Wall clock time and date at job start Sat Mar 6 2021 19:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35658 * 116.99605 * 2 1 4 4 C 1.40145 * 120.14727 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19081 * 359.74638 * 4 3 2 6 6 O 1.21591 * 120.00143 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99828 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99968 * 180.02562 * 7 5 4 9 9 H 1.08998 * 112.85159 * 25.32612 * 8 7 5 10 10 C 1.53782 * 113.61675 * 156.52957 * 8 7 5 11 11 C 1.53774 * 87.08362 * 89.11439 * 10 8 7 12 12 H 1.09002 * 113.61403 * 270.79980 * 11 10 8 13 13 S 1.81404 * 113.61605 * 139.98404 * 11 10 8 14 14 C 1.76198 * 103.00195 * 174.99806 * 13 11 10 15 15 C 1.38974 * 120.07743 * 359.72475 * 14 13 11 16 16 C 1.38092 * 119.91822 * 179.72166 * 15 14 13 17 17 C 1.38307 * 120.07537 * 0.52895 * 16 15 14 18 18 C 1.38304 * 120.16029 * 359.77127 * 17 16 15 19 19 C 1.38073 * 120.08237 * 359.95132 * 18 17 16 20 20 C 1.53785 * 113.61183 * 254.13499 * 8 7 5 21 21 C 1.39703 * 119.61662 * 179.72366 * 4 3 2 22 22 C 1.37789 * 119.90843 * 0.02562 * 21 4 3 23 23 C 1.50702 * 119.84980 * 180.02562 * 22 21 4 24 24 O 1.42898 * 109.47065 * 300.00220 * 23 22 21 25 25 Si 1.86299 * 109.47027 * 180.02562 * 23 22 21 26 26 C 1.38551 * 120.30055 * 0.02562 * 22 21 4 27 27 C 1.38057 * 120.38664 * 359.97438 * 26 22 21 28 28 H 1.08999 * 109.47174 * 60.00227 * 1 2 3 29 29 H 1.09000 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47722 * 299.99899 * 1 2 3 31 31 H 0.97002 * 120.00137 * 359.97438 * 7 5 4 32 32 H 1.09004 * 113.61283 * 203.66701 * 10 8 7 33 33 H 1.08997 * 113.61262 * 334.55786 * 10 8 7 34 34 H 1.08002 * 120.04751 * 0.02562 * 15 14 13 35 35 H 1.07995 * 119.96227 * 180.27771 * 16 15 14 36 36 H 1.08002 * 119.91558 * 179.74094 * 17 16 15 37 37 H 1.08004 * 119.95239 * 179.97438 * 18 17 16 38 38 H 1.08002 * 120.04193 * 180.02562 * 19 18 17 39 39 H 1.08996 * 113.61385 * 25.42974 * 20 8 7 40 40 H 1.09003 * 113.61575 * 156.33689 * 20 8 7 41 41 H 1.07996 * 120.04444 * 180.02562 * 21 4 3 42 42 H 1.09000 * 109.46981 * 60.00280 * 23 22 21 43 43 H 0.96701 * 114.00268 * 180.02562 * 24 23 22 44 44 H 1.48497 * 110.00096 * 60.00022 * 25 23 22 45 45 H 1.48499 * 109.99748 * 181.32054 * 25 23 22 46 46 H 1.08002 * 119.80228 * 179.97438 * 26 22 21 47 47 H 1.08006 * 119.94981 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 3.4441 1.2858 0.0005 5 6 4.2550 0.0533 0.0068 6 8 3.7095 -1.0334 0.0119 7 7 5.6004 0.1319 0.0078 8 6 6.4056 -1.0919 0.0134 9 1 5.8803 -1.9462 -0.4134 10 6 7.8245 -0.8984 -0.5472 11 6 8.2572 -0.5436 0.8852 12 1 8.1656 0.5171 1.1188 13 16 9.8714 -1.2300 1.3478 14 6 10.1511 -0.5427 2.9459 15 6 9.2101 0.3089 3.5123 16 6 9.4300 0.8411 4.7674 17 6 10.5901 0.5363 5.4560 18 6 11.5316 -0.3059 4.8927 19 6 11.3158 -0.8463 3.6406 20 6 7.0647 -1.3894 1.3707 21 6 4.0667 2.5364 -0.0053 22 6 3.3036 3.6837 -0.0111 23 6 3.9766 5.0321 -0.0180 24 8 4.7922 5.1634 1.1480 25 14 2.6824 6.3721 -0.0238 26 6 1.9205 3.6034 -0.0105 27 6 1.2924 2.3739 -0.0047 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 6.0356 0.9988 0.0041 32 1 8.2741 -1.8170 -0.9242 33 1 7.9078 -0.0670 -1.2471 34 1 8.3057 0.5502 2.9737 35 1 8.6972 1.4993 5.2101 36 1 10.7614 0.9573 6.4357 37 1 12.4365 -0.5413 5.4333 38 1 12.0513 -1.5041 3.2016 39 1 6.5350 -0.9541 2.2180 40 1 7.3070 -2.4421 1.5170 41 1 5.1445 2.6038 -0.0054 42 1 4.5985 5.1232 -0.9085 43 1 5.2566 6.0093 1.2101 44 1 1.8283 6.2586 1.1856 45 1 3.3330 7.7064 -0.0628 46 1 1.3302 4.5078 -0.0146 47 1 0.2137 2.3195 -0.0047 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_12496546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:48 Heat of formation + Delta-G solvation = -8.064478 kcal Electronic energy + Delta-G solvation = -30631.411936 eV Core-core repulsion = 26452.671537 eV Total energy + Delta-G solvation = -4178.740400 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81370 -40.74221 -39.81415 -39.17122 -38.88207 -37.37950 -34.40658 -32.53484 -32.03214 -31.91332 -31.85502 -28.64509 -26.97468 -26.79033 -26.20444 -25.02063 -23.66750 -23.43679 -22.66618 -21.49434 -20.64816 -19.44353 -18.73513 -18.65575 -18.32488 -17.67361 -17.55253 -16.82989 -16.76820 -16.50066 -16.15976 -15.98555 -15.84791 -15.76928 -15.66945 -15.54074 -14.86837 -14.76951 -14.48813 -14.35145 -14.16663 -14.08053 -13.90643 -13.79870 -13.67865 -13.43739 -13.17166 -13.05639 -12.57490 -12.41763 -12.24128 -12.08463 -12.06203 -11.90986 -11.82416 -11.64644 -11.05887 -10.84060 -10.69643 -10.56929 -10.23759 -10.03577 -9.92774 -9.27412 -8.32726 -5.07868 -0.25895 0.18992 0.27494 0.42647 0.56440 1.16117 1.40171 1.48887 1.82882 1.85632 2.04549 2.21599 2.66863 2.78011 3.17768 3.21696 3.23853 3.49510 3.55422 3.65773 3.71999 3.73600 3.91882 3.97382 4.00098 4.06717 4.16286 4.18488 4.20647 4.22133 4.40245 4.42198 4.46252 4.55605 4.56353 4.57654 4.60472 4.68780 4.70895 4.79172 4.84636 4.87198 4.94645 5.03989 5.06417 5.25311 5.31450 5.44720 5.47373 5.52293 5.57754 5.95728 6.26842 6.31298 6.49679 7.30189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.279 6.279 3 C 0.194 3.806 4 C -0.176 4.176 5 C 0.566 3.434 6 O -0.511 6.511 7 N -0.716 5.716 8 C 0.129 3.871 9 H 0.114 0.886 10 C -0.115 4.115 11 C -0.108 4.108 12 H 0.110 0.890 13 S -0.105 6.105 14 C -0.082 4.082 15 C -0.132 4.132 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.018 4.018 22 C -0.122 4.122 23 C -0.070 4.070 24 O -0.537 6.537 25 Si 0.678 3.322 26 C -0.044 4.044 27 C -0.213 4.213 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.078 0.922 43 H 0.381 0.619 44 H -0.254 1.254 45 H -0.259 1.259 46 H 0.135 0.865 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 4.644 -2.426 5.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.189 6.189 3 C 0.145 3.855 4 C -0.180 4.180 5 C 0.354 3.646 6 O -0.386 6.386 7 N -0.369 5.369 8 C 0.022 3.978 9 H 0.132 0.868 10 C -0.154 4.154 11 C -0.236 4.236 12 H 0.128 0.872 13 S 0.142 5.858 14 C -0.195 4.195 15 C -0.155 4.155 16 C -0.121 4.121 17 C -0.146 4.146 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.178 4.178 21 C -0.037 4.037 22 C -0.122 4.122 23 C -0.180 4.180 24 O -0.345 6.345 25 Si 0.579 3.421 26 C -0.062 4.062 27 C -0.231 4.231 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.234 0.766 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.096 0.904 43 H 0.229 0.771 44 H -0.178 1.178 45 H -0.185 1.185 46 H 0.152 0.848 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.800 2.953 -2.661 4.363 hybrid contribution 0.362 1.970 1.531 2.521 sum -1.438 4.922 -1.130 5.251 Atomic orbital electron populations 1.23241 0.78146 1.04782 1.01489 1.86379 1.21243 1.25135 1.86171 1.19069 0.90885 0.85091 0.90489 1.19261 0.90898 0.93690 1.14117 1.17925 0.81609 0.88736 0.76324 1.90854 1.71372 1.28548 1.47807 1.45579 1.05854 1.08882 1.76580 1.21739 0.90642 0.88821 0.96628 0.86812 1.23171 0.94464 1.04009 0.93800 1.25147 0.94401 1.02857 1.01241 0.87172 1.85514 1.24323 1.61319 1.14619 1.21749 0.98212 1.01164 0.98380 1.21178 0.98947 0.98687 0.96729 1.21106 0.97487 0.99183 0.94285 1.21239 0.94303 0.98763 1.00286 1.21139 0.99346 0.96711 0.94870 1.20803 0.96049 1.00765 0.95005 1.23827 0.94372 1.01233 0.98359 1.20914 0.99728 0.89903 0.93180 1.19016 0.93041 0.93702 1.06438 1.24700 1.01281 1.01749 0.90254 1.86577 1.63400 1.41158 1.43330 0.95141 0.81621 0.76449 0.88847 1.20935 0.93496 0.97438 0.94283 1.21208 1.00793 0.91408 1.09730 0.92191 0.87647 0.92340 0.76618 0.87408 0.89442 0.85987 0.85711 0.85690 0.85385 0.85478 0.90288 0.87558 0.84939 0.90418 0.77108 1.17844 1.18454 0.84786 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.28 -0.97 8.57 -40.55 -0.35 -1.32 16 3 C 0.19 0.48 6.70 -38.70 -0.26 0.22 16 4 C -0.18 -0.41 5.89 -104.84 -0.62 -1.02 16 5 C 0.57 1.94 7.76 -12.47 -0.10 1.85 16 6 O -0.51 -3.66 14.78 -16.59 -0.25 -3.91 16 7 N -0.72 -0.10 5.21 -54.06 -0.28 -0.38 16 8 C 0.13 -0.01 4.29 -67.12 -0.29 -0.30 16 9 H 0.11 0.15 7.50 -51.93 -0.39 -0.24 16 10 C -0.11 0.19 7.41 -25.92 -0.19 0.00 16 11 C -0.11 0.08 2.91 -25.78 -0.07 0.01 16 12 H 0.11 -0.14 6.85 -51.93 -0.36 -0.50 16 13 S -0.10 -0.15 21.72 -107.50 -2.34 -2.48 16 14 C -0.08 -0.19 6.11 -39.04 -0.24 -0.43 16 15 C -0.13 -0.23 9.32 -39.36 -0.37 -0.60 16 16 C -0.10 -0.13 10.04 -39.61 -0.40 -0.53 16 17 C -0.13 -0.13 10.04 -39.53 -0.40 -0.53 16 18 C -0.10 -0.12 10.04 -39.62 -0.40 -0.52 16 19 C -0.10 -0.21 9.79 -39.37 -0.39 -0.60 16 20 C -0.14 0.01 7.40 -25.77 -0.19 -0.18 16 21 C -0.02 0.00 9.09 -39.20 -0.36 -0.36 16 22 C -0.12 0.01 5.42 -104.67 -0.57 -0.56 16 23 C -0.07 0.11 2.81 36.01 0.10 0.21 16 24 O -0.54 0.24 12.74 -35.23 -0.45 -0.21 16 25 Si 0.68 -1.40 29.77 -169.99 -5.06 -6.46 16 26 C -0.04 0.03 8.66 -39.53 -0.34 -0.31 16 27 C -0.21 0.01 9.03 -39.48 -0.36 -0.35 16 28 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 29 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 30 H 0.06 -0.13 7.67 -51.93 -0.40 -0.52 16 31 H 0.40 -0.86 6.73 -40.82 -0.27 -1.13 16 32 H 0.11 -0.20 8.10 -51.93 -0.42 -0.62 16 33 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.12 0.06 5.64 -52.49 -0.30 -0.23 16 35 H 0.12 -0.05 8.06 -52.49 -0.42 -0.48 16 36 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.13 -0.11 8.06 -52.48 -0.42 -0.53 16 38 H 0.13 0.13 8.06 -52.49 -0.42 -0.30 16 39 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.11 0.01 8.10 -51.93 -0.42 -0.41 16 41 H 0.13 -0.24 6.40 -52.49 -0.34 -0.58 16 42 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 43 H 0.38 -1.57 8.74 45.56 0.40 -1.17 16 44 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 45 H -0.26 -0.03 7.11 56.52 0.40 0.37 16 46 H 0.13 -0.38 4.85 -52.49 -0.25 -0.63 16 47 H 0.14 -0.35 6.30 -52.48 -0.33 -0.68 16 LS Contribution 398.69 15.07 6.01 6.01 Total: 0.00 -9.50 398.69 -13.19 -22.69 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: -6.05 Total: -10.90 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.43 Total: -3.03 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -0.28 Total: -0.38 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -1.04 Total: -5.44 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.06 Total: -6.46 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.34 Total: -2.48 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -9.50 -13.19 -22.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12496546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.623 kcal (2) G-P(sol) polarization free energy of solvation -9.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds