Wall clock time and date at job start Sat Mar 6 2021 19:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47162 * 2 1 4 4 C 1.50696 * 109.47291 * 239.99620 * 2 1 3 5 5 C 1.38236 * 119.99759 * 299.99930 * 4 2 1 6 6 C 1.38240 * 119.99502 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00486 * 359.95537 * 6 5 4 8 8 C 1.50696 * 120.00229 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47045 * 89.99991 * 8 7 6 10 10 O 1.21284 * 120.00148 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99955 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99818 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85140 * 23.80794 * 12 11 9 14 14 C 1.53778 * 113.61331 * 155.00289 * 12 11 9 15 15 C 1.53778 * 87.08139 * 89.11620 * 14 12 11 16 16 H 1.08994 * 113.61750 * 270.79699 * 15 14 12 17 17 S 1.81404 * 113.61410 * 139.98306 * 15 14 12 18 18 C 1.76196 * 103.00225 * 176.53160 * 17 15 14 19 19 C 1.38968 * 120.08305 * 179.97438 * 18 17 15 20 20 C 1.38085 * 119.91937 * 179.97438 * 19 18 17 21 21 C 1.38302 * 120.08110 * 0.02562 * 20 19 18 22 22 C 1.38293 * 120.16127 * 359.97438 * 21 20 19 23 23 C 1.38088 * 120.08132 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.17371 * 25.39321 * 15 14 12 25 25 C 1.38232 * 119.99471 * 0.27600 * 7 6 5 26 26 C 1.38228 * 120.00097 * 119.98228 * 4 2 1 27 27 H 0.96706 * 113.99805 * 60.00687 * 1 2 3 28 28 H 1.09004 * 109.46877 * 119.99198 * 2 1 3 29 29 H 1.48496 * 110.00503 * 59.99442 * 3 2 1 30 30 H 1.48496 * 110.00177 * 181.31823 * 3 2 1 31 31 H 1.07996 * 120.00406 * 359.97438 * 5 4 2 32 32 H 1.08009 * 119.99391 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46751 * 330.00454 * 8 7 6 34 34 H 1.08997 * 109.46996 * 210.00064 * 8 7 6 35 35 H 0.96995 * 120.00421 * 0.02562 * 11 9 8 36 36 H 1.09000 * 113.61541 * 334.57070 * 14 12 11 37 37 H 1.09004 * 113.69560 * 203.67583 * 14 12 11 38 38 H 1.08001 * 120.04118 * 359.95359 * 19 18 17 39 39 H 1.08010 * 119.95749 * 179.72362 * 20 19 18 40 40 H 1.07996 * 119.91798 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.96290 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.04189 * 180.02562 * 23 22 21 43 43 H 1.08994 * 113.61350 * 89.15840 * 24 15 14 44 44 H 1.08999 * 113.61311 * 220.06278 * 24 15 14 45 45 H 1.08000 * 119.99866 * 179.71797 * 25 7 6 46 46 H 1.08009 * 120.00255 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4490 6 6 2.0587 -2.6858 -2.5774 7 6 2.8531 -2.0140 -3.4876 8 6 3.3555 -2.7244 -4.7180 9 6 2.3626 -2.5516 -5.8384 10 8 1.3473 -1.9138 -5.6559 11 7 2.6035 -3.1048 -7.0435 12 6 1.6385 -2.9363 -8.1329 13 1 1.0117 -2.0530 -8.0103 14 6 2.2624 -3.0593 -9.5330 15 6 1.9767 -4.5675 -9.4419 16 1 2.7876 -5.1391 -8.9906 17 16 1.3861 -5.2905 -10.9972 18 6 1.2514 -7.0045 -10.6118 19 6 0.8170 -7.9038 -11.5781 20 6 0.7132 -9.2464 -11.2725 21 6 1.0404 -9.6964 -10.0063 22 6 1.4730 -8.8044 -9.0421 23 6 1.5793 -7.4603 -9.3405 24 6 0.8481 -4.2169 -8.4579 25 6 3.1909 -0.6919 -3.2665 26 6 2.7258 -0.0387 -2.1405 27 1 -0.3933 0.4416 -0.7652 28 1 1.7923 -0.5137 0.8901 29 1 1.5614 2.4680 1.2084 30 1 3.5345 1.7703 -0.0321 31 1 0.9769 -2.5589 -0.7379 32 1 1.7981 -3.7200 -2.7480 33 1 3.4768 -3.7856 -4.5006 34 1 4.3155 -2.3022 -5.0148 35 1 3.4156 -3.6146 -7.1896 36 1 3.3248 -2.8171 -9.5604 37 1 1.6927 -2.5532 -10.3125 38 1 0.5606 -7.5530 -12.5669 39 1 0.3715 -9.9452 -12.0217 40 1 0.9579 -10.7469 -9.7700 41 1 1.7281 -9.1594 -8.0545 42 1 1.9176 -6.7643 -8.5871 43 1 -0.1100 -4.0277 -8.9418 44 1 0.7704 -4.9079 -7.6185 45 1 3.8153 -0.1683 -3.9752 46 1 2.9861 0.9956 -1.9700 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_12335836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:07 Heat of formation + Delta-G solvation = 14.757435 kcal Electronic energy + Delta-G solvation = -27313.645714 eV Core-core repulsion = 23454.577139 eV Total energy + Delta-G solvation = -3859.068575 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48587 -40.53640 -39.87429 -39.20068 -37.56533 -34.47898 -33.90184 -32.08109 -31.93125 -31.92262 -29.87006 -27.06115 -26.78560 -25.51764 -23.80580 -23.72784 -23.48811 -22.50275 -21.45479 -20.75216 -18.77689 -18.51453 -18.35049 -17.64331 -17.28861 -16.94046 -16.65224 -16.39645 -16.32729 -15.98557 -15.84081 -15.76692 -15.50580 -14.95778 -14.86597 -14.67259 -14.51424 -14.45711 -14.21188 -13.97974 -13.87226 -13.76267 -13.37863 -13.20861 -13.11902 -12.82168 -12.30489 -12.22117 -12.16702 -12.00391 -11.92688 -11.73688 -11.66175 -11.12728 -10.97610 -10.75812 -10.40363 -10.20467 -9.98468 -9.85374 -9.60242 -8.39122 -5.00134 0.21900 0.24561 0.36963 0.47770 0.49461 1.32655 1.33496 1.54983 1.64530 1.95767 1.98967 2.72442 2.77542 3.12796 3.15474 3.46929 3.51563 3.55977 3.64943 3.74488 3.83315 3.85363 3.87322 3.93957 4.02380 4.13118 4.20865 4.30728 4.32717 4.40698 4.46361 4.48395 4.49928 4.53693 4.56027 4.61713 4.69136 4.73077 4.74849 4.84981 4.98096 4.99553 5.07895 5.25496 5.37399 5.39128 5.40067 5.52420 5.55838 5.58315 5.90134 6.00711 6.33199 6.61322 7.13105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.068 4.068 3 Si 0.688 3.312 4 C -0.118 4.118 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.065 4.065 8 C -0.103 4.103 9 C 0.518 3.482 10 O -0.521 6.521 11 N -0.718 5.718 12 C 0.126 3.874 13 H 0.113 0.887 14 C -0.115 4.115 15 C -0.107 4.107 16 H 0.110 0.890 17 S -0.105 6.105 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.099 4.099 26 C -0.115 4.115 27 H 0.380 0.620 28 H 0.113 0.887 29 H -0.255 1.255 30 H -0.258 1.258 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.401 0.599 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.124 0.876 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -1.277 -2.623 4.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.591 3.409 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.065 4.065 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.019 3.981 13 H 0.131 0.869 14 C -0.155 4.155 15 C -0.236 4.236 16 H 0.128 0.872 17 S 0.142 5.858 18 C -0.195 4.195 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.178 4.178 25 C -0.117 4.117 26 C -0.133 4.133 27 H 0.227 0.773 28 H 0.130 0.870 29 H -0.180 1.180 30 H -0.183 1.183 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.236 0.764 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.142 0.858 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.978 0.181 -2.546 3.922 hybrid contribution 0.852 -1.855 1.101 2.319 sum 3.829 -1.674 -1.445 4.422 Atomic orbital electron populations 1.86491 1.17066 1.81755 1.49297 1.25050 0.85307 1.10080 0.97502 0.94613 0.80883 0.78333 0.87119 1.20333 0.99169 0.95308 0.97033 1.20957 0.98704 0.93857 0.97367 1.21012 0.97022 0.99974 0.94137 1.19243 0.98303 0.94285 0.94686 1.20689 0.98862 1.02994 0.91755 1.20592 0.87403 0.78562 0.83016 1.90769 1.27584 1.39290 1.81884 1.45717 1.24274 1.55955 1.11118 1.21803 0.91313 0.99376 0.85613 0.86863 1.23166 1.03048 0.92032 0.97226 1.25080 1.02226 0.99549 0.96748 0.87177 1.85562 1.82569 0.98697 1.18962 1.21747 1.03612 0.97120 0.97065 1.20812 1.00363 0.92756 0.98648 1.21153 0.98797 0.95116 0.96951 1.21240 0.99772 0.99986 0.93531 1.21097 0.98653 0.92829 0.99517 1.21160 1.02584 0.96591 0.95257 1.23804 0.97762 0.97836 0.98381 1.20906 0.99887 0.93801 0.97144 1.20946 0.98426 0.99234 0.94681 0.77263 0.86981 1.17997 1.18331 0.85610 0.86048 0.87718 0.87592 0.76449 0.89436 0.87479 0.85465 0.85351 0.85653 0.85701 0.86036 0.87605 0.90349 0.85775 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.73 12.77 -35.23 -0.45 -1.18 16 2 C -0.07 -0.05 2.82 36.00 0.10 0.05 16 3 Si 0.69 -0.20 29.79 -169.99 -5.06 -5.26 16 4 C -0.12 -0.14 5.39 -104.63 -0.56 -0.70 16 5 C -0.09 -0.14 9.61 -39.58 -0.38 -0.52 16 6 C -0.10 -0.10 9.70 -39.58 -0.38 -0.49 16 7 C -0.06 -0.02 4.37 -104.63 -0.46 -0.48 16 8 C -0.10 0.25 5.83 -29.04 -0.17 0.08 16 9 C 0.52 -0.11 7.82 -10.99 -0.09 -0.19 16 10 O -0.52 -2.24 15.63 5.55 0.09 -2.16 16 11 N -0.72 1.95 5.26 -52.93 -0.28 1.68 16 12 C 0.13 -0.24 4.33 -67.02 -0.29 -0.53 16 13 H 0.11 -0.01 7.46 -51.93 -0.39 -0.40 16 14 C -0.12 0.34 7.42 -25.92 -0.19 0.15 16 15 C -0.11 0.23 2.86 -25.92 -0.07 0.15 16 16 H 0.11 -0.32 6.96 -51.93 -0.36 -0.68 16 17 S -0.10 -0.05 21.72 -107.50 -2.33 -2.39 16 18 C -0.08 -0.12 6.11 -39.04 -0.24 -0.36 16 19 C -0.10 -0.13 9.79 -39.37 -0.39 -0.52 16 20 C -0.10 -0.05 10.04 -39.61 -0.40 -0.44 16 21 C -0.12 -0.02 10.04 -39.54 -0.40 -0.42 16 22 C -0.10 -0.02 10.04 -39.62 -0.40 -0.42 16 23 C -0.13 -0.07 9.33 -39.36 -0.37 -0.44 16 24 C -0.14 0.22 7.30 -25.83 -0.19 0.04 16 25 C -0.10 -0.04 9.70 -39.58 -0.38 -0.43 16 26 C -0.12 -0.07 8.67 -39.58 -0.34 -0.41 16 27 H 0.38 -0.82 8.70 45.56 0.40 -0.42 16 28 H 0.11 0.10 7.96 -51.93 -0.41 -0.31 16 29 H -0.25 -0.73 7.11 56.52 0.40 -0.32 16 30 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 31 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 32 H 0.12 -0.06 8.06 -52.48 -0.42 -0.48 16 33 H 0.10 -0.46 8.09 -51.93 -0.42 -0.88 16 34 H 0.11 -0.48 8.08 -51.93 -0.42 -0.90 16 35 H 0.40 -2.15 8.70 -40.82 -0.36 -2.51 16 36 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 37 H 0.11 -0.30 8.10 -51.93 -0.42 -0.72 16 38 H 0.13 0.04 8.06 -52.49 -0.42 -0.38 16 39 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 40 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 41 H 0.13 -0.21 8.06 -52.48 -0.42 -0.64 16 42 H 0.12 -0.13 5.58 -52.48 -0.29 -0.42 16 43 H 0.11 -0.11 8.10 -51.93 -0.42 -0.53 16 44 H 0.08 -0.09 8.11 -51.93 -0.42 -0.51 16 45 H 0.12 -0.17 8.06 -52.49 -0.42 -0.60 16 46 H 0.13 -0.15 4.89 -52.48 -0.26 -0.40 16 LS Contribution 395.83 15.07 5.97 5.97 Total: 0.00 -8.62 395.83 -14.02 -22.65 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: -6.35 Total: -13.43 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -5.60 Total: -5.88 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -0.28 Total: 1.68 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.36 Total: -3.33 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.06 Total: -5.26 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.33 Total: -2.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -8.62 -14.02 -22.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12335836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -8.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds