Wall clock time and date at job start Sat Mar 6 2021 19:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38405 * 119.82699 * 119.72626 * 4 2 1 6 6 C 1.37891 * 120.16914 * 179.76774 * 5 4 2 7 7 C 1.39837 * 119.82658 * 0.52925 * 6 5 4 8 8 C 1.47207 * 120.16806 * 179.70745 * 7 6 5 9 9 C 1.34808 * 119.99889 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99456 * 180.02562 * 9 8 7 11 11 O 1.21691 * 120.00372 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99717 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99823 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.84971 * 336.20511 * 13 12 10 15 15 C 1.53779 * 113.60938 * 107.50677 * 13 12 10 16 16 C 1.53776 * 87.08091 * 89.11550 * 15 13 12 17 17 H 1.08996 * 113.69538 * 270.86745 * 16 15 13 18 18 S 1.81406 * 113.61602 * 139.97925 * 16 15 13 19 19 C 1.76194 * 102.99959 * 87.50034 * 18 16 15 20 20 C 1.38975 * 120.08445 * 359.73059 * 19 18 16 21 21 C 1.38074 * 119.92204 * 179.72201 * 20 19 18 22 22 C 1.38307 * 120.08101 * 0.57111 * 21 20 19 23 23 C 1.38306 * 120.15639 * 359.67830 * 22 21 20 24 24 C 1.38081 * 120.08131 * 0.04796 * 23 22 21 25 25 C 1.53779 * 113.61429 * 205.00400 * 13 12 10 26 26 C 1.39838 * 119.65843 * 359.72375 * 7 6 5 27 27 C 1.37885 * 119.82707 * 359.97438 * 26 7 6 28 28 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 29 29 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 30 30 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 31 31 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 32 32 H 1.08002 * 119.91432 * 0.02562 * 5 4 2 33 33 H 1.07996 * 120.08460 * 180.25787 * 6 5 4 34 34 H 1.08001 * 119.99784 * 180.02562 * 8 7 6 35 35 H 1.07991 * 120.00224 * 0.02562 * 9 8 7 36 36 H 0.96993 * 119.99752 * 0.02562 * 12 10 9 37 37 H 1.09007 * 113.60927 * 203.66352 * 15 13 12 38 38 H 1.09002 * 113.61807 * 334.56341 * 15 13 12 39 39 H 1.07997 * 120.03317 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.96559 * 180.27522 * 21 20 19 41 41 H 1.07997 * 119.92324 * 179.70156 * 22 21 20 42 42 H 1.08005 * 119.95475 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.03419 * 179.97438 * 24 23 22 44 44 H 1.09001 * 113.61357 * 25.43169 * 25 13 12 45 45 H 1.08991 * 113.61618 * 156.34086 * 25 13 12 46 46 H 1.07998 * 120.08467 * 179.97438 * 26 7 6 47 47 H 1.08004 * 119.91536 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7222 -0.0328 -2.1420 6 6 3.1897 -0.6773 -3.2677 7 6 2.8536 -2.0159 -3.4928 8 6 3.3432 -2.7095 -4.6954 9 6 4.1181 -2.0543 -5.5828 10 6 4.6046 -2.7441 -6.7794 11 8 4.3091 -3.9086 -6.9728 12 7 5.3788 -2.0888 -7.6670 13 6 5.8651 -2.7788 -8.8644 14 1 5.9032 -3.8613 -8.7430 15 6 5.1717 -2.3263 -10.1602 16 6 6.2619 -1.2478 -10.2740 17 1 6.0098 -0.3152 -9.7692 18 16 6.8576 -0.9926 -11.9684 19 6 5.7338 0.2044 -12.6076 20 6 4.7037 0.6885 -11.8102 21 6 3.8284 1.6308 -12.3127 22 6 3.9686 2.0841 -13.6118 23 6 4.9895 1.6007 -14.4100 24 6 5.8720 0.6625 -13.9124 25 6 7.1584 -2.1775 -9.4393 26 6 2.0498 -2.6922 -2.5697 27 6 1.5953 -2.0357 -1.4456 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5616 2.4679 -1.2086 32 1 2.9772 1.0023 -1.9690 33 1 3.8101 -0.1484 -3.9760 34 1 3.0817 -3.7433 -4.8666 35 1 4.3799 -1.0207 -5.4114 36 1 5.6140 -1.1605 -7.5129 37 1 5.2077 -3.0694 -10.9570 38 1 4.1720 -1.9218 -10.0022 39 1 4.5905 0.3311 -10.7974 40 1 3.0303 2.0107 -11.6922 41 1 3.2796 2.8176 -14.0037 42 1 5.0962 1.9573 -15.4238 43 1 6.6686 0.2853 -14.5365 44 1 7.7625 -1.6526 -8.6992 45 1 7.7375 -2.8796 -10.0389 46 1 1.7857 -3.7260 -2.7368 47 1 0.9741 -2.5565 -0.7319 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_12360594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:41 Heat of formation + Delta-G solvation = 36.511831 kcal Electronic energy + Delta-G solvation = -28036.695809 eV Core-core repulsion = 24050.344435 eV Total energy + Delta-G solvation = -3986.351374 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.123 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33690 -40.66941 -39.86657 -39.29544 -37.80442 -35.20806 -34.34091 -32.36168 -32.07037 -31.91004 -31.39574 -27.66498 -27.01232 -26.38967 -24.28743 -24.00829 -23.68051 -23.34998 -22.16104 -20.83258 -20.44568 -18.91617 -18.68854 -18.48199 -17.81484 -17.48252 -17.03628 -16.73025 -16.46974 -16.32691 -15.89873 -15.86759 -15.76400 -15.31611 -15.28256 -14.88983 -14.85738 -14.46940 -14.39872 -14.18369 -14.04035 -13.84999 -13.78746 -13.74521 -13.62962 -13.22536 -13.03807 -12.37762 -12.29158 -12.15327 -12.07688 -11.99055 -11.97463 -11.71742 -11.40099 -11.12109 -11.00537 -10.74144 -10.42347 -10.19215 -10.10467 -9.97118 -9.33443 -8.37564 -5.06007 -0.63815 0.23248 0.26185 0.38408 0.51118 0.82092 1.18337 1.35072 1.54807 1.87213 2.00710 2.19162 2.68506 2.73824 3.15002 3.17669 3.24815 3.44589 3.56938 3.61514 3.67294 3.71163 3.78647 3.87156 3.95565 4.04153 4.07322 4.14529 4.18165 4.25011 4.33498 4.41438 4.42134 4.50538 4.51530 4.57743 4.63608 4.69920 4.74706 4.77384 4.83626 4.86831 4.97468 4.99640 5.02080 5.26437 5.27008 5.36448 5.40547 5.43148 5.49540 5.53738 5.76200 5.91557 6.38357 6.51526 7.15268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.075 4.075 3 Si 0.684 3.316 4 C -0.062 4.062 5 C -0.126 4.126 6 C -0.093 4.093 7 C -0.075 4.075 8 C -0.010 4.010 9 C -0.218 4.218 10 C 0.553 3.447 11 O -0.538 6.538 12 N -0.712 5.712 13 C 0.126 3.874 14 H 0.114 0.886 15 C -0.137 4.137 16 C -0.108 4.108 17 H 0.110 0.890 18 S -0.104 6.104 19 C -0.083 4.083 20 C -0.132 4.132 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.100 4.100 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.089 4.089 27 C -0.091 4.091 28 H 0.384 0.616 29 H 0.077 0.923 30 H -0.254 1.254 31 H -0.250 1.250 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.402 0.598 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 4.127 4.479 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.186 4.186 3 Si 0.585 3.415 4 C -0.062 4.062 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.075 4.075 8 C -0.030 4.030 9 C -0.239 4.239 10 C 0.342 3.658 11 O -0.416 6.416 12 N -0.363 5.363 13 C 0.018 3.982 14 H 0.132 0.868 15 C -0.178 4.178 16 C -0.236 4.236 17 H 0.128 0.872 18 S 0.143 5.857 19 C -0.196 4.196 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.155 4.155 26 C -0.107 4.107 27 C -0.109 4.109 28 H 0.232 0.768 29 H 0.095 0.905 30 H -0.179 1.179 31 H -0.175 1.175 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.236 0.764 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.152 0.848 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.193 2.977 2.871 4.304 hybrid contribution -0.895 0.832 0.406 1.288 sum 0.297 3.808 3.277 5.033 Atomic orbital electron populations 1.86489 1.17013 1.81849 1.49791 1.24726 0.85897 1.10487 0.97461 0.95228 0.80655 0.78033 0.87572 1.19550 0.97175 0.94478 0.94994 1.20810 0.99633 0.99058 0.94884 1.21291 0.98997 0.93875 0.96939 1.19045 0.99473 0.93833 0.95192 1.22417 0.90856 0.99622 0.90062 1.22847 1.03901 1.01131 0.96000 1.18316 0.78002 0.86393 0.83043 1.90845 1.57282 1.16619 1.76844 1.45554 1.52592 1.15529 1.22584 1.21777 0.93747 0.98733 0.83924 0.86780 1.23778 0.97985 0.97587 0.98409 1.25090 1.01649 1.01503 0.95408 0.87153 1.85544 1.39505 1.49229 1.11435 1.21751 0.99328 1.00817 0.97664 1.21160 0.95694 0.99227 0.99530 1.21097 0.98619 0.96476 0.95889 1.21245 0.98563 1.00463 0.94267 1.21151 0.94550 0.96335 0.99985 1.20810 1.00113 0.97996 0.93658 1.23178 0.96234 0.97998 0.98071 1.21481 0.95798 1.00174 0.93270 1.20985 0.98594 0.93726 0.97594 0.76845 0.90483 1.17942 1.17482 0.86145 0.85115 0.84246 0.85270 0.76376 0.87519 0.90300 0.86041 0.85704 0.85645 0.85343 0.85457 0.89427 0.87421 0.84755 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.19 12.74 -35.23 -0.45 -0.26 16 2 C -0.08 0.05 2.81 36.00 0.10 0.15 16 3 Si 0.68 -1.11 29.77 -169.99 -5.06 -6.17 16 4 C -0.06 -0.10 5.43 -104.50 -0.57 -0.67 16 5 C -0.13 -0.19 8.65 -39.65 -0.34 -0.53 16 6 C -0.09 -0.07 9.41 -39.11 -0.37 -0.43 16 7 C -0.08 -0.08 5.87 -105.06 -0.62 -0.69 16 8 C -0.01 -0.01 9.46 -37.16 -0.35 -0.36 16 9 C -0.22 0.01 9.41 -37.50 -0.35 -0.35 16 10 C 0.55 0.98 7.74 -12.96 -0.10 0.88 16 11 O -0.54 -3.09 15.83 5.20 0.08 -3.01 16 12 N -0.71 0.73 5.26 -54.41 -0.29 0.44 16 13 C 0.13 -0.09 4.32 -67.12 -0.29 -0.39 16 14 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 15 C -0.14 0.10 7.35 -25.92 -0.19 -0.09 16 16 C -0.11 0.14 2.89 -25.92 -0.07 0.06 16 17 H 0.11 -0.22 6.88 -51.93 -0.36 -0.58 16 18 S -0.10 -0.11 21.72 -107.50 -2.33 -2.45 16 19 C -0.08 -0.17 6.11 -39.04 -0.24 -0.40 16 20 C -0.13 -0.16 9.32 -39.37 -0.37 -0.53 16 21 C -0.10 -0.08 10.04 -39.62 -0.40 -0.48 16 22 C -0.12 -0.08 10.04 -39.53 -0.40 -0.48 16 23 C -0.10 -0.09 10.04 -39.61 -0.40 -0.49 16 24 C -0.10 -0.18 9.79 -39.37 -0.39 -0.57 16 25 C -0.12 0.24 7.42 -25.92 -0.19 0.04 16 26 C -0.09 -0.07 9.80 -39.11 -0.38 -0.45 16 27 C -0.09 -0.11 9.59 -39.65 -0.38 -0.49 16 28 H 0.38 -2.05 8.74 45.56 0.40 -1.66 16 29 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 31 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 32 H 0.12 0.10 4.85 -52.49 -0.25 -0.15 16 33 H 0.13 -0.21 6.17 -52.49 -0.32 -0.54 16 34 H 0.14 0.16 7.52 -52.49 -0.39 -0.24 16 35 H 0.13 -0.33 6.07 -52.49 -0.32 -0.65 16 36 H 0.40 -1.45 8.68 -40.82 -0.35 -1.80 16 37 H 0.11 -0.04 8.10 -51.93 -0.42 -0.46 16 38 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.12 -0.02 5.64 -52.49 -0.30 -0.32 16 40 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 41 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 42 H 0.13 -0.14 8.06 -52.48 -0.42 -0.57 16 43 H 0.13 0.10 8.06 -52.49 -0.42 -0.33 16 44 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 45 H 0.11 -0.22 8.10 -51.93 -0.42 -0.64 16 46 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 47 H 0.13 0.00 8.06 -52.48 -0.42 -0.42 16 LS Contribution 405.82 15.07 6.12 6.12 Total: 0.00 -9.05 405.82 -14.35 -23.40 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: -6.12 Total: -11.80 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -6.29 Total: -6.27 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.29 Total: 0.44 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.37 Total: -3.27 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.06 Total: -6.17 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.33 Total: -2.45 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -9.05 -14.35 -23.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12360594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.911 kcal (2) G-P(sol) polarization free energy of solvation -9.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds