Wall clock time and date at job start Sat Mar 6 2021 19:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47162 * 2 1 4 4 C 1.50696 * 109.47291 * 239.99620 * 2 1 3 5 5 C 1.38236 * 119.99759 * 299.99930 * 4 2 1 6 6 C 1.38240 * 119.99502 * 180.02562 * 5 4 2 7 7 C 1.38234 * 120.00486 * 359.95537 * 6 5 4 8 8 C 1.50696 * 120.00229 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47045 * 89.99991 * 8 7 6 10 10 O 1.21284 * 120.00148 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99955 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99818 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85140 * 23.80794 * 12 11 9 14 14 C 1.53778 * 113.61331 * 155.00289 * 12 11 9 15 15 C 1.53778 * 87.08139 * 89.11620 * 14 12 11 16 16 H 1.08994 * 113.61750 * 270.79699 * 15 14 12 17 17 S 1.81404 * 113.61410 * 139.98306 * 15 14 12 18 18 C 1.76196 * 103.00225 * 176.53160 * 17 15 14 19 19 C 1.38968 * 120.08305 * 179.97438 * 18 17 15 20 20 C 1.38085 * 119.91937 * 179.97438 * 19 18 17 21 21 C 1.38302 * 120.08110 * 0.02562 * 20 19 18 22 22 C 1.38293 * 120.16127 * 359.97438 * 21 20 19 23 23 C 1.38088 * 120.08132 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.17371 * 25.39321 * 15 14 12 25 25 C 1.38232 * 119.99471 * 0.27600 * 7 6 5 26 26 C 1.38228 * 120.00097 * 119.98228 * 4 2 1 27 27 H 0.96706 * 113.99805 * 60.00687 * 1 2 3 28 28 H 1.09004 * 109.46877 * 119.99198 * 2 1 3 29 29 H 1.48496 * 110.00503 * 59.99442 * 3 2 1 30 30 H 1.48496 * 110.00177 * 181.31823 * 3 2 1 31 31 H 1.07996 * 120.00406 * 359.97438 * 5 4 2 32 32 H 1.08009 * 119.99391 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46751 * 330.00454 * 8 7 6 34 34 H 1.08997 * 109.46996 * 210.00064 * 8 7 6 35 35 H 0.96995 * 120.00421 * 0.02562 * 11 9 8 36 36 H 1.09000 * 113.61541 * 334.57070 * 14 12 11 37 37 H 1.09004 * 113.69560 * 203.67583 * 14 12 11 38 38 H 1.08001 * 120.04118 * 359.95359 * 19 18 17 39 39 H 1.08010 * 119.95749 * 179.72362 * 20 19 18 40 40 H 1.07996 * 119.91798 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.96290 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.04189 * 180.02562 * 23 22 21 43 43 H 1.08994 * 113.61350 * 89.15840 * 24 15 14 44 44 H 1.08999 * 113.61311 * 220.06278 * 24 15 14 45 45 H 1.08000 * 119.99866 * 179.71797 * 25 7 6 46 46 H 1.08009 * 120.00255 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5974 -2.0339 -1.4490 6 6 2.0587 -2.6858 -2.5774 7 6 2.8531 -2.0140 -3.4876 8 6 3.3555 -2.7244 -4.7180 9 6 2.3626 -2.5516 -5.8384 10 8 1.3473 -1.9138 -5.6559 11 7 2.6035 -3.1048 -7.0435 12 6 1.6385 -2.9363 -8.1329 13 1 1.0117 -2.0530 -8.0103 14 6 2.2624 -3.0593 -9.5330 15 6 1.9767 -4.5675 -9.4419 16 1 2.7876 -5.1391 -8.9906 17 16 1.3861 -5.2905 -10.9972 18 6 1.2514 -7.0045 -10.6118 19 6 0.8170 -7.9038 -11.5781 20 6 0.7132 -9.2464 -11.2725 21 6 1.0404 -9.6964 -10.0063 22 6 1.4730 -8.8044 -9.0421 23 6 1.5793 -7.4603 -9.3405 24 6 0.8481 -4.2169 -8.4579 25 6 3.1909 -0.6919 -3.2665 26 6 2.7258 -0.0387 -2.1405 27 1 -0.3933 0.4416 -0.7652 28 1 1.7923 -0.5137 0.8901 29 1 1.5614 2.4680 1.2084 30 1 3.5345 1.7703 -0.0321 31 1 0.9769 -2.5589 -0.7379 32 1 1.7981 -3.7200 -2.7480 33 1 3.4768 -3.7856 -4.5006 34 1 4.3155 -2.3022 -5.0148 35 1 3.4156 -3.6146 -7.1896 36 1 3.3248 -2.8171 -9.5604 37 1 1.6927 -2.5532 -10.3125 38 1 0.5606 -7.5530 -12.5669 39 1 0.3715 -9.9452 -12.0217 40 1 0.9579 -10.7469 -9.7700 41 1 1.7281 -9.1594 -8.0545 42 1 1.9176 -6.7643 -8.5871 43 1 -0.1100 -4.0277 -8.9418 44 1 0.7704 -4.9079 -7.6185 45 1 3.8153 -0.1683 -3.9752 46 1 2.9861 0.9956 -1.9700 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12335836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:06 Heat of formation + Delta-G solvation = 19.314536 kcal Electronic energy + Delta-G solvation = -27313.448103 eV Core-core repulsion = 23454.577139 eV Total energy + Delta-G solvation = -3858.870965 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.123 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41876 -40.49652 -39.84820 -39.16722 -37.61482 -34.43901 -33.83947 -32.05688 -31.93039 -31.90322 -29.80359 -26.91579 -26.70134 -25.47988 -23.80955 -23.71144 -23.46087 -22.46637 -21.39920 -20.64068 -18.73272 -18.49458 -18.32883 -17.55545 -17.24841 -16.89174 -16.60134 -16.34144 -16.32668 -16.01008 -15.81683 -15.70039 -15.50130 -14.90358 -14.82550 -14.69360 -14.49545 -14.40622 -14.16844 -14.05446 -13.80919 -13.61016 -13.35580 -13.17627 -12.99606 -12.77367 -12.26587 -12.24368 -12.09628 -11.97817 -11.86103 -11.70447 -11.64932 -11.09420 -10.98820 -10.73997 -10.45628 -10.11281 -9.98153 -9.87384 -9.60417 -8.40445 -5.01234 0.21640 0.24060 0.37142 0.45698 0.53880 1.30052 1.38798 1.59955 1.62252 1.92117 2.09726 2.72854 2.78626 3.26973 3.31702 3.49224 3.62486 3.67395 3.79462 3.79692 3.90818 3.91925 3.99189 4.02747 4.05916 4.20519 4.36449 4.45354 4.46015 4.46560 4.48459 4.52604 4.62218 4.64818 4.69625 4.72549 4.76317 4.80253 4.87306 4.96615 5.02131 5.04985 5.09104 5.26304 5.38229 5.41532 5.52603 5.53758 5.54022 5.59109 5.93818 6.02145 6.53062 6.71036 7.26159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.774 3.226 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.518 3.482 10 O -0.573 6.573 11 N -0.703 5.703 12 C 0.128 3.872 13 H 0.094 0.906 14 C -0.105 4.105 15 C -0.093 4.093 16 H 0.125 0.875 17 S -0.135 6.135 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.109 4.109 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.124 4.124 27 H 0.394 0.606 28 H 0.105 0.895 29 H -0.299 1.299 30 H -0.281 1.281 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.418 0.582 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.143 0.857 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -1.769 -3.088 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.187 4.187 3 Si 0.680 3.320 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.137 4.137 9 C 0.306 3.694 10 O -0.451 6.451 11 N -0.355 5.355 12 C 0.020 3.980 13 H 0.112 0.888 14 C -0.144 4.144 15 C -0.222 4.222 16 H 0.143 0.857 17 S 0.112 5.888 18 C -0.209 4.209 19 C -0.145 4.145 20 C -0.129 4.129 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.163 4.163 24 C -0.177 4.177 25 C -0.127 4.127 26 C -0.142 4.142 27 H 0.243 0.757 28 H 0.123 0.877 29 H -0.227 1.227 30 H -0.208 1.208 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.255 0.745 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.161 0.839 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.511 -0.356 -3.056 5.460 hybrid contribution 0.351 -1.735 1.257 2.172 sum 4.863 -2.091 -1.798 5.590 Atomic orbital electron populations 1.86447 1.17517 1.82230 1.50382 1.25223 0.85125 1.11092 0.97236 0.93593 0.78001 0.75646 0.84756 1.20403 0.99675 0.95356 0.97391 1.21076 0.99348 0.94363 0.97931 1.21235 0.97290 1.00649 0.94218 1.19576 0.97737 0.94520 0.95407 1.20759 0.99010 1.04374 0.89590 1.20982 0.86967 0.77661 0.83811 1.90756 1.29811 1.41774 1.82774 1.45578 1.24514 1.55260 1.10197 1.21680 0.91509 0.98392 0.86421 0.88833 1.23129 1.03961 0.91155 0.96174 1.25127 1.02129 0.99879 0.95078 0.85722 1.85631 1.83054 0.98959 1.21173 1.21906 1.04075 0.97342 0.97595 1.21005 1.01110 0.93418 0.98965 1.21412 0.98670 0.95112 0.97680 1.21542 0.99418 1.01022 0.93421 1.21412 0.98253 0.92758 1.00436 1.21387 1.02525 0.97196 0.95240 1.23752 0.97691 0.97913 0.98335 1.21246 0.99999 0.94110 0.97354 1.21174 0.98247 1.00008 0.94722 0.75672 0.87745 1.22681 1.20800 0.86091 0.85109 0.85359 0.84804 0.74496 0.87713 0.87728 0.85420 0.83884 0.83940 0.83836 0.84684 0.88610 0.90631 0.83906 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.06 12.77 -148.98 -1.90 -3.96 16 2 C -0.08 -0.18 2.82 71.23 0.20 0.02 16 3 Si 0.77 -0.10 29.79 68.60 2.04 1.94 16 4 C -0.13 -0.40 5.39 -19.87 -0.11 -0.51 16 5 C -0.11 -0.46 9.61 22.27 0.21 -0.25 16 6 C -0.12 -0.26 9.70 22.27 0.22 -0.05 16 7 C -0.07 -0.01 4.37 -19.87 -0.09 -0.09 16 8 C -0.10 0.66 5.83 29.10 0.17 0.83 16 9 C 0.52 -0.68 7.82 87.66 0.69 0.01 16 10 O -0.57 -5.19 15.63 -3.04 -0.05 -5.24 16 11 N -0.70 4.79 5.26 -439.75 -2.31 2.48 16 12 C 0.13 -0.52 4.33 45.58 0.20 -0.33 16 13 H 0.09 0.07 7.46 -2.39 -0.02 0.05 16 14 C -0.10 0.71 7.42 31.12 0.23 0.94 16 15 C -0.09 0.46 2.86 31.12 0.09 0.55 16 16 H 0.12 -0.95 6.96 -2.39 -0.02 -0.97 16 17 S -0.13 -0.19 21.72 -56.49 -1.23 -1.41 16 18 C -0.10 -0.31 6.11 22.62 0.14 -0.18 16 19 C -0.12 -0.41 9.79 22.41 0.22 -0.19 16 20 C -0.11 -0.11 10.04 22.25 0.22 0.11 16 21 C -0.13 0.02 10.04 22.30 0.22 0.24 16 22 C -0.11 0.04 10.04 22.25 0.22 0.26 16 23 C -0.14 -0.10 9.33 22.41 0.21 0.10 16 24 C -0.14 0.43 7.30 31.18 0.23 0.66 16 25 C -0.11 -0.02 9.70 22.27 0.22 0.20 16 26 C -0.12 -0.13 8.67 22.27 0.19 0.06 16 27 H 0.39 -1.40 8.70 -74.05 -0.64 -2.04 16 28 H 0.11 0.34 7.96 -2.38 -0.02 0.32 16 29 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 30 H -0.28 -1.01 7.11 99.48 0.71 -0.31 16 31 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 32 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 33 H 0.13 -1.46 8.09 -2.39 -0.02 -1.48 16 34 H 0.13 -1.64 8.08 -2.39 -0.02 -1.66 16 35 H 0.42 -5.53 8.70 -92.71 -0.81 -6.33 16 36 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 37 H 0.10 -0.60 8.10 -2.38 -0.02 -0.62 16 38 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 40 H 0.14 -0.61 8.06 -2.91 -0.02 -0.64 16 41 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 42 H 0.14 -0.42 5.58 -2.91 -0.02 -0.43 16 43 H 0.10 -0.09 8.10 -2.39 -0.02 -0.11 16 44 H 0.07 -0.18 8.11 -2.39 -0.02 -0.20 16 45 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 46 H 0.14 -0.40 4.89 -2.91 -0.01 -0.42 16 Total: 0.00 -22.15 395.83 -0.16 -22.32 By element: Atomic # 1 Polarization: -18.11 SS G_CDS: -0.40 Total: -18.52 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 3.68 Total: 2.39 kcal Atomic # 7 Polarization: 4.79 SS G_CDS: -2.31 Total: 2.48 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -1.95 Total: -9.20 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.04 Total: 1.94 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -1.23 Total: -1.41 kcal Total: -22.15 -0.16 -22.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12335836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.630 kcal (2) G-P(sol) polarization free energy of solvation -22.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds