Wall clock time and date at job start Sat Mar 6 2021 19:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38405 * 119.82699 * 119.72626 * 4 2 1 6 6 C 1.37891 * 120.16914 * 179.76774 * 5 4 2 7 7 C 1.39837 * 119.82658 * 0.52925 * 6 5 4 8 8 C 1.47207 * 120.16806 * 179.70745 * 7 6 5 9 9 C 1.34808 * 119.99889 * 0.02562 * 8 7 6 10 10 C 1.46430 * 119.99456 * 180.02562 * 9 8 7 11 11 O 1.21691 * 120.00372 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99717 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99823 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.84971 * 336.20511 * 13 12 10 15 15 C 1.53779 * 113.60938 * 107.50677 * 13 12 10 16 16 C 1.53776 * 87.08091 * 89.11550 * 15 13 12 17 17 H 1.08996 * 113.69538 * 270.86745 * 16 15 13 18 18 S 1.81406 * 113.61602 * 139.97925 * 16 15 13 19 19 C 1.76194 * 102.99959 * 87.50034 * 18 16 15 20 20 C 1.38975 * 120.08445 * 359.73059 * 19 18 16 21 21 C 1.38074 * 119.92204 * 179.72201 * 20 19 18 22 22 C 1.38307 * 120.08101 * 0.57111 * 21 20 19 23 23 C 1.38306 * 120.15639 * 359.67830 * 22 21 20 24 24 C 1.38081 * 120.08131 * 0.04796 * 23 22 21 25 25 C 1.53779 * 113.61429 * 205.00400 * 13 12 10 26 26 C 1.39838 * 119.65843 * 359.72375 * 7 6 5 27 27 C 1.37885 * 119.82707 * 359.97438 * 26 7 6 28 28 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 29 29 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 30 30 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 31 31 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 32 32 H 1.08002 * 119.91432 * 0.02562 * 5 4 2 33 33 H 1.07996 * 120.08460 * 180.25787 * 6 5 4 34 34 H 1.08001 * 119.99784 * 180.02562 * 8 7 6 35 35 H 1.07991 * 120.00224 * 0.02562 * 9 8 7 36 36 H 0.96993 * 119.99752 * 0.02562 * 12 10 9 37 37 H 1.09007 * 113.60927 * 203.66352 * 15 13 12 38 38 H 1.09002 * 113.61807 * 334.56341 * 15 13 12 39 39 H 1.07997 * 120.03317 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.96559 * 180.27522 * 21 20 19 41 41 H 1.07997 * 119.92324 * 179.70156 * 22 21 20 42 42 H 1.08005 * 119.95475 * 180.02562 * 23 22 21 43 43 H 1.08001 * 120.03419 * 179.97438 * 24 23 22 44 44 H 1.09001 * 113.61357 * 25.43169 * 25 13 12 45 45 H 1.08991 * 113.61618 * 156.34086 * 25 13 12 46 46 H 1.07998 * 120.08467 * 179.97438 * 26 7 6 47 47 H 1.08004 * 119.91536 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7222 -0.0328 -2.1420 6 6 3.1897 -0.6773 -3.2677 7 6 2.8536 -2.0159 -3.4928 8 6 3.3432 -2.7095 -4.6954 9 6 4.1181 -2.0543 -5.5828 10 6 4.6046 -2.7441 -6.7794 11 8 4.3091 -3.9086 -6.9728 12 7 5.3788 -2.0888 -7.6670 13 6 5.8651 -2.7788 -8.8644 14 1 5.9032 -3.8613 -8.7430 15 6 5.1717 -2.3263 -10.1602 16 6 6.2619 -1.2478 -10.2740 17 1 6.0098 -0.3152 -9.7692 18 16 6.8576 -0.9926 -11.9684 19 6 5.7338 0.2044 -12.6076 20 6 4.7037 0.6885 -11.8102 21 6 3.8284 1.6308 -12.3127 22 6 3.9686 2.0841 -13.6118 23 6 4.9895 1.6007 -14.4100 24 6 5.8720 0.6625 -13.9124 25 6 7.1584 -2.1775 -9.4393 26 6 2.0498 -2.6922 -2.5697 27 6 1.5953 -2.0357 -1.4456 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5616 2.4679 -1.2086 32 1 2.9772 1.0023 -1.9690 33 1 3.8101 -0.1484 -3.9760 34 1 3.0817 -3.7433 -4.8666 35 1 4.3799 -1.0207 -5.4114 36 1 5.6140 -1.1605 -7.5129 37 1 5.2077 -3.0694 -10.9570 38 1 4.1720 -1.9218 -10.0022 39 1 4.5905 0.3311 -10.7974 40 1 3.0303 2.0107 -11.6922 41 1 3.2796 2.8176 -14.0037 42 1 5.0962 1.9573 -15.4238 43 1 6.6686 0.2853 -14.5365 44 1 7.7625 -1.6526 -8.6992 45 1 7.7375 -2.8796 -10.0389 46 1 1.7857 -3.7260 -2.7368 47 1 0.9741 -2.5565 -0.7319 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12360594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:40 Heat of formation + Delta-G solvation = 41.167947 kcal Electronic energy + Delta-G solvation = -28036.493905 eV Core-core repulsion = 24050.344435 eV Total energy + Delta-G solvation = -3986.149470 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.123 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39361 -40.67065 -39.88815 -39.36104 -37.73037 -35.24342 -34.41271 -32.37856 -32.09345 -31.93569 -31.40011 -27.66126 -26.93959 -26.35901 -24.29183 -24.03913 -23.70817 -23.37187 -22.18609 -20.86784 -20.43699 -18.94797 -18.70226 -18.38295 -17.81934 -17.47553 -17.07250 -16.71477 -16.48436 -16.32270 -15.99421 -15.89181 -15.80571 -15.31795 -15.25217 -14.90433 -14.87805 -14.46717 -14.40623 -14.20915 -14.06706 -13.86309 -13.81311 -13.68016 -13.60034 -13.22120 -13.06331 -12.40616 -12.28570 -12.14169 -12.08459 -11.95931 -11.92907 -11.71121 -11.44482 -11.21854 -11.10080 -10.77618 -10.33589 -10.23312 -10.13984 -10.01422 -9.35087 -8.43888 -4.94647 -0.67470 0.18421 0.22424 0.34043 0.49687 0.76327 1.28839 1.34093 1.63094 1.94705 2.00135 2.11011 2.66376 2.69741 3.21015 3.24585 3.34201 3.44060 3.59613 3.64390 3.72442 3.74564 3.87070 3.87574 3.96306 4.05048 4.09515 4.17670 4.19901 4.30259 4.39277 4.43527 4.47126 4.49463 4.59474 4.62031 4.69022 4.72766 4.73088 4.81661 4.83871 4.90043 4.96517 4.99162 5.02710 5.23180 5.24697 5.33855 5.38596 5.43018 5.46735 5.50694 5.75091 5.90805 6.41360 6.87754 7.10163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.773 3.227 4 C -0.081 4.081 5 C -0.145 4.145 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.016 4.016 9 C -0.210 4.210 10 C 0.548 3.452 11 O -0.585 6.585 12 N -0.696 5.696 13 C 0.124 3.876 14 H 0.096 0.904 15 C -0.135 4.135 16 C -0.095 4.095 17 H 0.123 0.877 18 S -0.129 6.129 19 C -0.098 4.098 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.104 4.104 26 C -0.097 4.097 27 C -0.103 4.103 28 H 0.404 0.596 29 H 0.096 0.904 30 H -0.286 1.286 31 H -0.296 1.296 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.147 0.853 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 5.331 5.203 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.193 4.193 3 Si 0.679 3.321 4 C -0.081 4.081 5 C -0.162 4.162 6 C -0.114 4.114 7 C -0.082 4.082 8 C -0.036 4.036 9 C -0.231 4.231 10 C 0.339 3.661 11 O -0.467 6.467 12 N -0.347 5.347 13 C 0.016 3.984 14 H 0.114 0.886 15 C -0.176 4.176 16 C -0.224 4.224 17 H 0.141 0.859 18 S 0.117 5.883 19 C -0.210 4.210 20 C -0.165 4.165 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.115 4.115 27 C -0.120 4.120 28 H 0.255 0.745 29 H 0.114 0.886 30 H -0.213 1.213 31 H -0.224 1.224 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.176 0.824 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.165 0.835 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.202 4.211 3.616 5.679 hybrid contribution -0.911 0.466 0.121 1.030 sum 0.292 4.677 3.736 5.993 Atomic orbital electron populations 1.86437 1.17097 1.82436 1.51443 1.24885 0.86000 1.11149 0.97271 0.94289 0.77383 0.75472 0.84983 1.19944 0.97256 0.94950 0.95930 1.20988 1.00354 0.99341 0.95554 1.21559 0.98886 0.93833 0.97086 1.19118 0.99741 0.94111 0.95278 1.22368 0.91462 0.99379 0.90422 1.22973 1.03136 1.02166 0.94786 1.18642 0.77845 0.85903 0.83702 1.90826 1.59190 1.18698 1.77958 1.45435 1.51344 1.16116 1.21779 1.21721 0.94749 0.97972 0.83924 0.88568 1.23730 0.97956 0.97706 0.98165 1.25118 1.01412 1.01880 0.93978 0.85894 1.85589 1.39930 1.49337 1.13400 1.21911 0.99838 1.01213 0.98042 1.21368 0.95632 0.99421 1.00083 1.21401 0.98935 0.96278 0.96308 1.21551 0.98741 1.00699 0.94333 1.21422 0.94384 0.96051 1.00906 1.21013 1.00723 0.98677 0.93961 1.23141 0.95653 0.97631 0.97902 1.21732 0.95607 1.00920 0.93205 1.21161 0.98982 0.93888 0.98011 0.74459 0.88623 1.21314 1.22412 0.86064 0.82921 0.85238 0.82379 0.74511 0.88127 0.90749 0.84937 0.83982 0.83856 0.83718 0.85272 0.87832 0.87334 0.83517 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.70 12.74 -148.98 -1.90 -1.20 16 2 C -0.08 0.14 2.81 71.23 0.20 0.34 16 3 Si 0.77 -2.54 29.77 68.60 2.04 -0.50 16 4 C -0.08 -0.27 5.43 -19.79 -0.11 -0.38 16 5 C -0.14 -0.48 8.65 22.23 0.19 -0.29 16 6 C -0.10 -0.11 9.41 22.57 0.21 0.10 16 7 C -0.08 -0.18 5.87 -20.15 -0.12 -0.30 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.19 16 9 C -0.21 0.11 9.41 23.62 0.22 0.34 16 10 C 0.55 2.05 7.74 86.37 0.67 2.72 16 11 O -0.58 -7.55 15.83 -4.32 -0.07 -7.62 16 12 N -0.70 1.81 5.26 -444.26 -2.34 -0.52 16 13 C 0.12 -0.17 4.32 45.52 0.20 0.02 16 14 H 0.10 0.28 7.46 -2.39 -0.02 0.27 16 15 C -0.13 0.16 7.35 31.12 0.23 0.38 16 16 C -0.10 0.28 2.89 31.12 0.09 0.37 16 17 H 0.12 -0.65 6.88 -2.39 -0.02 -0.67 16 18 S -0.13 -0.33 21.72 -56.49 -1.23 -1.56 16 19 C -0.10 -0.43 6.11 22.62 0.14 -0.29 16 20 C -0.14 -0.32 9.32 22.41 0.21 -0.12 16 21 C -0.11 -0.11 10.04 22.25 0.22 0.11 16 22 C -0.13 -0.11 10.04 22.30 0.22 0.12 16 23 C -0.11 -0.19 10.04 22.25 0.22 0.04 16 24 C -0.12 -0.50 9.79 22.41 0.22 -0.28 16 25 C -0.10 0.49 7.42 31.12 0.23 0.72 16 26 C -0.10 -0.20 9.80 22.57 0.22 0.02 16 27 C -0.10 -0.28 9.59 22.22 0.21 -0.07 16 28 H 0.40 -4.73 8.74 -74.06 -0.65 -5.37 16 29 H 0.10 -0.54 7.96 -2.39 -0.02 -0.56 16 30 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 31 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 32 H 0.12 0.27 4.85 -2.91 -0.01 0.26 16 33 H 0.15 -0.69 6.17 -2.91 -0.02 -0.71 16 34 H 0.13 0.48 7.52 -2.91 -0.02 0.46 16 35 H 0.16 -1.12 6.07 -2.92 -0.02 -1.14 16 36 H 0.42 -3.71 8.68 -92.71 -0.80 -4.51 16 37 H 0.10 0.03 8.10 -2.38 -0.02 0.01 16 38 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.13 -0.14 5.64 -2.91 -0.02 -0.15 16 40 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 41 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 42 H 0.15 -0.37 8.06 -2.91 -0.02 -0.40 16 43 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 44 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.11 -0.47 8.10 -2.39 -0.02 -0.49 16 46 H 0.15 -0.22 8.06 -2.91 -0.02 -0.25 16 47 H 0.14 0.04 8.06 -2.91 -0.02 0.01 16 Total: 0.00 -22.76 405.82 0.03 -22.73 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.40 Total: -15.08 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 3.91 Total: 3.75 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.34 Total: -0.52 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -1.97 Total: -8.82 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: 2.04 Total: -0.50 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.23 Total: -1.56 kcal Total: -22.76 0.03 -22.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12360594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.898 kcal (2) G-P(sol) polarization free energy of solvation -22.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds