Wall clock time and date at job start Sat Mar 6 2021 19:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86300 * 109.47427 * 2 1 4 4 C 1.50704 * 109.47116 * 120.00195 * 2 1 3 5 5 C 1.34828 * 125.65400 * 64.96950 * 4 2 1 6 6 C 1.40797 * 107.05339 * 180.02562 * 5 4 2 7 7 C 1.36115 * 106.72767 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.93924 * 179.97438 * 7 6 5 9 9 C 1.39569 * 119.95450 * 179.72201 * 8 7 6 10 10 C 1.38318 * 119.81704 * 179.76774 * 9 8 7 11 11 O 1.35669 * 120.13977 * 180.25720 * 10 9 8 12 12 C 1.40368 * 119.72397 * 0.51195 * 10 9 8 13 13 C 1.47283 * 120.04842 * 179.72198 * 12 10 9 14 14 O 1.21627 * 120.00282 * 0.02562 * 13 12 10 15 15 N 1.34779 * 120.00397 * 180.02562 * 13 12 10 16 16 C 1.46497 * 120.00644 * 179.97438 * 15 13 12 17 17 H 1.09003 * 112.84404 * 23.81019 * 16 15 13 18 18 C 1.53776 * 113.61503 * 155.00043 * 16 15 13 19 19 C 1.53783 * 87.08050 * 89.12379 * 18 16 15 20 20 H 1.09002 * 113.61173 * 270.88300 * 19 18 16 21 21 S 1.81394 * 113.61847 * 140.06382 * 19 18 16 22 22 C 1.76197 * 103.00352 * 174.99466 * 21 19 18 23 23 C 1.38975 * 120.07640 * 359.73205 * 22 21 19 24 24 C 1.38087 * 119.91771 * 179.76273 * 23 22 21 25 25 C 1.38297 * 120.07966 * 0.48380 * 24 23 22 26 26 C 1.38305 * 120.16362 * 359.76715 * 25 24 23 27 27 C 1.38084 * 120.07837 * 359.97438 * 26 25 24 28 28 C 1.53777 * 87.08169 * 25.42863 * 19 18 16 29 29 C 1.39925 * 119.90616 * 359.74226 * 12 10 9 30 30 C 1.36388 * 120.18303 * 0.02562 * 29 12 10 31 31 O 1.34228 * 125.65131 * 244.97401 * 4 2 1 32 32 H 0.96706 * 114.00197 * 59.99937 * 1 2 3 33 33 H 1.09003 * 109.47143 * 239.99588 * 2 1 3 34 34 H 1.48498 * 109.99719 * 298.68004 * 3 2 1 35 35 H 1.48493 * 110.00034 * 59.99999 * 3 2 1 36 36 H 1.08003 * 126.47402 * 0.02607 * 5 4 2 37 37 H 1.07994 * 126.63968 * 180.26218 * 6 5 4 38 38 H 1.08008 * 120.09058 * 0.02562 * 9 8 7 39 39 H 0.96702 * 113.99962 * 270.25494 * 11 10 9 40 40 H 0.97000 * 119.99487 * 0.02562 * 15 13 12 41 41 H 1.09002 * 113.61248 * 203.66608 * 18 16 15 42 42 H 1.08993 * 113.61816 * 334.56965 * 18 16 15 43 43 H 1.07999 * 120.04240 * 359.97438 * 23 22 21 44 44 H 1.08002 * 119.96175 * 180.23385 * 24 23 22 45 45 H 1.08002 * 119.92316 * 179.74640 * 25 24 23 46 46 H 1.07997 * 119.96267 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.04167 * 179.97438 * 27 26 25 48 48 H 1.09000 * 113.62011 * 220.01883 * 28 19 18 49 49 H 1.09000 * 113.61297 * 89.12247 * 28 19 18 50 50 H 1.07997 * 119.90437 * 180.02562 * 29 12 10 51 51 H 1.08005 * 119.85556 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7562 -2.0179 1.5096 6 6 2.3797 -2.2628 2.7480 7 6 2.9067 -1.0782 3.1624 8 6 3.6550 -0.8538 4.4143 9 6 4.1472 0.4174 4.7136 10 6 4.8440 0.6257 5.8902 11 8 5.3209 1.8598 6.1902 12 6 5.0605 -0.4465 6.7699 13 6 5.8068 -0.2342 8.0218 14 8 6.2358 0.8709 8.2941 15 7 6.0146 -1.2644 8.8656 16 6 6.7574 -1.0534 10.1105 17 1 6.7312 -0.0174 10.4486 18 6 6.4145 -2.0698 11.2123 19 6 7.5310 -2.9551 10.6339 20 1 7.1898 -3.6321 9.8507 21 16 8.5275 -3.7881 11.9001 22 6 9.5957 -4.8179 10.9499 23 6 9.5045 -4.8246 9.5632 24 6 10.3466 -5.6293 8.8215 25 6 11.2732 -6.4353 9.4574 26 6 11.3633 -6.4352 10.8376 27 6 10.5281 -5.6292 11.5855 28 6 8.1690 -1.6632 10.0965 29 6 4.5665 -1.7174 6.4557 30 6 3.8757 -1.9174 5.2968 31 8 2.6271 -0.1465 2.2302 32 1 -0.3934 0.4417 -0.7651 33 1 1.7923 -0.5139 -0.8900 34 1 1.5879 2.4585 -1.2242 35 1 1.5616 2.4678 1.2084 36 1 1.2360 -2.7408 0.8986 37 1 2.4330 -3.2084 3.2669 38 1 3.9808 1.2373 4.0304 39 1 6.2141 2.0275 5.8597 40 1 5.6728 -2.1458 8.6482 41 1 6.6216 -1.7083 12.2196 42 1 5.4189 -2.5021 11.1131 43 1 8.7782 -4.1987 9.0661 44 1 10.2789 -5.6322 7.7436 45 1 11.9278 -7.0668 8.8750 46 1 12.0877 -7.0662 11.3308 47 1 10.5987 -5.6298 12.6632 48 1 8.5899 -1.7672 9.0964 49 1 8.8559 -1.1906 10.7986 50 1 4.7326 -2.5422 7.1328 51 1 3.4972 -2.9006 5.0594 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12807986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:46:03 Heat of formation + Delta-G solvation = 8.720733 kcal Electronic energy + Delta-G solvation = -36140.398130 eV Core-core repulsion = 31259.024978 eV Total energy + Delta-G solvation = -4881.373152 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.122 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.74866 -41.75475 -40.47354 -39.82004 -38.90909 -38.13720 -37.87216 -34.73407 -34.19041 -33.17595 -32.03538 -31.88212 -31.34371 -30.54988 -27.42188 -26.88484 -26.30689 -24.45740 -24.05251 -23.68167 -23.41992 -22.54011 -22.06918 -21.34979 -20.72639 -19.65643 -18.93375 -18.83121 -18.67359 -18.05722 -17.71151 -17.25671 -17.11892 -16.63587 -16.59569 -16.44959 -16.10349 -16.01664 -15.89269 -15.76865 -15.65726 -15.27127 -14.85997 -14.70192 -14.47142 -14.37700 -14.21725 -14.15193 -14.11384 -13.98760 -13.79355 -13.61721 -13.56606 -13.47306 -13.17360 -12.87131 -12.71675 -12.23487 -12.17270 -12.08199 -11.94499 -11.84672 -11.65369 -11.14190 -11.08362 -10.96292 -10.78215 -10.72527 -10.57393 -10.17823 -9.96625 -9.96077 -9.02080 -8.38912 -5.01397 -0.81051 0.13555 0.23691 0.39241 0.54664 0.61275 1.10747 1.33975 1.39686 1.43578 1.68541 1.88740 1.90280 1.94665 2.62548 2.74924 2.99455 3.23816 3.25964 3.29361 3.51547 3.59551 3.62006 3.70092 3.79211 3.80226 3.92765 3.98243 3.99777 4.01808 4.18612 4.22610 4.30773 4.39565 4.44125 4.48618 4.54652 4.60532 4.64940 4.68191 4.70117 4.74906 4.78293 4.80654 4.87303 4.88660 4.95244 5.04272 5.04912 5.10087 5.20748 5.28342 5.42828 5.43616 5.45190 5.52905 5.55879 5.95902 5.97583 6.41647 6.48448 6.69807 7.12527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.038 4.038 3 Si 0.756 3.244 4 C -0.016 4.016 5 C -0.181 4.181 6 C -0.170 4.170 7 C 0.002 3.998 8 C 0.027 3.973 9 C -0.155 4.155 10 C 0.162 3.838 11 O -0.496 6.496 12 C -0.178 4.178 13 C 0.561 3.439 14 O -0.559 6.559 15 N -0.696 5.696 16 C 0.126 3.874 17 H 0.095 0.905 18 C -0.106 4.106 19 C -0.094 4.094 20 H 0.127 0.873 21 S -0.132 6.132 22 C -0.096 4.096 23 C -0.140 4.140 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.133 4.133 29 C -0.050 4.050 30 C -0.109 4.109 31 O -0.180 6.180 32 H 0.406 0.594 33 H 0.132 0.868 34 H -0.260 1.260 35 H -0.315 1.315 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.135 0.865 39 H 0.409 0.591 40 H 0.415 0.585 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.127 0.873 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.173 0.827 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -7.430 -5.315 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.147 4.147 3 Si 0.660 3.340 4 C -0.066 4.066 5 C -0.200 4.200 6 C -0.189 4.189 7 C -0.047 4.047 8 C 0.026 3.974 9 C -0.173 4.173 10 C 0.116 3.884 11 O -0.309 6.309 12 C -0.182 4.182 13 C 0.350 3.650 14 O -0.438 6.438 15 N -0.349 5.349 16 C 0.018 3.982 17 H 0.113 0.887 18 C -0.145 4.145 19 C -0.223 4.223 20 H 0.145 0.855 21 S 0.114 5.886 22 C -0.209 4.209 23 C -0.163 4.163 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.129 4.129 27 C -0.146 4.146 28 C -0.174 4.174 29 C -0.068 4.068 30 C -0.127 4.127 31 O -0.078 6.078 32 H 0.258 0.742 33 H 0.149 0.851 34 H -0.185 1.185 35 H -0.244 1.244 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.153 0.847 39 H 0.270 0.730 40 H 0.253 0.747 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.145 0.855 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.191 0.809 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.854 -5.541 -3.048 6.382 hybrid contribution -0.716 -0.372 -1.948 2.109 sum 0.138 -5.914 -4.996 7.743 Atomic orbital electron populations 1.86517 1.17418 1.80791 1.51896 1.23951 0.84589 1.11942 0.94210 0.93816 0.90642 0.72464 0.77034 1.21854 1.00074 0.93247 0.91427 1.21842 1.03801 0.95822 0.98574 1.22261 1.00671 0.98968 0.96987 1.20616 1.04971 0.87973 0.91112 1.17961 0.95188 0.94033 0.90222 1.21573 1.01131 0.97660 0.96981 1.18473 0.94571 0.84190 0.91177 1.84733 1.37352 1.28517 1.80278 1.20476 1.05614 0.95310 0.96809 1.18183 0.79031 0.84168 0.83625 1.90836 1.51725 1.25277 1.75951 1.45419 1.56570 1.12384 1.20498 1.21710 0.91836 1.00262 0.84389 0.88716 1.23153 0.98403 0.93962 0.98994 1.25133 0.99206 0.98093 0.99875 0.85507 1.85647 1.39737 1.48622 1.14560 1.21897 1.00813 1.01242 0.96903 1.21392 1.01426 1.01486 0.92044 1.21414 0.94910 0.95407 1.01021 1.21544 0.99285 0.99710 0.94854 1.21404 0.98627 0.98300 0.94553 1.21002 0.96075 0.97133 1.00360 1.23720 0.96972 0.94159 1.02556 1.21165 0.93878 0.95110 0.96648 1.21055 0.99299 0.99349 0.92987 1.83912 1.58305 1.38742 1.26806 0.74187 0.85065 1.18538 1.24356 0.81327 0.79727 0.84688 0.73047 0.74650 0.87490 0.87744 0.84600 0.83756 0.83943 0.83952 0.85490 0.90389 0.88245 0.80935 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.29 12.86 -148.98 -1.92 -2.20 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.76 -0.44 32.11 68.60 2.20 1.76 16 4 C -0.02 -0.05 6.24 24.90 0.16 0.10 16 5 C -0.18 -0.18 10.78 22.11 0.24 0.06 16 6 C -0.17 0.12 10.26 22.40 0.23 0.35 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.09 16 9 C -0.15 -0.58 9.65 22.61 0.22 -0.36 16 10 C 0.16 0.79 6.71 22.81 0.15 0.95 16 11 O -0.50 -3.70 11.56 -68.87 -0.80 -4.50 16 12 C -0.18 -0.22 5.89 -19.97 -0.12 -0.34 16 13 C 0.56 2.11 7.75 86.62 0.67 2.78 16 14 O -0.56 -7.05 14.74 16.88 0.25 -6.80 16 15 N -0.70 2.66 5.21 -443.44 -2.31 0.35 16 16 C 0.13 -0.33 4.32 45.52 0.20 -0.13 16 17 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 18 C -0.11 0.63 7.42 31.12 0.23 0.86 16 19 C -0.09 0.45 2.89 31.12 0.09 0.54 16 20 H 0.13 -1.01 6.85 -2.39 -0.02 -1.02 16 21 S -0.13 -0.16 21.72 -56.49 -1.23 -1.39 16 22 C -0.10 -0.28 6.11 22.62 0.14 -0.14 16 23 C -0.14 -0.03 9.32 22.41 0.21 0.18 16 24 C -0.11 0.10 10.04 22.25 0.22 0.32 16 25 C -0.13 0.08 10.04 22.30 0.22 0.30 16 26 C -0.11 -0.08 10.04 22.25 0.22 0.14 16 27 C -0.12 -0.38 9.79 22.41 0.22 -0.16 16 28 C -0.13 0.39 7.38 31.12 0.23 0.62 16 29 C -0.05 0.31 9.47 22.25 0.21 0.52 16 30 C -0.11 0.58 9.48 22.26 0.21 0.80 16 31 O -0.18 -1.01 8.79 -5.92 -0.05 -1.06 16 32 H 0.41 -3.49 8.74 -74.05 -0.65 -4.13 16 33 H 0.13 -1.09 7.96 -2.39 -0.02 -1.11 16 34 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 35 H -0.32 -3.24 7.11 99.48 0.71 -2.53 16 36 H 0.17 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.19 -1.41 7.24 -2.91 -0.02 -1.43 16 38 H 0.14 0.58 7.90 -2.91 -0.02 0.56 16 39 H 0.41 0.01 9.06 -74.06 -0.67 -0.66 16 40 H 0.41 -4.44 6.71 -92.71 -0.62 -5.06 16 41 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 42 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.14 -0.51 5.64 -2.91 -0.02 -0.52 16 44 H 0.14 -0.79 8.06 -2.91 -0.02 -0.81 16 45 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 46 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 47 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 48 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.10 -0.12 8.10 -2.39 -0.02 -0.14 16 50 H 0.17 -2.49 6.38 -2.91 -0.02 -2.51 16 51 H 0.17 -1.99 6.96 -2.91 -0.02 -2.01 16 Total: 0.00 -29.39 444.31 -0.50 -29.89 By element: Atomic # 1 Polarization: -22.93 SS G_CDS: -0.87 Total: -23.80 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.22 Total: 7.75 kcal Atomic # 7 Polarization: 2.66 SS G_CDS: -2.31 Total: 0.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -2.51 Total: -14.56 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: 2.20 Total: 1.76 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.23 Total: -1.39 kcal Total: -29.39 -0.50 -29.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12807986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.614 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds