Wall clock time and date at job start Sat Mar 6 2021 19:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 125.56272 * 2 1 4 4 C 1.50694 * 126.06647 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47040 * 123.89777 * 4 3 2 6 6 Si 1.86301 * 109.47367 * 243.89710 * 4 3 2 7 7 C 1.39838 * 107.86270 * 179.76183 * 3 2 1 8 8 C 1.50700 * 126.45507 * 180.26641 * 7 3 2 9 9 C 1.37869 * 107.08514 * 0.41815 * 7 3 2 10 10 C 1.46680 * 126.23008 * 179.84531 * 9 7 3 11 11 O 1.21691 * 120.00021 * 359.71553 * 10 9 7 12 12 N 1.34779 * 120.00042 * 179.71613 * 10 9 7 13 13 C 1.46493 * 120.00247 * 179.72402 * 12 10 9 14 14 H 1.09009 * 112.84733 * 25.61108 * 13 12 10 15 15 C 1.53780 * 113.61666 * 156.80142 * 13 12 10 16 16 C 1.53785 * 87.07689 * 89.11932 * 15 13 12 17 17 H 1.08997 * 113.61299 * 270.88252 * 16 15 13 18 18 S 1.81404 * 113.61196 * 140.06824 * 16 15 13 19 19 C 1.76205 * 102.99826 * 175.00041 * 18 16 15 20 20 C 1.38972 * 120.08142 * 359.72358 * 19 18 16 21 21 C 1.38078 * 119.92223 * 179.72363 * 20 19 18 22 22 C 1.38309 * 120.07707 * 0.52981 * 21 20 19 23 23 C 1.38309 * 120.15869 * 359.76752 * 22 21 20 24 24 C 1.38083 * 120.08033 * 359.95610 * 23 22 21 25 25 C 1.53778 * 113.61580 * 254.41480 * 13 12 10 26 26 N 1.35538 * 125.56673 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47141 * 275.31378 * 1 2 3 28 28 H 1.09003 * 109.47253 * 35.31539 * 1 2 3 29 29 H 1.09008 * 109.46653 * 155.31310 * 1 2 3 30 30 H 1.09004 * 109.47577 * 3.90108 * 4 3 2 31 31 H 0.96705 * 113.99826 * 180.02562 * 5 4 3 32 32 H 1.48501 * 110.00102 * 178.68320 * 6 4 3 33 33 H 1.48499 * 109.99809 * 300.00175 * 6 4 3 34 34 H 1.08998 * 109.47055 * 270.20870 * 8 7 3 35 35 H 1.08997 * 109.47278 * 30.20699 * 8 7 3 36 36 H 1.08998 * 109.47047 * 150.20650 * 8 7 3 37 37 H 0.96998 * 119.99502 * 0.02562 * 12 10 9 38 38 H 1.09000 * 113.62126 * 203.66772 * 15 13 12 39 39 H 1.09002 * 113.61719 * 334.57914 * 15 13 12 40 40 H 1.08007 * 120.03641 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.96719 * 180.27723 * 21 20 19 42 42 H 1.08000 * 119.92073 * 179.74405 * 22 21 20 43 43 H 1.08001 * 119.95504 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.03880 * 180.02562 * 24 23 22 45 45 H 1.08994 * 113.61802 * 25.43192 * 25 13 12 46 46 H 1.09001 * 113.61171 * 156.33751 * 25 13 12 47 47 H 0.97000 * 125.67554 * 359.96303 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5320 0.0005 5 8 2.3832 3.2206 1.1188 6 14 2.3569 3.3654 -1.5767 7 6 3.6269 0.6768 0.0055 8 6 4.8485 1.5593 0.0132 9 6 3.6122 -0.7018 -0.0008 10 6 4.7860 -1.5814 -0.0014 11 8 5.9049 -1.1028 -0.0012 12 7 4.6254 -2.9196 -0.0022 13 6 5.7977 -3.7980 -0.0089 14 1 6.6818 -3.3274 0.4216 15 6 5.5168 -5.2045 0.5458 16 6 5.1391 -5.6092 -0.8889 17 1 4.0867 -5.4508 -1.1245 18 16 5.7244 -7.2615 -1.3558 19 6 5.0248 -7.4922 -2.9564 20 6 4.2350 -6.4980 -3.5213 21 6 3.6931 -6.6798 -4.7782 22 6 3.9265 -7.8543 -5.4704 23 6 4.7069 -8.8485 -4.9087 24 6 5.2568 -8.6712 -3.6546 25 6 6.0571 -4.4688 -1.3682 26 7 2.2953 -1.1025 -0.0005 27 1 -0.3633 0.0952 1.0232 28 1 -0.3634 0.8386 -0.5941 29 1 -0.3633 -0.9338 -0.4293 30 1 0.7323 2.5538 0.0709 31 1 2.1195 4.1488 1.1828 32 1 1.8675 4.7672 -1.6027 33 1 3.8378 3.3425 -1.6844 34 1 5.1457 1.7771 -1.0126 35 1 4.6205 2.4909 0.5310 36 1 5.6628 1.0481 0.5267 37 1 3.7336 -3.3009 -0.0027 38 1 6.4055 -5.7109 0.9227 39 1 4.6804 -5.2396 1.2439 40 1 4.0487 -5.5824 -2.9795 41 1 3.0829 -5.9058 -5.2198 42 1 3.4980 -7.9956 -6.4516 43 1 4.8867 -9.7645 -5.4520 44 1 5.8664 -9.4478 -3.2168 45 1 5.6568 -3.9103 -2.2142 46 1 7.0933 -4.7744 -1.5136 47 1 1.9834 -2.0210 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_12297754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:57 Heat of formation + Delta-G solvation = 30.102086 kcal Electronic energy + Delta-G solvation = -28960.218321 eV Core-core repulsion = 25009.077751 eV Total energy + Delta-G solvation = -3951.140571 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64528 -41.02227 -39.88156 -39.03134 -37.74915 -34.66060 -33.67750 -32.90745 -32.08204 -31.93105 -29.23639 -27.89104 -27.04223 -26.75787 -25.81305 -23.73926 -23.51262 -22.68650 -20.87065 -20.78028 -19.88117 -19.39898 -18.74857 -18.37263 -17.83811 -17.02936 -16.86083 -16.39388 -16.36084 -16.06863 -15.84205 -15.48143 -15.34792 -15.21392 -14.91864 -14.59236 -14.45752 -14.24176 -14.21421 -13.99414 -13.84783 -13.77306 -13.73092 -13.66637 -13.25443 -13.21273 -13.07288 -12.53828 -12.36800 -12.31404 -12.17039 -12.01468 -11.75819 -11.68654 -11.13930 -10.94786 -10.76793 -10.64304 -10.25586 -9.99411 -9.42200 -8.95419 -8.39902 -4.85855 0.20984 0.36118 0.41976 0.48373 1.26749 1.32358 1.57529 1.73337 1.88948 1.99828 2.16100 2.36703 2.71555 3.11206 3.13300 3.44929 3.52622 3.62331 3.74765 3.77838 3.84583 3.93049 4.01793 4.12331 4.13689 4.28957 4.32722 4.39844 4.43351 4.47837 4.48482 4.49511 4.53461 4.58986 4.67543 4.72489 4.75561 4.79892 4.83888 4.97272 5.01120 5.10358 5.24619 5.32862 5.38238 5.38291 5.47208 5.51580 5.73787 5.89300 5.95435 6.26683 6.41544 6.58188 7.13080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.081 3.919 3 C -0.169 4.169 4 C -0.031 4.031 5 O -0.533 6.533 6 Si 0.670 3.330 7 C -0.038 4.038 8 C -0.098 4.098 9 C -0.070 4.070 10 C 0.596 3.404 11 O -0.518 6.518 12 N -0.719 5.719 13 C 0.128 3.872 14 H 0.116 0.884 15 C -0.115 4.115 16 C -0.108 4.108 17 H 0.109 0.891 18 S -0.103 6.103 19 C -0.083 4.083 20 C -0.133 4.133 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.100 4.100 24 C -0.102 4.102 25 C -0.136 4.136 26 N -0.537 5.537 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.376 0.624 32 H -0.263 1.263 33 H -0.244 1.244 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.393 0.607 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 -1.820 -1.930 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 C -0.175 4.175 4 C -0.141 4.141 5 O -0.340 6.340 6 Si 0.570 3.430 7 C -0.046 4.046 8 C -0.155 4.155 9 C -0.180 4.180 10 C 0.385 3.615 11 O -0.393 6.393 12 N -0.370 5.370 13 C 0.021 3.979 14 H 0.134 0.866 15 C -0.154 4.154 16 C -0.237 4.237 17 H 0.127 0.873 18 S 0.144 5.856 19 C -0.196 4.196 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.177 4.177 26 N -0.135 5.135 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.223 0.777 32 H -0.188 1.188 33 H -0.167 1.167 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.305 -2.296 -1.421 5.082 hybrid contribution -1.684 0.672 0.104 1.816 sum -5.989 -1.624 -1.317 6.343 Atomic orbital electron populations 1.20508 0.87189 1.03901 1.03682 1.20195 0.93509 0.85384 1.04599 1.18346 0.92346 0.92568 1.14242 1.23898 0.99186 0.92619 0.98404 1.86630 1.74070 1.27229 1.46034 0.95081 0.83772 0.80908 0.83262 1.19747 0.94927 0.90788 0.99171 1.20523 0.94370 0.98358 1.02278 1.19951 0.82692 0.93884 1.21507 1.16984 0.87649 0.80964 0.75921 1.90850 1.24167 1.74776 1.49485 1.45549 1.08918 1.05693 1.76866 1.21769 0.89918 0.89396 0.96799 0.86648 1.23174 1.03774 0.94720 0.93777 1.25134 1.02829 0.94537 1.01181 0.87324 1.85565 1.64708 1.20972 1.14337 1.21750 1.01562 0.97904 0.98353 1.21147 0.99270 0.98451 0.96752 1.21097 0.99086 0.97654 0.94233 1.21249 0.99102 0.93875 1.00298 1.21155 0.96739 0.99262 0.94839 1.20812 1.00738 0.96056 0.94967 1.23825 1.00814 0.94861 0.98199 1.41742 1.05315 1.08202 1.58211 0.90127 0.89246 0.91112 0.91372 0.77662 1.18760 1.16714 0.91422 0.91020 0.90091 0.77319 0.87302 0.89529 0.86106 0.85690 0.85628 0.85334 0.85454 0.90244 0.87440 0.74765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.37 9.90 36.00 0.36 0.73 16 2 C 0.08 -0.06 7.13 -81.95 -0.58 -0.65 16 3 C -0.17 -0.26 4.50 -105.02 -0.47 -0.73 16 4 C -0.03 -0.01 2.77 36.00 0.10 0.09 16 5 O -0.53 -0.82 11.63 -35.23 -0.41 -1.23 16 6 Si 0.67 -0.07 31.65 -169.99 -5.38 -5.45 16 7 C -0.04 -0.13 5.86 -104.16 -0.61 -0.74 16 8 C -0.10 -0.43 8.13 36.01 0.29 -0.14 16 9 C -0.07 -0.13 7.06 -81.98 -0.58 -0.71 16 10 C 0.60 1.46 7.79 -12.85 -0.10 1.36 16 11 O -0.52 -3.14 14.42 5.20 0.07 -3.06 16 12 N -0.72 0.84 5.26 -54.32 -0.29 0.56 16 13 C 0.13 -0.14 4.29 -67.12 -0.29 -0.43 16 14 H 0.12 0.06 7.50 -51.92 -0.39 -0.33 16 15 C -0.11 0.29 7.41 -25.92 -0.19 0.09 16 16 C -0.11 0.19 2.90 -25.78 -0.07 0.12 16 17 H 0.11 -0.29 6.85 -51.93 -0.36 -0.65 16 18 S -0.10 -0.06 21.73 -107.50 -2.34 -2.40 16 19 C -0.08 -0.13 6.11 -39.04 -0.24 -0.36 16 20 C -0.13 -0.09 9.32 -39.37 -0.37 -0.45 16 21 C -0.10 -0.02 10.04 -39.61 -0.40 -0.42 16 22 C -0.12 -0.02 10.04 -39.53 -0.40 -0.42 16 23 C -0.10 -0.05 10.04 -39.61 -0.40 -0.44 16 24 C -0.10 -0.14 9.79 -39.37 -0.39 -0.52 16 25 C -0.14 0.16 7.40 -25.78 -0.19 -0.04 16 26 N -0.54 0.75 5.99 -5.70 -0.03 0.71 16 27 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 28 H 0.09 -0.44 7.41 -51.93 -0.38 -0.82 16 29 H 0.07 -0.38 8.14 -51.92 -0.42 -0.80 16 30 H 0.07 -0.14 6.75 -51.93 -0.35 -0.49 16 31 H 0.38 -0.91 8.74 45.56 0.40 -0.51 16 32 H -0.26 -0.43 7.11 56.52 0.40 -0.02 16 33 H -0.24 -0.76 5.94 56.52 0.34 -0.43 16 34 H 0.07 0.29 7.45 -51.93 -0.39 -0.09 16 35 H 0.07 0.32 6.69 -51.93 -0.35 -0.03 16 36 H 0.08 0.45 6.49 -51.93 -0.34 0.11 16 37 H 0.39 -1.55 7.83 -40.82 -0.32 -1.87 16 38 H 0.11 -0.26 8.10 -51.93 -0.42 -0.68 16 39 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 40 H 0.12 -0.10 5.64 -52.48 -0.30 -0.40 16 41 H 0.13 -0.21 8.06 -52.48 -0.42 -0.63 16 42 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 43 H 0.13 -0.19 8.06 -52.49 -0.42 -0.61 16 44 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 45 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 46 H 0.11 -0.08 8.11 -51.93 -0.42 -0.50 16 47 H 0.41 -1.98 8.19 -40.82 -0.33 -2.31 16 LS Contribution 394.77 15.07 5.95 5.95 Total: 0.00 -9.03 394.77 -13.54 -22.57 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -6.59 Total: -13.99 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.53 Total: -3.66 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -0.32 Total: 1.27 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.33 Total: -4.29 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: -5.38 Total: -5.45 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.34 Total: -2.40 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -9.03 -13.54 -22.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12297754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.674 kcal (2) G-P(sol) polarization free energy of solvation -9.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds