Wall clock time and date at job start Sat Mar 6 2021 19:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39291 * 121.02908 * 2 1 4 4 C 1.46494 * 134.20414 * 359.84912 * 3 2 1 5 5 C 1.50701 * 126.59564 * 0.38309 * 4 3 2 6 6 O 1.42897 * 109.47435 * 74.99684 * 5 4 3 7 7 Si 1.86299 * 109.47129 * 195.00138 * 5 4 3 8 8 C 1.34177 * 106.80515 * 180.40556 * 4 3 2 9 9 N 1.36952 * 109.95219 * 359.97438 * 8 4 3 10 10 C 1.37161 * 110.10865 * 0.02562 * 9 8 4 11 11 N 1.32821 * 132.95683 * 179.97438 * 10 9 8 12 12 C 1.31310 * 121.88590 * 180.02562 * 11 10 9 13 13 C 1.39748 * 121.03402 * 179.72832 * 2 1 3 14 14 C 1.47665 * 120.44861 * 0.02562 * 13 2 1 15 15 O 1.21573 * 120.00573 * 353.76534 * 14 13 2 16 16 N 1.34782 * 119.99639 * 173.76220 * 14 13 2 17 17 C 1.46503 * 119.99855 * 179.97438 * 16 14 13 18 18 H 1.09004 * 112.90744 * 23.75454 * 17 16 14 19 19 C 1.53786 * 113.61234 * 155.00184 * 17 16 14 20 20 C 1.53780 * 87.07682 * 89.11631 * 19 17 16 21 21 H 1.08988 * 113.61979 * 270.79790 * 20 19 17 22 22 S 1.81406 * 113.60895 * 139.97853 * 20 19 17 23 23 C 1.76203 * 102.99863 * 176.53032 * 22 20 19 24 24 C 1.38973 * 120.07975 * 180.02562 * 23 22 20 25 25 C 1.38084 * 119.91820 * 179.74343 * 24 23 22 26 26 C 1.38298 * 120.07872 * 0.23890 * 25 24 23 27 27 C 1.38299 * 120.16533 * 359.97438 * 26 25 24 28 28 C 1.38082 * 120.07822 * 0.04744 * 27 26 25 29 29 C 1.53781 * 87.17609 * 25.39127 * 20 19 17 30 30 H 1.08991 * 109.47227 * 263.99007 * 1 2 3 31 31 H 1.09004 * 109.46897 * 23.98533 * 1 2 3 32 32 H 1.08992 * 109.46965 * 143.98802 * 1 2 3 33 33 H 1.09005 * 109.47109 * 314.99793 * 5 4 3 34 34 H 0.96708 * 113.99430 * 59.99713 * 6 5 4 35 35 H 1.48495 * 110.00236 * 179.97438 * 7 5 4 36 36 H 1.48504 * 109.99680 * 301.31833 * 7 5 4 37 37 H 1.07998 * 125.02322 * 180.02562 * 8 4 3 38 38 H 0.96992 * 124.94480 * 180.02562 * 9 8 4 39 39 H 1.07998 * 119.31417 * 179.97438 * 12 11 10 40 40 H 0.96995 * 120.00069 * 0.02562 * 16 14 13 41 41 H 1.08996 * 113.61215 * 334.57158 * 19 17 16 42 42 H 1.08998 * 113.61293 * 203.66976 * 19 17 16 43 43 H 1.07997 * 120.04010 * 0.02883 * 24 23 22 44 44 H 1.08000 * 119.95845 * 180.25237 * 25 24 23 45 45 H 1.08005 * 119.91897 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.96252 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.04395 * 179.97438 * 28 27 26 48 48 H 1.09008 * 113.61500 * 89.15266 * 29 20 19 49 49 H 1.08996 * 113.61911 * 220.05819 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1936 0.0000 4 6 1.8516 2.6101 -0.0028 5 6 0.4527 3.1705 0.0014 6 8 -0.1137 3.0279 1.3055 7 14 0.5052 4.9750 -0.4590 8 6 2.9948 3.3126 -0.0102 9 7 4.0669 2.4605 -0.0119 10 6 3.6347 1.1588 -0.0060 11 7 4.2721 -0.0065 -0.0053 12 6 3.6267 -1.1500 0.0006 13 6 2.2275 -1.1974 0.0057 14 6 1.5225 -2.4949 0.0113 15 8 0.3126 -2.5289 0.1253 16 7 2.2204 -3.6416 -0.1101 17 6 1.5211 -4.9289 -0.1040 18 1 0.4772 -4.8461 -0.4066 19 6 2.2858 -6.0487 -0.8294 20 6 2.9640 -6.3504 0.5174 21 1 3.8794 -5.7824 0.6822 22 16 3.1652 -8.1225 0.8487 23 6 4.0439 -8.1429 2.3759 24 6 4.3902 -9.3534 2.9641 25 6 5.0834 -9.3655 4.1583 26 6 5.4288 -8.1749 4.7713 27 6 5.0820 -6.9683 4.1911 28 6 4.3884 -6.9485 2.9973 29 6 1.7269 -5.7342 1.1918 30 1 -0.3633 -0.1076 1.0219 31 1 -0.3633 0.9390 -0.4178 32 1 -0.3633 -0.8312 -0.6042 33 1 -0.1579 2.6288 -0.7211 34 1 0.3791 3.4855 2.0005 35 1 -0.8684 5.5393 -0.4591 36 1 1.3605 5.7191 0.5002 37 1 3.0598 4.3907 -0.0135 38 1 4.9965 2.7373 -0.0166 39 1 4.1869 -2.0734 0.0005 40 1 3.1858 -3.6145 -0.2008 41 1 2.9734 -5.6844 -1.5926 42 1 1.6448 -6.8551 -1.1859 43 1 4.1214 -10.2835 2.4856 44 1 5.3564 -10.3058 4.6139 45 1 5.9713 -8.1873 5.7051 46 1 5.3537 -6.0405 4.6725 47 1 4.1175 -6.0059 2.5449 48 1 0.9328 -6.4545 1.3890 49 1 1.9639 -5.1164 2.0579 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_12890568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:46:07 Heat of formation + Delta-G solvation = 74.513818 kcal Electronic energy + Delta-G solvation = -33367.895805 eV Core-core repulsion = 28968.576739 eV Total energy + Delta-G solvation = -4399.319066 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.87443 -41.37566 -39.87855 -39.62355 -38.60764 -37.82292 -35.19828 -34.48158 -32.08001 -31.93830 -31.90073 -30.99196 -28.97545 -26.94919 -26.80859 -26.23305 -24.71384 -24.00683 -23.68466 -23.38256 -22.10787 -20.71228 -20.69092 -19.42290 -18.83935 -18.70064 -17.88799 -17.59541 -17.52781 -17.00490 -16.67433 -16.62723 -16.38146 -16.06664 -15.85697 -15.79191 -15.55591 -15.41206 -15.06496 -14.90407 -14.67556 -14.42861 -14.28429 -14.08597 -14.03570 -13.78145 -13.70185 -13.63452 -13.56491 -13.35023 -13.19327 -13.02566 -12.47300 -12.23447 -12.08740 -11.87131 -11.79678 -11.65595 -11.31803 -11.16439 -11.06945 -10.74254 -10.58520 -10.27924 -10.18754 -9.98191 -9.64329 -9.13977 -8.39414 -4.84472 -0.36453 -0.09373 0.21763 0.37174 0.54457 1.34792 1.38855 1.40642 1.61872 1.67478 1.75494 1.96060 2.04722 2.72734 2.73374 3.26112 3.28892 3.31082 3.43811 3.55272 3.60557 3.65142 3.70385 3.72139 3.80868 3.91145 3.99974 4.12147 4.20368 4.24663 4.28385 4.37084 4.45995 4.46420 4.52756 4.59189 4.65939 4.67579 4.70576 4.76365 4.77862 4.80814 4.88365 4.95068 5.00718 5.02374 5.18461 5.24417 5.26479 5.37009 5.41567 5.49773 5.53680 5.72179 5.93805 6.20642 6.41126 6.58884 6.81589 7.12165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.064 3.936 3 C -0.165 4.165 4 C -0.196 4.196 5 C -0.059 4.059 6 O -0.549 6.549 7 Si 0.779 3.221 8 C 0.090 3.910 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.181 3.819 13 C -0.241 4.241 14 C 0.575 3.425 15 O -0.561 6.561 16 N -0.697 5.697 17 C 0.128 3.872 18 H 0.101 0.899 19 C -0.104 4.104 20 C -0.096 4.096 21 H 0.124 0.876 22 S -0.129 6.129 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.134 4.134 27 C -0.110 4.110 28 C -0.141 4.141 29 C -0.136 4.136 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.385 0.615 35 H -0.308 1.308 36 H -0.260 1.260 37 H 0.220 0.780 38 H 0.438 0.562 39 H 0.193 0.807 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.134 0.866 48 H 0.100 0.900 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 4.210 -2.042 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.055 3.945 3 C -0.172 4.172 4 C -0.203 4.203 5 C -0.167 4.167 6 O -0.357 6.357 7 Si 0.682 3.318 8 C -0.037 4.037 9 N -0.166 5.166 10 C 0.056 3.944 11 N -0.229 5.229 12 C 0.012 3.988 13 C -0.248 4.248 14 C 0.364 3.636 15 O -0.441 6.441 16 N -0.349 5.349 17 C 0.021 3.979 18 H 0.119 0.881 19 C -0.143 4.143 20 C -0.225 4.225 21 H 0.142 0.858 22 S 0.117 5.883 23 C -0.209 4.209 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.129 4.129 28 C -0.164 4.164 29 C -0.176 4.176 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.234 0.766 35 H -0.237 1.237 36 H -0.185 1.185 37 H 0.236 0.764 38 H 0.280 0.720 39 H 0.210 0.790 40 H 0.251 0.749 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.162 0.838 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.152 0.848 48 H 0.119 0.881 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.099 3.891 -2.833 7.012 hybrid contribution 0.383 0.466 2.183 2.265 sum 5.482 4.357 -0.651 7.033 Atomic orbital electron populations 1.21004 0.89358 1.03452 1.03024 1.20064 0.97017 0.90185 0.87211 1.19730 0.93233 0.94379 1.09831 1.20707 0.96089 0.90281 1.13248 1.24794 0.90680 1.13652 0.87564 1.86609 1.55100 1.76618 1.17401 0.94132 0.79171 0.70186 0.88352 1.22321 0.84010 0.97200 1.00164 1.41609 1.10605 1.01753 1.62659 1.18767 0.89498 0.86829 0.99346 1.66513 1.40846 0.96473 1.19062 1.22938 0.89646 0.95284 0.90923 1.20457 0.95397 0.93225 1.15706 1.17962 0.86405 0.83835 0.75387 1.90758 1.15094 1.87442 1.50781 1.45416 1.11116 1.04237 1.74144 1.21754 0.97818 0.81757 0.96580 0.88128 1.23145 0.99206 0.97468 0.94509 1.25144 1.01911 0.93459 1.01995 0.85837 1.85590 1.69000 1.11329 1.22349 1.21913 1.02820 0.96913 0.99257 1.21008 1.00077 0.96597 0.96726 1.21409 0.97176 0.99546 0.94689 1.21534 1.00495 0.92378 1.00994 1.21397 0.97247 0.99226 0.95079 1.21382 1.01058 0.96802 0.97173 1.23772 0.96887 0.99095 0.97884 0.91209 0.90619 0.89755 0.87067 0.76643 1.23656 1.18491 0.76383 0.72045 0.79048 0.74889 0.87735 0.87261 0.85306 0.83817 0.83968 0.84054 0.84818 0.88121 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 8.68 71.24 0.62 -0.25 16 2 C 0.06 0.43 5.98 -19.24 -0.12 0.32 16 3 C -0.16 -0.77 6.16 -20.19 -0.12 -0.89 16 4 C -0.20 0.14 5.57 -18.64 -0.10 0.03 16 5 C -0.06 0.07 2.08 71.24 0.15 0.22 16 6 O -0.55 -1.34 12.88 -148.98 -1.92 -3.26 16 7 Si 0.78 -4.29 30.83 68.60 2.11 -2.17 16 8 C 0.09 -0.56 10.44 82.97 0.87 0.31 16 9 N -0.56 2.20 6.04 -192.25 -1.16 1.04 16 10 C 0.29 0.93 8.42 134.02 1.13 2.06 16 11 N -0.52 -1.91 10.37 -191.75 -1.99 -3.90 16 12 C 0.18 0.10 10.67 85.20 0.91 1.01 16 13 C -0.24 -1.01 5.89 -19.99 -0.12 -1.13 16 14 C 0.58 2.63 7.72 86.73 0.67 3.30 16 15 O -0.56 -6.56 13.10 -3.95 -0.05 -6.61 16 16 N -0.70 1.90 5.21 -442.77 -2.31 -0.41 16 17 C 0.13 -0.30 4.33 45.58 0.20 -0.10 16 18 H 0.10 0.15 7.47 -2.38 -0.02 0.13 16 19 C -0.10 0.58 7.42 31.12 0.23 0.81 16 20 C -0.10 0.35 2.85 31.12 0.09 0.44 16 21 H 0.12 -0.75 6.97 -2.39 -0.02 -0.77 16 22 S -0.13 -0.27 21.72 -56.49 -1.23 -1.50 16 23 C -0.10 -0.40 6.11 22.62 0.14 -0.26 16 24 C -0.12 -0.49 9.79 22.41 0.22 -0.27 16 25 C -0.11 -0.19 10.04 22.25 0.22 0.03 16 26 C -0.13 -0.12 10.04 22.30 0.22 0.11 16 27 C -0.11 -0.11 10.04 22.25 0.22 0.11 16 28 C -0.14 -0.29 9.32 22.41 0.21 -0.09 16 29 C -0.14 0.26 7.29 31.18 0.23 0.48 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.43 5.06 -2.39 -0.01 0.42 16 32 H 0.08 0.85 5.96 -2.39 -0.01 0.83 16 33 H 0.11 -0.04 6.03 -2.38 -0.01 -0.05 16 34 H 0.38 -1.46 8.70 -74.05 -0.64 -2.11 16 35 H -0.31 -1.17 7.11 99.48 0.71 -0.46 16 36 H -0.26 1.33 7.00 99.48 0.70 2.02 16 37 H 0.22 -3.06 6.28 -2.91 -0.02 -3.07 16 38 H 0.44 -4.09 8.96 -92.71 -0.83 -4.92 16 39 H 0.19 -1.48 6.43 -2.91 -0.02 -1.49 16 40 H 0.41 -3.56 6.78 -92.71 -0.63 -4.19 16 41 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.11 -0.57 8.10 -2.39 -0.02 -0.59 16 43 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 44 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 45 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 46 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 47 H 0.13 -0.18 5.56 -2.91 -0.02 -0.20 16 48 H 0.10 -0.04 8.10 -2.38 -0.02 -0.06 16 49 H 0.07 -0.05 8.09 -2.39 -0.02 -0.07 16 Total: 0.00 -24.67 410.09 -1.70 -26.37 By element: Atomic # 1 Polarization: -14.77 SS G_CDS: -1.02 Total: -15.79 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.86 Total: 6.23 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -5.46 Total: -3.27 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -1.97 Total: -9.88 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.11 Total: -2.17 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.23 Total: -1.50 kcal Total: -24.67 -1.70 -26.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_12890568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.885 kcal (2) G-P(sol) polarization free energy of solvation -24.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds