Wall clock time and date at job start Sat Mar 6 2021 19:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86292 * 109.47034 * 2 1 4 4 C 1.50694 * 109.46895 * 120.00084 * 2 1 3 5 5 C 1.38188 * 119.85000 * 14.99794 * 4 2 1 6 6 C 1.38308 * 120.15232 * 180.02562 * 5 4 2 7 7 F 1.35101 * 120.08593 * 180.02562 * 6 5 4 8 8 C 1.39811 * 119.82912 * 359.97438 * 6 5 4 9 9 C 1.47696 * 120.15237 * 179.97438 * 8 6 5 10 10 O 1.21566 * 119.99821 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99896 * 180.02562 * 9 8 6 12 12 C 1.46502 * 120.00359 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.84370 * 23.80145 * 12 11 9 14 14 C 1.53775 * 113.61504 * 154.99798 * 12 11 9 15 15 C 1.53781 * 87.08168 * 89.20377 * 14 12 11 16 16 H 1.08998 * 113.60961 * 270.79936 * 15 14 12 17 17 S 1.81399 * 113.61366 * 139.97850 * 15 14 12 18 18 C 1.76209 * 102.99804 * 174.99887 * 17 15 14 19 19 C 1.38968 * 120.07868 * 180.02562 * 18 17 15 20 20 C 1.38085 * 119.91541 * 179.74367 * 19 18 17 21 21 C 1.38304 * 120.08170 * 0.28085 * 20 19 18 22 22 C 1.38293 * 120.16056 * 359.97438 * 21 20 19 23 23 C 1.38087 * 120.08151 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.08185 * 25.43039 * 15 14 12 25 25 C 1.39655 * 119.68917 * 0.25721 * 8 6 5 26 26 C 1.38066 * 119.84874 * 359.48664 * 25 8 6 27 27 F 1.35109 * 119.91249 * 180.23281 * 26 25 8 28 28 H 0.96705 * 114.00187 * 299.99839 * 1 2 3 29 29 H 1.09000 * 109.46722 * 239.99752 * 2 1 3 30 30 H 1.48500 * 110.00275 * 178.68158 * 3 2 1 31 31 H 1.48502 * 109.99990 * 299.99816 * 3 2 1 32 32 H 1.08008 * 119.91822 * 0.02562 * 5 4 2 33 33 H 0.97003 * 120.00074 * 359.97438 * 11 9 8 34 34 H 1.08995 * 113.61570 * 334.65360 * 14 12 11 35 35 H 1.09000 * 113.61355 * 203.75385 * 14 12 11 36 36 H 1.08002 * 120.04475 * 0.02806 * 19 18 17 37 37 H 1.07999 * 119.95830 * 180.25063 * 20 19 18 38 38 H 1.07997 * 119.91873 * 179.97438 * 21 20 19 39 39 H 1.08007 * 119.95911 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.03990 * 179.97438 * 23 22 21 41 41 H 1.08998 * 113.61311 * 89.11840 * 24 15 14 42 42 H 1.08994 * 113.61414 * 220.02320 * 24 15 14 43 43 H 1.07997 * 120.06895 * 179.72512 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.0690 -1.4962 1.9711 6 6 1.5232 -2.1506 3.1017 7 9 0.6791 -2.9189 3.8246 8 6 2.8583 -2.0158 3.4941 9 6 3.3508 -2.7110 4.7006 10 8 2.5946 -3.4019 5.3553 11 7 4.6383 -2.5785 5.0763 12 6 5.1268 -3.2675 6.2734 13 1 4.5299 -4.1424 6.5312 14 6 6.6404 -3.5383 6.2538 15 6 6.8159 -2.1601 6.9131 16 1 6.9160 -1.3437 6.1980 17 16 8.0922 -2.1285 8.2018 18 6 8.1608 -0.4257 8.6498 19 6 9.0458 0.0008 9.6327 20 6 9.1006 1.3368 9.9775 21 6 8.2719 2.2491 9.3500 22 6 7.3863 1.8275 8.3751 23 6 7.3259 0.4931 8.0252 24 6 5.3896 -2.3287 7.4627 25 6 3.7226 -1.2161 2.7433 26 6 3.2567 -0.5729 1.6139 27 9 4.0929 0.1973 0.8838 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5139 -0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4678 -1.2085 32 1 0.0380 -1.5995 1.6663 33 1 5.2416 -2.0268 4.5541 34 1 7.0602 -3.5986 5.2497 35 1 6.9436 -4.3690 6.8910 36 1 9.6933 -0.7111 10.1232 37 1 9.7909 1.6696 10.7384 38 1 8.3166 3.2934 9.6219 39 1 6.7404 2.5427 7.8874 40 1 6.6337 0.1645 7.2640 41 1 5.3509 -2.8287 8.4305 42 1 4.7997 -1.4127 7.4345 43 1 4.7540 -1.1041 3.0433 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_12360598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:44 Heat of formation + Delta-G solvation = -52.618543 kcal Electronic energy + Delta-G solvation = -31002.850319 eV Core-core repulsion = 26357.489770 eV Total energy + Delta-G solvation = -4645.360549 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.53141 -50.01529 -41.67421 -40.45279 -39.88079 -39.23633 -37.78646 -34.75748 -32.96007 -32.07903 -31.92977 -31.53279 -28.30544 -27.08073 -26.59247 -24.34487 -24.10269 -23.70485 -23.39155 -22.15979 -20.88918 -19.80252 -19.17341 -18.75593 -18.58404 -18.06287 -17.85460 -17.49009 -17.24643 -16.92268 -16.73655 -16.46999 -16.18608 -15.99998 -15.89407 -15.83684 -15.81365 -15.73571 -15.14360 -14.94725 -14.57663 -14.45348 -14.22264 -14.18904 -13.86326 -13.78688 -13.78100 -13.33856 -13.28395 -13.05402 -12.63577 -12.32443 -12.19607 -12.04556 -11.77479 -11.59051 -11.17712 -11.12859 -11.10636 -10.77446 -10.39882 -10.30557 -9.99227 -9.80402 -8.40453 -5.16364 -0.87008 -0.40558 0.21051 0.36258 0.47437 1.00230 1.31191 1.40424 1.52830 1.69500 1.87896 2.21105 2.68053 2.71670 2.72386 2.96379 3.03514 3.08824 3.10357 3.31515 3.37067 3.51172 3.60723 3.67400 3.84465 3.93011 4.00833 4.12459 4.19031 4.25377 4.27268 4.39930 4.44633 4.45609 4.49466 4.52475 4.58062 4.62240 4.64745 4.70633 4.72604 4.79704 4.97373 5.24543 5.26179 5.31485 5.38444 5.51793 5.89421 6.13712 6.23271 6.91037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.072 4.072 3 Si 0.687 3.313 4 C -0.089 4.089 5 C -0.125 4.125 6 C 0.164 3.836 7 F -0.105 7.105 8 C -0.152 4.152 9 C 0.565 3.435 10 O -0.509 6.509 11 N -0.709 5.709 12 C 0.126 3.874 13 H 0.117 0.883 14 C -0.115 4.115 15 C -0.109 4.109 16 H 0.111 0.889 17 S -0.102 6.102 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.085 4.085 26 C 0.075 3.925 27 F -0.118 7.118 28 H 0.383 0.617 29 H 0.131 0.869 30 H -0.226 1.226 31 H -0.256 1.256 32 H 0.164 0.836 33 H 0.400 0.600 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 3.761 -0.144 4.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.181 4.181 3 Si 0.586 3.414 4 C -0.091 4.091 5 C -0.143 4.143 6 C 0.143 3.857 7 F -0.082 7.082 8 C -0.156 4.156 9 C 0.351 3.649 10 O -0.384 6.384 11 N -0.362 5.362 12 C 0.019 3.981 13 H 0.135 0.865 14 C -0.154 4.154 15 C -0.238 4.238 16 H 0.129 0.871 17 S 0.145 5.855 18 C -0.196 4.196 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.177 4.177 25 C -0.105 4.105 26 C 0.055 3.945 27 F -0.096 7.096 28 H 0.231 0.769 29 H 0.148 0.852 30 H -0.149 1.149 31 H -0.181 1.181 32 H 0.182 0.818 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.171 2.480 -0.258 3.306 hybrid contribution -0.192 0.823 -0.921 1.250 sum 1.980 3.303 -1.179 4.028 Atomic orbital electron populations 1.86538 1.16404 1.81396 1.49614 1.25159 0.85829 1.10702 0.96439 0.95160 0.81915 0.75757 0.88593 1.20463 0.92158 0.98041 0.98447 1.20865 1.02532 0.97291 0.93659 1.17619 0.86575 0.91167 0.90374 1.91659 1.69150 1.71618 1.75814 1.19806 0.93496 1.03470 0.98830 1.17817 0.82183 0.81031 0.83857 1.90903 1.55127 1.38390 1.53967 1.45531 1.10722 1.51378 1.28520 1.21827 0.94989 0.96568 0.84761 0.86498 1.23183 0.94797 0.95413 1.02050 1.25097 0.96878 1.02413 0.99426 0.87141 1.85570 1.49635 1.04611 1.45723 1.21748 1.00382 0.96871 1.00599 1.20812 0.98469 0.96324 0.96962 1.21154 0.98784 0.92659 0.99411 1.21245 0.96386 0.99979 0.96901 1.21101 0.98417 0.95253 0.97297 1.21156 0.99851 0.93596 1.01009 1.23784 0.93335 1.01256 0.99307 1.21086 1.00485 0.95524 0.93360 1.17213 0.88002 0.96453 0.92795 1.91609 1.70821 1.71572 1.75608 0.76915 0.85240 1.14940 1.18055 0.81841 0.76402 0.89363 0.87232 0.85461 0.85347 0.85635 0.85657 0.86041 0.87324 0.90160 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.08 11.63 -35.23 -0.41 0.67 16 2 C -0.07 0.15 2.96 36.00 0.11 0.26 16 3 Si 0.69 -1.54 30.81 -169.99 -5.24 -6.78 16 4 C -0.09 0.17 5.14 -104.49 -0.54 -0.37 16 5 C -0.12 0.19 9.20 -39.57 -0.36 -0.17 16 6 C 0.16 0.09 7.28 -38.97 -0.28 -0.20 16 7 F -0.10 -0.34 15.55 2.25 0.04 -0.31 16 8 C -0.15 0.05 5.88 -104.92 -0.62 -0.56 16 9 C 0.56 0.58 7.77 -12.40 -0.10 0.49 16 10 O -0.51 -2.62 14.94 5.31 0.08 -2.54 16 11 N -0.71 1.50 5.22 -54.01 -0.28 1.22 16 12 C 0.13 -0.24 4.32 -67.12 -0.29 -0.53 16 13 H 0.12 -0.04 7.46 -51.93 -0.39 -0.42 16 14 C -0.11 0.35 7.42 -25.92 -0.19 0.16 16 15 C -0.11 0.25 2.89 -25.92 -0.07 0.17 16 16 H 0.11 -0.35 6.88 -51.93 -0.36 -0.71 16 17 S -0.10 -0.03 21.72 -107.50 -2.33 -2.36 16 18 C -0.08 -0.10 6.11 -39.04 -0.24 -0.34 16 19 C -0.10 -0.12 9.79 -39.37 -0.39 -0.50 16 20 C -0.10 -0.03 10.04 -39.61 -0.40 -0.43 16 21 C -0.12 0.00 10.04 -39.54 -0.40 -0.40 16 22 C -0.10 0.00 10.04 -39.62 -0.40 -0.40 16 23 C -0.13 -0.05 9.32 -39.36 -0.37 -0.42 16 24 C -0.14 0.25 7.35 -25.92 -0.19 0.06 16 25 C -0.09 0.22 9.52 -39.12 -0.37 -0.16 16 26 C 0.07 -0.13 6.65 -39.49 -0.26 -0.39 16 27 F -0.12 0.07 12.80 2.25 0.03 0.10 16 28 H 0.38 -2.32 8.42 45.56 0.38 -1.94 16 29 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 30 H -0.23 0.02 5.26 56.52 0.30 0.31 16 31 H -0.26 -0.30 7.11 56.52 0.40 0.11 16 32 H 0.16 -0.45 7.06 -52.48 -0.37 -0.82 16 33 H 0.40 -1.91 6.74 -40.82 -0.27 -2.19 16 34 H 0.09 -0.34 8.14 -51.93 -0.42 -0.77 16 35 H 0.11 -0.33 8.10 -51.93 -0.42 -0.75 16 36 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 37 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 38 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 39 H 0.13 -0.24 8.06 -52.48 -0.42 -0.66 16 40 H 0.12 -0.16 5.64 -52.48 -0.30 -0.45 16 41 H 0.11 -0.16 8.10 -51.93 -0.42 -0.58 16 42 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 43 H 0.15 -0.79 6.40 -52.49 -0.34 -1.13 16 LS Contribution 378.03 15.07 5.70 5.70 Total: 0.00 -8.36 378.03 -12.51 -20.87 By element: Atomic # 1 Polarization: -8.11 SS G_CDS: -4.73 Total: -12.85 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -5.36 Total: -3.72 kcal Atomic # 7 Polarization: 1.50 SS G_CDS: -0.28 Total: 1.22 kcal Atomic # 8 Polarization: -1.54 SS G_CDS: -0.33 Total: -1.87 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.06 Total: -0.21 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.24 Total: -6.78 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.33 Total: -2.36 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -8.36 -12.51 -20.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12360598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.749 kcal (2) G-P(sol) polarization free energy of solvation -8.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds