Wall clock time and date at job start Sat Mar 6 2021 19:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86306 * 109.46784 * 2 1 4 4 C 1.50694 * 109.47243 * 240.00157 * 2 1 3 5 5 C 1.35089 * 126.07974 * 105.22821 * 4 2 1 6 6 N 1.35032 * 107.98013 * 179.73903 * 5 4 2 7 7 C 1.46501 * 125.93318 * 180.28021 * 6 5 4 8 8 C 1.50700 * 109.47344 * 124.99293 * 7 6 5 9 9 O 1.21278 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99655 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99853 * 179.97438 * 10 8 7 12 12 H 1.09002 * 112.84808 * 23.81545 * 11 10 8 13 13 C 1.53781 * 113.61210 * 155.00167 * 11 10 8 14 14 C 1.53786 * 87.08112 * 89.12284 * 13 11 10 15 15 H 1.09005 * 113.60860 * 270.88010 * 14 13 11 16 16 S 1.81391 * 113.61415 * 139.98053 * 14 13 11 17 17 C 1.76208 * 103.00004 * 174.99906 * 16 14 13 18 18 C 1.38975 * 120.07388 * 359.72218 * 17 16 14 19 19 C 1.38088 * 119.91331 * 179.71932 * 18 17 16 20 20 C 1.38298 * 120.08137 * 0.53875 * 19 18 17 21 21 C 1.38303 * 120.16236 * 359.75961 * 20 19 18 22 22 C 1.38088 * 120.07746 * 359.95800 * 21 20 19 23 23 C 1.53773 * 113.61861 * 252.50055 * 11 10 8 24 24 N 1.40077 * 108.14045 * 0.23842 * 6 5 4 25 25 C 1.31613 * 108.10782 * 0.02562 * 24 6 5 26 26 C 1.48418 * 126.03895 * 180.02562 * 25 24 6 27 27 C 1.39330 * 120.11799 * 136.66589 * 26 25 24 28 28 C 1.38030 * 119.87433 * 179.74727 * 27 26 25 29 29 C 1.38311 * 120.12169 * 0.55863 * 28 27 26 30 30 C 1.38322 * 120.24045 * 359.69477 * 29 28 27 31 31 C 1.38014 * 120.12207 * 0.02562 * 30 29 28 32 32 H 0.96698 * 114.00568 * 60.00335 * 1 2 3 33 33 H 1.09000 * 109.46956 * 119.99708 * 2 1 3 34 34 H 1.48498 * 110.00108 * 59.99820 * 3 2 1 35 35 H 1.48501 * 109.99746 * 181.31925 * 3 2 1 36 36 H 1.07998 * 126.00521 * 359.97438 * 5 4 2 37 37 H 1.09004 * 109.47018 * 244.99812 * 7 6 5 38 38 H 1.09006 * 109.46667 * 4.99262 * 7 6 5 39 39 H 0.97000 * 120.00550 * 0.02562 * 10 8 7 40 40 H 1.09002 * 113.61541 * 203.66803 * 13 11 10 41 41 H 1.09001 * 113.61812 * 334.57256 * 13 11 10 42 42 H 1.07993 * 120.04500 * 0.02562 * 18 17 16 43 43 H 1.08001 * 119.95823 * 180.27890 * 19 18 17 44 44 H 1.08004 * 119.92013 * 179.74564 * 20 19 18 45 45 H 1.08003 * 119.96279 * 179.97438 * 21 20 19 46 46 H 1.08003 * 120.03768 * 179.97438 * 22 21 20 47 47 H 1.09003 * 113.61832 * 25.43538 * 23 11 10 48 48 H 1.08999 * 113.61795 * 156.33473 * 23 11 10 49 49 H 1.07990 * 120.05927 * 0.02562 * 27 26 25 50 50 H 1.08000 * 119.93511 * 180.29376 * 28 27 26 51 51 H 1.07997 * 119.87930 * 179.71944 * 29 28 27 52 52 H 1.08008 * 119.93763 * 180.02562 * 30 29 28 53 53 H 1.08005 * 120.06315 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.4669 -0.1252 -2.3239 6 7 2.7962 -1.0995 -3.1989 7 6 3.4117 -0.9023 -4.5137 8 6 4.6763 -1.7170 -4.6037 9 8 5.0285 -2.3959 -3.6625 10 7 5.4152 -1.6918 -5.7305 11 6 6.6449 -2.4833 -5.8179 12 1 6.6516 -3.3318 -5.1337 13 6 7.0402 -2.8503 -7.2580 14 6 7.8253 -1.5285 -7.2957 15 1 7.2331 -0.6785 -7.6348 16 16 9.4247 -1.6572 -8.1418 17 6 10.0021 0.0075 -8.1534 18 6 9.2304 1.0162 -7.5892 19 6 9.6887 2.3188 -7.5949 20 6 10.9090 2.6218 -8.1710 21 6 11.6768 1.6214 -8.7389 22 6 11.2275 0.3157 -8.7317 23 6 7.9276 -1.6368 -5.7651 24 7 2.4481 -2.3317 -2.6309 25 6 1.9230 -2.1022 -1.4461 26 6 1.4178 -3.1292 -0.5011 27 6 1.7151 -3.0362 0.8569 28 6 1.2384 -3.9912 1.7321 29 6 0.4765 -5.0453 1.2615 30 6 0.1828 -5.1453 -0.0865 31 6 0.6496 -4.1929 -0.9696 32 1 -0.3934 0.4416 -0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5613 2.4680 1.2084 35 1 3.5345 1.7704 -0.0321 36 1 2.6103 0.9351 -2.4706 37 1 2.7177 -1.2214 -5.2913 38 1 3.6489 0.1530 -4.6491 39 1 5.1333 -1.1491 -6.4835 40 1 7.6724 -3.7357 -7.3251 41 1 6.1974 -2.8775 -7.9487 42 1 8.2758 0.7810 -7.1424 43 1 9.0917 3.1026 -7.1526 44 1 11.2630 3.6421 -8.1777 45 1 12.6290 1.8617 -9.1884 46 1 11.8275 -0.4649 -9.1758 47 1 7.8012 -0.6842 -5.2506 48 1 8.8024 -2.1904 -5.4241 49 1 2.3137 -2.2160 1.2247 50 1 1.4642 -3.9174 2.7856 51 1 0.1093 -5.7928 1.9491 52 1 -0.4128 -5.9703 -0.4486 53 1 0.4193 -4.2717 -2.0218 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12622748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:45:53 Heat of formation + Delta-G solvation = 110.198922 kcal Electronic energy + Delta-G solvation = -36227.316081 eV Core-core repulsion = 31545.780678 eV Total energy + Delta-G solvation = -4681.535403 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.145 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.49593 -41.27026 -39.89554 -39.82989 -39.26673 -37.65421 -34.87261 -34.36262 -32.32628 -32.08049 -31.94461 -31.89562 -31.41818 -28.91212 -26.94412 -26.60540 -25.87194 -24.24341 -23.70130 -23.50479 -23.40181 -22.17354 -21.52616 -21.00733 -20.72954 -18.78919 -18.75127 -18.55284 -17.75541 -17.56555 -17.33551 -16.86939 -16.55447 -16.50754 -16.26688 -16.18906 -15.83222 -15.76312 -15.65830 -15.44014 -15.26888 -14.88677 -14.87767 -14.46918 -14.37644 -14.31790 -14.27936 -14.13166 -13.96823 -13.85964 -13.66746 -13.61896 -13.27240 -13.17691 -12.48892 -12.42099 -12.26181 -12.15925 -12.10665 -11.91120 -11.87568 -11.72870 -11.70786 -11.31663 -11.08782 -10.75813 -10.63922 -10.23486 -10.21634 -9.98052 -9.91655 -9.77272 -9.32215 -8.42172 -5.02383 0.08971 0.21623 0.37329 0.42528 0.51620 0.80758 1.29575 1.36968 1.40931 1.43628 1.62833 1.75617 2.00525 2.03696 2.72963 2.85278 3.21359 3.26060 3.33986 3.52940 3.63034 3.64723 3.74280 3.76667 3.90561 3.94141 3.97031 3.99613 4.03458 4.15196 4.18328 4.20714 4.21888 4.39142 4.43390 4.46787 4.50445 4.52531 4.53253 4.59721 4.62796 4.73148 4.76082 4.76881 4.82635 4.83115 4.91533 4.95589 5.02330 5.06485 5.26194 5.27091 5.41295 5.41583 5.52256 5.53590 5.53998 5.58288 5.92693 5.93995 5.99930 6.40654 6.59352 6.91109 7.12199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.044 4.044 3 Si 0.802 3.198 4 C -0.270 4.270 5 C 0.080 3.920 6 N -0.360 5.360 7 C 0.110 3.890 8 C 0.498 3.502 9 O -0.564 6.564 10 N -0.694 5.694 11 C 0.128 3.872 12 H 0.085 0.915 13 C -0.105 4.105 14 C -0.090 4.090 15 H 0.132 0.868 16 S -0.138 6.138 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.107 4.107 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.134 4.134 24 N -0.293 5.293 25 C 0.107 3.893 26 C -0.025 4.025 27 C -0.110 4.110 28 C -0.125 4.125 29 C -0.119 4.119 30 C -0.125 4.125 31 C -0.109 4.109 32 H 0.391 0.609 33 H 0.091 0.909 34 H -0.301 1.301 35 H -0.285 1.285 36 H 0.230 0.770 37 H 0.146 0.854 38 H 0.184 0.816 39 H 0.422 0.578 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.122 0.878 50 H 0.144 0.856 51 H 0.147 0.853 52 H 0.144 0.856 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 7.769 -6.722 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.154 4.154 3 Si 0.707 3.293 4 C -0.282 4.282 5 C -0.065 4.065 6 N -0.141 5.141 7 C -0.013 4.013 8 C 0.284 3.716 9 O -0.441 6.441 10 N -0.348 5.348 11 C 0.019 3.981 12 H 0.103 0.897 13 C -0.145 4.145 14 C -0.219 4.219 15 H 0.150 0.850 16 S 0.108 5.892 17 C -0.209 4.209 18 C -0.162 4.162 19 C -0.127 4.127 20 C -0.154 4.154 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.175 4.175 24 N -0.114 5.114 25 C -0.059 4.059 26 C -0.027 4.027 27 C -0.129 4.129 28 C -0.143 4.143 29 C -0.137 4.137 30 C -0.143 4.143 31 C -0.129 4.129 32 H 0.241 0.759 33 H 0.109 0.891 34 H -0.229 1.229 35 H -0.212 1.212 36 H 0.246 0.754 37 H 0.164 0.836 38 H 0.201 0.799 39 H 0.261 0.739 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.144 0.856 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.140 0.860 50 H 0.162 0.838 51 H 0.165 0.835 52 H 0.162 0.838 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.368 5.614 -6.598 8.672 hybrid contribution -0.291 0.877 0.962 1.334 sum -0.659 6.492 -5.636 8.622 Atomic orbital electron populations 1.86480 1.17716 1.82314 1.49993 1.24739 0.84847 1.10693 0.95074 0.94119 0.76834 0.73125 0.85192 1.20653 1.14673 0.92415 1.00416 1.22889 0.97870 0.96937 0.88795 1.48150 1.47090 1.03560 1.15334 1.22037 0.92348 1.04837 0.82093 1.21182 0.85651 0.82222 0.82540 1.90843 1.71705 1.42617 1.38956 1.45394 1.23823 1.48630 1.16988 1.21622 0.83852 0.94543 0.98044 0.89730 1.23133 0.99832 0.95732 0.95778 1.25120 0.95204 1.03743 0.97829 0.85037 1.85712 1.22936 1.06511 1.73994 1.21894 0.98752 0.97069 1.03190 1.21402 1.00355 0.92989 1.01503 1.21430 0.96503 0.96387 0.98359 1.21555 0.95095 1.00418 0.98333 1.21406 1.00575 0.92195 0.98779 1.20995 0.95153 0.97721 1.00764 1.23704 0.98457 1.01671 0.93664 1.77704 1.19257 1.04207 1.10240 1.20815 0.98481 0.93704 0.92880 1.17980 0.98865 0.93838 0.91971 1.21240 1.00006 0.99510 0.92167 1.21373 0.97980 0.94446 1.00535 1.21564 0.97740 0.98409 0.96012 1.21388 1.00091 0.99126 0.93645 1.21280 0.97620 0.93924 1.00043 0.75916 0.89133 1.22901 1.21248 0.75431 0.83625 0.79875 0.73902 0.88044 0.87491 0.84366 0.83529 0.83915 0.84022 0.85632 0.90184 0.88906 0.86019 0.83837 0.83510 0.83793 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.69 12.88 -148.98 -1.92 -3.61 16 2 C -0.04 -0.10 2.51 71.23 0.18 0.08 16 3 Si 0.80 -2.67 30.74 68.60 2.11 -0.56 16 4 C -0.27 -1.07 5.35 -19.95 -0.11 -1.17 16 5 C 0.08 -0.21 9.96 83.48 0.83 0.62 16 6 N -0.36 -0.40 3.40 -351.90 -1.20 -1.59 16 7 C 0.11 -0.99 6.99 85.63 0.60 -0.40 16 8 C 0.50 -0.55 7.86 87.66 0.69 0.14 16 9 O -0.56 -7.00 15.30 -3.02 -0.05 -7.05 16 10 N -0.69 5.50 5.26 -440.05 -2.32 3.18 16 11 C 0.13 -0.48 4.32 45.51 0.20 -0.28 16 12 H 0.08 0.25 7.46 -2.39 -0.02 0.23 16 13 C -0.11 0.70 7.42 31.12 0.23 0.93 16 14 C -0.09 0.52 2.89 31.12 0.09 0.61 16 15 H 0.13 -1.28 6.85 -2.38 -0.02 -1.30 16 16 S -0.14 -0.14 21.72 -56.49 -1.23 -1.36 16 17 C -0.10 -0.23 6.11 22.62 0.14 -0.09 16 18 C -0.14 0.11 9.32 22.41 0.21 0.32 16 19 C -0.11 0.21 10.04 22.25 0.22 0.43 16 20 C -0.13 0.16 10.04 22.30 0.22 0.38 16 21 C -0.11 -0.05 10.04 22.25 0.22 0.17 16 22 C -0.12 -0.36 9.79 22.41 0.22 -0.14 16 23 C -0.13 0.48 7.38 31.12 0.23 0.71 16 24 N -0.29 -3.29 11.67 -48.16 -0.56 -3.85 16 25 C 0.11 1.15 6.67 42.53 0.28 1.44 16 26 C -0.02 -0.29 5.74 -20.04 -0.12 -0.40 16 27 C -0.11 -1.07 8.89 22.48 0.20 -0.87 16 28 C -0.13 -0.81 10.03 22.24 0.22 -0.59 16 29 C -0.12 -0.61 10.04 22.31 0.22 -0.39 16 30 C -0.12 -0.80 10.03 22.24 0.22 -0.58 16 31 C -0.11 -1.11 9.78 22.48 0.22 -0.89 16 32 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 33 H 0.09 0.51 5.58 -2.39 -0.01 0.50 16 34 H -0.30 -1.38 7.11 99.48 0.71 -0.67 16 35 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 36 H 0.23 -3.21 6.40 -2.91 -0.02 -3.23 16 37 H 0.15 -2.03 8.14 -2.38 -0.02 -2.05 16 38 H 0.18 -3.71 8.07 -2.38 -0.02 -3.72 16 39 H 0.42 -6.82 8.70 -92.71 -0.81 -7.63 16 40 H 0.10 -0.50 8.10 -2.39 -0.02 -0.51 16 41 H 0.11 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.14 -0.74 5.64 -2.91 -0.02 -0.76 16 43 H 0.15 -1.01 8.06 -2.91 -0.02 -1.03 16 44 H 0.14 -0.76 8.06 -2.91 -0.02 -0.79 16 45 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 46 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 47 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.09 -0.06 8.10 -2.39 -0.02 -0.08 16 49 H 0.12 0.99 6.22 -2.92 -0.02 0.97 16 50 H 0.14 0.24 8.06 -2.91 -0.02 0.22 16 51 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 52 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 53 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -37.66 455.10 -0.17 -37.82 By element: Atomic # 1 Polarization: -22.57 SS G_CDS: -0.44 Total: -23.02 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.43 Total: 0.04 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -4.07 Total: -2.26 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.97 Total: -10.66 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.11 Total: -0.56 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.23 Total: -1.36 kcal Total: -37.66 -0.17 -37.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12622748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.024 kcal (2) G-P(sol) polarization free energy of solvation -37.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds