553 -0.2180 9 6 2.3866 5.4828 1.6390 10 6 3.8017 5.9309 1.2267 11 1 4.5699 5.1815 1.4177 12 16 4.2538 7.5760 1.8428 13 6 4.9244 7.2324 3.4355 14 6 4.9824 5.9235 3.8993 15 6 5.5131 5.6575 5.1461 16 6 5.9773 6.6927 5.9370 17 6 5.9165 7.9969 5.4810 18 6 5.3911 8.2701 4.2335 19 6 3.2923 5.9349 -0.2242 20 6 3.5780 0.6888 -0.0006 21 6 3.5521 -0.7093 -0.0015 22 6 2.2554 -1.1010 -0.0066 23 6 1.7709 -2.5278 -0.0141 24 8 0.5109 -2.6065 0.6554 25 14 3.0088 -3.6089 0.8632 26 1 -0.3634 -0.1045 -1.0223 27 1 -0.3633 -0.8331 0.6017 28 1 -0.3633 0.9377 0.4205 29 1 3.6576 3.3167 0.1155 30 1 1.7072 6.3113 1.8391 31 1 2.3779 4.7275 2.4250 32 1 4.6159 5.1152 3.2840 33 1 5.5617 4.6403 5.5056 34 1 6.3881 6.4821 6.9134 35 1 6.2796 8.8028 6.1015 36 1 5.3435 9.2888 3.8782 37 1 4.0142 5.5445 -0.9415 38 1 2.8601 6.8864 -0.5340 39 1 4.4584 1.3143 -0.0004 40 1 4.4132 -1.3613 -0.0026 41 1 1.6570 -2.8676 -1.0437 42 1 0.5372 -2.3190 1.5782 43 1 3.1966 -3.1365 2.2585 44 1 2.5422 -5.0186 0.8632 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_10803936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:50 Heat of formation + Delta-G solvation = 50.304290 kcal Electronic energy + Delta-G solvation = -26901.769273 eV Core-core repulsion = 23107.042355 eV Total energy + Delta-G solvation = -3794.726918 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63506 -41.03135 -39.84838 -39.12163 -37.94529 -34.78755 -33.62103 -32.07376 -31.90475 -31.32859 -27.68328 -27.36870 -26.91044 -25.93765 -23.74698 -23.57779 -23.20188 -21.65704 -20.82286 -20.43960 -18.93218 -18.71458 -18.30729 -17.74015 -17.03975 -16.98517 -16.51205 -16.38282 -16.08426 -15.88019 -15.70596 -15.46392 -15.13113 -14.91310 -14.87845 -14.46439 -14.41676 -14.25733 -14.15547 -13.83249 -13.79887 -13.61401 -13.25074 -13.19062 -12.96307 -12.37922 -12.25285 -12.11396 -11.95564 -11.89387 -11.69664 -11.30272 -11.08635 -10.83977 -10.74832 -10.26347 -9.98182 -9.75680 -9.12000 -8.40392 -4.87565 0.21591 0.32492 0.37184 0.53163 1.15384 1.37331 1.53222 1.72249 1.73532 1.99743 2.27344 2.28766 2.72841 3.13564 3.22855 3.27021 3.55209 3.59173 3.71539 3.78525 3.90855 3.95649 3.99695 4.20603 4.27792 4.33861 4.41125 4.46531 4.48132 4.52669 4.53693 4.62121 4.64606 4.66009 4.75690 4.76283 4.84556 4.92708 5.02249 5.08714 5.17272 5.26360 5.41156 5.41666 5.53790 5.70966 5.93875 5.97577 6.11303 6.28276 6.41318 7.06045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.407 5.407 3 C -0.085 4.085 4 C 0.590 3.410 5 O -0.584 6.584 6 N -0.688 5.688 7 C 0.127 3.873 8 H 0.097 0.903 9 C -0.134 4.134 10 C -0.094 4.094 11 H 0.125 0.875 12 S -0.129 6.129 13 C -0.097 4.097 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.133 4.133 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.103 4.103 20 C -0.124 4.124 21 C -0.201 4.201 22 C 0.007 3.993 23 C -0.068 4.068 24 O -0.547 6.547 25 Si 0.817 3.183 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.418 0.582 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.131 0.869 42 H 0.386 0.614 43 H -0.289 1.289 44 H -0.298 1.298 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -2.125 0.298 6.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.080 5.080 3 C -0.198 4.198 4 C 0.380 3.620 5 O -0.466 6.466 6 N -0.339 5.339 7 C 0.020 3.980 8 H 0.115 0.885 9 C -0.175 4.175 10 C -0.223 4.223 11 H 0.143 0.857 12 S 0.118 5.882 13 C -0.210 4.210 14 C -0.164 4.164 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.128 4.128 18 C -0.144 4.144 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.224 4.224 22 C -0.111 4.111 23 C -0.175 4.175 24 O -0.355 6.355 25 Si 0.720 3.280 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.256 0.744 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.193 0.807 40 H 0.202 0.798 41 H 0.148 0.852 42 H 0.236 0.764 43 H -0.216 1.216 44 H -0.226 1.226 Dipole moment (debyes) X Y Z Total from point charges 4.721 -1.569 -0.356 4.987 hybrid contribution -0.755 -0.517 1.374 1.651 sum 3.966 -2.086 1.018 4.595 Atomic orbital electron populations 1.22469 0.76106 1.05495 1.04095 1.43909 1.07025 1.04689 1.52423 1.20173 0.91605 0.87084 1.20962 1.17210 0.85221 0.84351 0.75200 1.90786 1.18093 1.85318 1.52438 1.45132 1.10124 1.04765 1.73876 1.21721 0.99350 0.80086 0.96851 0.88540 1.23787 0.95004 1.01236 0.97502 1.25165 1.00293 0.96144 1.00700 0.85721 1.85595 1.75535 1.14293 1.12756 1.21912 1.03476 0.96951 0.98628 1.21378 1.02246 0.94935 0.97833 1.21407 0.97236 1.00487 0.93759 1.21544 1.00132 0.92762 1.00943 1.21413 0.98189 0.97884 0.95341 1.21010 1.00097 0.98446 0.94879 1.23134 0.97822 0.99745 0.93538 1.21722 0.94220 0.95876 1.03195 1.21024 0.95374 0.95591 1.10427 1.21464 0.91596 0.89238 1.08785 1.25279 0.93255 0.94274 1.04716 1.86566 1.30621 1.88517 1.29828 0.93297 0.82854 0.73217 0.78669 0.91346 0.87121 0.89776 0.74432 0.88058 0.90779 0.84828 0.83937 0.83917 0.83816 0.85327 0.87641 0.87226 0.80650 0.79798 0.85152 0.76422 1.21602 1.22610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.20 127.77 1.30 1.55 16 2 N -0.41 -1.67 3.16 -519.71 -1.64 -3.31 16 3 C -0.09 -0.29 6.89 40.35 0.28 -0.01 16 4 C 0.59 3.07 7.77 86.45 0.67 3.74 16 5 O -0.58 -7.51 14.21 -4.33 -0.06 -7.57 16 6 N -0.69 1.57 5.25 -444.01 -2.33 -0.76 16 7 C 0.13 -0.26 4.33 45.52 0.20 -0.06 16 8 H 0.10 0.22 7.45 -2.39 -0.02 0.20 16 9 C -0.13 0.27 7.38 31.21 0.23 0.50 16 10 C -0.09 0.37 2.90 31.21 0.09 0.46 16 11 H 0.12 -0.79 6.88 -2.39 -0.02 -0.81 16 12 S -0.13 -0.22 21.73 -56.49 -1.23 -1.45 16 13 C -0.10 -0.35 6.11 22.62 0.14 -0.22 16 14 C -0.14 -0.21 9.32 22.41 0.21 0.00 16 15 C -0.11 -0.03 10.04 22.25 0.22 0.19 16 16 C -0.13 -0.03 10.04 22.30 0.22 0.19 16 17 C -0.11 -0.14 10.04 22.25 0.22 0.09 16 18 C -0.12 -0.43 9.79 22.41 0.22 -0.21 16 19 C -0.10 0.58 7.41 31.12 0.23 0.81 16 20 C -0.12 0.32 10.35 22.57 0.23 0.55 16 21 C -0.20 0.68 9.37 22.01 0.21 0.88 16 22 C 0.01 0.00 6.14 41.34 0.25 0.25 16 23 C -0.07 0.17 2.99 71.23 0.21 0.39 16 24 O -0.55 0.01 10.12 -148.98 -1.51 -1.49 16 25 Si 0.82 -4.09 31.10 68.60 2.13 -1.96 16 26 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.11 0.10 5.26 -2.39 -0.01 0.09 16 28 H 0.08 0.64 6.11 -2.39 -0.01 0.63 16 29 H 0.42 -3.44 7.61 -92.71 -0.71 -4.15 16 30 H 0.10 -0.07 8.11 -2.39 -0.02 -0.09 16 31 H 0.07 -0.06 8.14 -2.38 -0.02 -0.07 16 32 H 0.13 -0.26 5.64 -2.91 -0.02 -0.27 16 33 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 34 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 35 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 36 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 37 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.11 -0.58 8.10 -2.39 -0.02 -0.60 16 39 H 0.18 -1.69 7.45 -2.91 -0.02 -1.71 16 40 H 0.18 -1.91 6.86 -2.91 -0.02 -1.93 16 41 H 0.13 -0.52 7.96 -2.38 -0.02 -0.54 16 42 H 0.39 -1.78 8.29 -74.06 -0.61 -2.39 16 43 H -0.29 -0.12 7.11 99.48 0.71 0.58 16 44 H -0.30 -0.69 7.11 99.48 0.71 0.01 16 Total: 0.00 -20.73 373.23 0.27 -20.46 By element: Atomic # 1 Polarization: -12.79 SS G_CDS: -0.23 Total: -13.02 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.15 Total: 9.10 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -3.97 Total: -4.07 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.57 Total: -9.06 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.13 Total: -1.96 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.23 Total: -1.45 kcal Total: -20.73 0.27 -20.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_10803936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.763 kcal (2) G-P(sol) polarization free energy of solvation -20.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds