Wall clock time and date at job start Sat Mar 6 2021 19:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35457 * 125.56272 * 2 1 4 4 C 1.50694 * 126.06647 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.47040 * 123.89777 * 4 3 2 6 6 Si 1.86301 * 109.47367 * 243.89710 * 4 3 2 7 7 C 1.39838 * 107.86270 * 179.76183 * 3 2 1 8 8 C 1.50700 * 126.45507 * 180.26641 * 7 3 2 9 9 C 1.37869 * 107.08514 * 0.41815 * 7 3 2 10 10 C 1.46680 * 126.23008 * 179.84531 * 9 7 3 11 11 O 1.21691 * 120.00021 * 359.71553 * 10 9 7 12 12 N 1.34779 * 120.00042 * 179.71613 * 10 9 7 13 13 C 1.46493 * 120.00247 * 179.72402 * 12 10 9 14 14 H 1.09009 * 112.84733 * 25.61108 * 13 12 10 15 15 C 1.53780 * 113.61666 * 156.80142 * 13 12 10 16 16 C 1.53785 * 87.07689 * 89.11932 * 15 13 12 17 17 H 1.08997 * 113.61299 * 270.88252 * 16 15 13 18 18 S 1.81404 * 113.61196 * 140.06824 * 16 15 13 19 19 C 1.76205 * 102.99826 * 175.00041 * 18 16 15 20 20 C 1.38972 * 120.08142 * 359.72358 * 19 18 16 21 21 C 1.38078 * 119.92223 * 179.72363 * 20 19 18 22 22 C 1.38309 * 120.07707 * 0.52981 * 21 20 19 23 23 C 1.38309 * 120.15869 * 359.76752 * 22 21 20 24 24 C 1.38083 * 120.08033 * 359.95610 * 23 22 21 25 25 C 1.53778 * 113.61580 * 254.41480 * 13 12 10 26 26 N 1.35538 * 125.56673 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47141 * 275.31378 * 1 2 3 28 28 H 1.09003 * 109.47253 * 35.31539 * 1 2 3 29 29 H 1.09008 * 109.46653 * 155.31310 * 1 2 3 30 30 H 1.09004 * 109.47577 * 3.90108 * 4 3 2 31 31 H 0.96705 * 113.99826 * 180.02562 * 5 4 3 32 32 H 1.48501 * 110.00102 * 178.68320 * 6 4 3 33 33 H 1.48499 * 109.99809 * 300.00175 * 6 4 3 34 34 H 1.08998 * 109.47055 * 270.20870 * 8 7 3 35 35 H 1.08997 * 109.47278 * 30.20699 * 8 7 3 36 36 H 1.08998 * 109.47047 * 150.20650 * 8 7 3 37 37 H 0.96998 * 119.99502 * 0.02562 * 12 10 9 38 38 H 1.09000 * 113.62126 * 203.66772 * 15 13 12 39 39 H 1.09002 * 113.61719 * 334.57914 * 15 13 12 40 40 H 1.08007 * 120.03641 * 359.97438 * 20 19 18 41 41 H 1.08003 * 119.96719 * 180.27723 * 21 20 19 42 42 H 1.08000 * 119.92073 * 179.74405 * 22 21 20 43 43 H 1.08001 * 119.95504 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.03880 * 180.02562 * 24 23 22 45 45 H 1.08994 * 113.61802 * 25.43192 * 25 13 12 46 46 H 1.09001 * 113.61171 * 156.33751 * 25 13 12 47 47 H 0.97000 * 125.67554 * 359.96303 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5320 0.0005 5 8 2.3832 3.2206 1.1188 6 14 2.3569 3.3654 -1.5767 7 6 3.6269 0.6768 0.0055 8 6 4.8485 1.5593 0.0132 9 6 3.6122 -0.7018 -0.0008 10 6 4.7860 -1.5814 -0.0014 11 8 5.9049 -1.1028 -0.0012 12 7 4.6254 -2.9196 -0.0022 13 6 5.7977 -3.7980 -0.0089 14 1 6.6818 -3.3274 0.4216 15 6 5.5168 -5.2045 0.5458 16 6 5.1391 -5.6092 -0.8889 17 1 4.0867 -5.4508 -1.1245 18 16 5.7244 -7.2615 -1.3558 19 6 5.0248 -7.4922 -2.9564 20 6 4.2350 -6.4980 -3.5213 21 6 3.6931 -6.6798 -4.7782 22 6 3.9265 -7.8543 -5.4704 23 6 4.7069 -8.8485 -4.9087 24 6 5.2568 -8.6712 -3.6546 25 6 6.0571 -4.4688 -1.3682 26 7 2.2953 -1.1025 -0.0005 27 1 -0.3633 0.0952 1.0232 28 1 -0.3634 0.8386 -0.5941 29 1 -0.3633 -0.9338 -0.4293 30 1 0.7323 2.5538 0.0709 31 1 2.1195 4.1488 1.1828 32 1 1.8675 4.7672 -1.6027 33 1 3.8378 3.3425 -1.6844 34 1 5.1457 1.7771 -1.0126 35 1 4.6205 2.4909 0.5310 36 1 5.6628 1.0481 0.5267 37 1 3.7336 -3.3009 -0.0027 38 1 6.4055 -5.7109 0.9227 39 1 4.6804 -5.2396 1.2439 40 1 4.0487 -5.5824 -2.9795 41 1 3.0829 -5.9058 -5.2198 42 1 3.4980 -7.9956 -6.4516 43 1 4.8867 -9.7645 -5.4520 44 1 5.8664 -9.4478 -3.2168 45 1 5.6568 -3.9103 -2.2142 46 1 7.0933 -4.7744 -1.5136 47 1 1.9834 -2.0210 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12297754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:44:56 Heat of formation + Delta-G solvation = 32.757586 kcal Electronic energy + Delta-G solvation = -28960.103170 eV Core-core repulsion = 25009.077751 eV Total energy + Delta-G solvation = -3951.025420 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66908 -41.03749 -39.85952 -39.13269 -37.78464 -34.74686 -33.76354 -32.82631 -32.06106 -31.91244 -29.24124 -27.93022 -26.94377 -26.79130 -25.77411 -23.72725 -23.49504 -22.72082 -20.85542 -20.82310 -19.90924 -19.40358 -18.72346 -18.40431 -17.81417 -17.00446 -16.88375 -16.44919 -16.37790 -16.08031 -15.83757 -15.45254 -15.34598 -15.22367 -14.88602 -14.62225 -14.42420 -14.31396 -14.22917 -14.12758 -13.86312 -13.78498 -13.64164 -13.54395 -13.25807 -13.20279 -13.10354 -12.51898 -12.49323 -12.26836 -12.12655 -11.92971 -11.84326 -11.71717 -11.18711 -11.08111 -10.76477 -10.66963 -10.30964 -9.99276 -9.49978 -8.95797 -8.42273 -4.88543 0.20511 0.33235 0.36215 0.50783 1.24182 1.35394 1.55945 1.69506 1.85743 2.07843 2.11713 2.24142 2.71876 3.19933 3.23626 3.52202 3.59760 3.73649 3.78095 3.89331 3.91751 3.97996 4.05930 4.18711 4.19806 4.37503 4.42965 4.45677 4.47469 4.51473 4.59871 4.60770 4.63579 4.68957 4.71423 4.75130 4.81815 4.85827 4.88326 4.96810 5.01105 5.07096 5.21524 5.25186 5.29006 5.38764 5.40717 5.52930 5.68862 5.84569 5.92948 6.33235 6.53411 6.73358 7.03939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.102 3.898 3 C -0.193 4.193 4 C -0.032 4.032 5 O -0.556 6.556 6 Si 0.734 3.266 7 C -0.072 4.072 8 C -0.089 4.089 9 C -0.080 4.080 10 C 0.593 3.407 11 O -0.564 6.564 12 N -0.700 5.700 13 C 0.126 3.874 14 H 0.096 0.904 15 C -0.103 4.103 16 C -0.094 4.094 17 H 0.124 0.876 18 S -0.129 6.129 19 C -0.097 4.097 20 C -0.140 4.140 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.109 4.109 24 C -0.121 4.121 25 C -0.134 4.134 26 N -0.519 5.519 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.391 0.609 32 H -0.284 1.284 33 H -0.299 1.299 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 -2.756 -2.059 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.019 4.019 3 C -0.199 4.199 4 C -0.142 4.142 5 O -0.366 6.366 6 Si 0.640 3.360 7 C -0.081 4.081 8 C -0.146 4.146 9 C -0.192 4.192 10 C 0.383 3.617 11 O -0.443 6.443 12 N -0.351 5.351 13 C 0.019 3.981 14 H 0.114 0.886 15 C -0.142 4.142 16 C -0.222 4.222 17 H 0.142 0.858 18 S 0.118 5.882 19 C -0.210 4.210 20 C -0.164 4.164 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.175 4.175 26 N -0.117 5.117 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.240 0.760 32 H -0.211 1.211 33 H -0.226 1.226 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.146 0.854 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -7.470 -3.292 -1.553 8.309 hybrid contribution -0.671 0.988 0.122 1.201 sum -8.141 -2.303 -1.432 8.581 Atomic orbital electron populations 1.20700 0.84244 1.05872 1.04568 1.20701 0.94983 0.84522 1.01648 1.18572 0.91771 0.93992 1.15566 1.23991 1.00872 0.91857 0.97493 1.86598 1.74812 1.28620 1.46526 0.94477 0.79885 0.79239 0.82406 1.19861 0.95382 0.91666 1.01192 1.20333 0.94869 0.98216 1.01183 1.19761 0.83818 0.93363 1.22232 1.17151 0.87199 0.81937 0.75443 1.90828 1.25880 1.75753 1.51845 1.45341 1.09855 1.04521 1.75391 1.21728 0.89446 0.89835 0.97123 0.88575 1.23135 1.04466 0.92944 0.93700 1.25155 1.03261 0.92527 1.01296 0.85759 1.85625 1.65331 1.22777 1.14513 1.21905 1.02088 0.98347 0.98658 1.21364 0.99129 0.98725 0.97183 1.21412 0.99064 0.98198 0.94128 1.21556 0.98887 0.93775 1.01108 1.21418 0.96604 1.00114 0.94685 1.21004 1.01395 0.96399 0.95662 1.23774 1.00751 0.95108 0.97886 1.41690 1.03932 1.09282 1.56843 0.89520 0.87681 0.88912 0.88193 0.75972 1.21103 1.22608 0.92530 0.91739 0.92003 0.75332 0.87268 0.87775 0.84862 0.83803 0.83851 0.83828 0.85392 0.90708 0.88122 0.72595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.10 9.90 71.23 0.71 1.81 16 2 C 0.10 -0.36 7.13 41.34 0.29 -0.06 16 3 C -0.19 -0.53 4.50 -20.12 -0.09 -0.62 16 4 C -0.03 0.01 2.77 71.23 0.20 0.20 16 5 O -0.56 -1.88 11.63 -148.98 -1.73 -3.62 16 6 Si 0.73 0.45 31.65 68.60 2.17 2.62 16 7 C -0.07 -0.61 5.86 -19.56 -0.11 -0.72 16 8 C -0.09 -1.09 8.13 71.24 0.58 -0.51 16 9 C -0.08 -0.35 7.06 40.35 0.28 -0.06 16 10 C 0.59 3.62 7.79 86.45 0.67 4.30 16 11 O -0.56 -8.44 14.42 -4.32 -0.06 -8.50 16 12 N -0.70 1.73 5.26 -444.00 -2.34 -0.60 16 13 C 0.13 -0.22 4.29 45.52 0.20 -0.02 16 14 H 0.10 0.28 7.50 -2.38 -0.02 0.26 16 15 C -0.10 0.58 7.41 31.12 0.23 0.81 16 16 C -0.09 0.39 2.90 31.21 0.09 0.48 16 17 H 0.12 -0.89 6.85 -2.39 -0.02 -0.90 16 18 S -0.13 -0.20 21.73 -56.49 -1.23 -1.43 16 19 C -0.10 -0.32 6.11 22.62 0.14 -0.18 16 20 C -0.14 -0.12 9.32 22.41 0.21 0.09 16 21 C -0.11 0.05 10.04 22.25 0.22 0.27 16 22 C -0.13 0.04 10.04 22.30 0.22 0.27 16 23 C -0.11 -0.09 10.04 22.25 0.22 0.13 16 24 C -0.12 -0.40 9.79 22.41 0.22 -0.18 16 25 C -0.13 0.24 7.40 31.21 0.23 0.47 16 26 N -0.52 2.27 5.99 -171.93 -1.03 1.24 16 27 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.10 -1.45 7.41 -2.39 -0.02 -1.47 16 29 H 0.09 -1.40 8.14 -2.38 -0.02 -1.42 16 30 H 0.10 -0.66 6.75 -2.38 -0.02 -0.68 16 31 H 0.39 -1.82 8.74 -74.05 -0.65 -2.47 16 32 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 33 H -0.30 -2.89 5.94 99.48 0.59 -2.30 16 34 H 0.06 0.74 7.45 -2.39 -0.02 0.72 16 35 H 0.06 0.80 6.69 -2.39 -0.02 0.78 16 36 H 0.06 0.95 6.49 -2.39 -0.02 0.93 16 37 H 0.41 -3.89 7.83 -92.71 -0.73 -4.61 16 38 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 39 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.13 -0.37 5.64 -2.91 -0.02 -0.38 16 41 H 0.14 -0.71 8.06 -2.91 -0.02 -0.73 16 42 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 43 H 0.14 -0.46 8.06 -2.91 -0.02 -0.49 16 44 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 45 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.10 -0.02 8.11 -2.39 -0.02 -0.04 16 47 H 0.43 -5.29 8.19 -92.71 -0.76 -6.05 16 Total: 0.00 -25.17 394.77 -0.88 -26.05 By element: Atomic # 1 Polarization: -21.06 SS G_CDS: -1.18 Total: -22.24 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.51 Total: 6.47 kcal Atomic # 7 Polarization: 4.00 SS G_CDS: -3.37 Total: 0.64 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.80 Total: -12.11 kcal Atomic # 14 Polarization: 0.45 SS G_CDS: 2.17 Total: 2.62 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.23 Total: -1.43 kcal Total: -25.17 -0.88 -26.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12297754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.811 kcal (2) G-P(sol) polarization free energy of solvation -25.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds