Wall clock time and date at job start Sat Mar 6 2021 19:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38975 * 119.95431 * 2 1 4 4 O 1.35705 * 119.91445 * 0.02562 * 3 2 1 5 5 C 1.39021 * 120.17563 * 180.02562 * 3 2 1 6 6 C 1.50697 * 119.95837 * 180.02562 * 5 3 2 7 7 O 1.42893 * 109.46933 * 75.02057 * 6 5 3 8 8 Si 1.86294 * 109.47078 * 195.02258 * 6 5 3 9 9 C 1.37690 * 120.08542 * 0.04293 * 5 3 2 10 10 C 1.39757 * 119.91159 * 359.97438 * 9 5 3 11 11 C 1.47603 * 120.08308 * 180.02562 * 10 9 5 12 12 O 1.21573 * 120.00415 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99422 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99683 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85025 * 23.80911 * 14 13 11 16 16 C 1.53779 * 113.61301 * 154.99921 * 14 13 11 17 17 C 1.53787 * 87.07963 * 89.11687 * 16 14 13 18 18 H 1.08994 * 113.61447 * 270.88515 * 17 16 14 19 19 S 1.81404 * 113.61330 * 139.97814 * 17 16 14 20 20 C 1.76196 * 102.99963 * 175.00166 * 19 17 16 21 21 C 1.38977 * 120.07839 * 359.73022 * 20 19 17 22 22 C 1.38083 * 119.91827 * 179.76604 * 21 20 19 23 23 C 1.38308 * 120.07919 * 0.48050 * 22 21 20 24 24 C 1.38302 * 120.15857 * 359.77356 * 23 22 21 25 25 C 1.38080 * 120.08259 * 359.97438 * 24 23 22 26 26 C 1.53779 * 113.61564 * 252.49989 * 14 13 11 27 27 C 1.37723 * 119.95357 * 180.32393 * 2 1 3 28 28 H 1.08993 * 109.47505 * 89.99887 * 1 2 3 29 29 H 1.09000 * 109.47413 * 210.00309 * 1 2 3 30 30 H 1.09008 * 109.47102 * 329.99900 * 1 2 3 31 31 H 0.96694 * 114.00575 * 269.97656 * 4 3 2 32 32 H 1.09002 * 109.47205 * 315.02199 * 6 5 3 33 33 H 0.96700 * 114.00778 * 60.00153 * 7 6 5 34 34 H 1.48494 * 110.00554 * 58.68085 * 8 6 5 35 35 H 1.48504 * 110.00169 * 180.02562 * 8 6 5 36 36 H 1.08004 * 120.04104 * 180.02562 * 9 5 3 37 37 H 0.96996 * 119.99920 * 0.02562 * 13 11 10 38 38 H 1.08997 * 113.61646 * 334.57319 * 16 14 13 39 39 H 1.09000 * 113.61527 * 203.66590 * 16 14 13 40 40 H 1.07994 * 120.04195 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.96231 * 180.23037 * 22 21 20 42 42 H 1.07999 * 119.91713 * 179.74520 * 23 22 21 43 43 H 1.08001 * 119.95483 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.03991 * 179.97438 * 25 24 23 45 45 H 1.09002 * 113.61557 * 156.33711 * 26 14 13 46 46 H 1.09004 * 113.61501 * 25.43131 * 26 14 13 47 47 H 1.07997 * 120.04723 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5911 1.2095 -0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2730 3.1034 1.3019 8 14 6.1194 2.2161 -0.4561 9 6 4.2859 0.0208 -0.0020 10 6 3.5918 -1.1922 -0.0023 11 6 4.3328 -2.4688 -0.0033 12 8 5.5485 -2.4660 -0.0042 13 7 3.6615 -3.6375 -0.0031 14 6 4.3969 -4.9046 -0.0046 15 1 5.4047 -4.8095 0.3997 16 6 3.6024 -6.0787 0.5912 17 6 3.0616 -6.3295 -0.8265 18 1 2.1495 -5.7764 -1.0500 19 16 2.9457 -8.0873 -1.2595 20 6 2.1723 -8.0554 -2.8423 21 6 1.8186 -6.8420 -3.4204 22 6 1.2170 -6.8206 -4.6631 23 6 0.9575 -8.0052 -5.3281 24 6 1.3034 -9.2148 -4.7536 25 6 1.9099 -9.2436 -3.5135 26 6 4.3382 -5.6494 -1.3487 27 6 2.1946 -1.1933 -0.0067 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.3222 2.7184 -0.8826 32 1 3.8873 3.1946 -0.7257 33 1 4.6571 2.5551 1.9997 34 1 6.1998 1.5782 -1.7947 35 1 6.8677 3.4988 -0.4585 36 1 5.3659 0.0258 -0.0020 37 1 2.6915 -3.6397 -0.0027 38 1 2.8361 -5.7710 1.3026 39 1 4.2315 -6.8853 0.9676 40 1 2.0169 -5.9169 -2.8997 41 1 0.9452 -5.8779 -5.1146 42 1 0.4832 -7.9856 -6.2982 43 1 1.0989 -10.1378 -5.2756 44 1 2.1794 -10.1886 -3.0653 45 1 5.1685 -6.3386 -1.5027 46 1 4.1659 -4.9950 -2.2034 47 1 1.6547 -2.1285 -0.0116 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_13287732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:46:37 Heat of formation + Delta-G solvation = -22.299823 kcal Electronic energy + Delta-G solvation = -30338.925512 eV Core-core repulsion = 26159.567822 eV Total energy + Delta-G solvation = -4179.357691 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.123 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.84212 -40.89135 -39.85339 -39.28770 -37.85787 -37.48351 -34.61167 -33.94968 -32.09400 -31.90851 -31.65215 -28.00903 -27.15878 -26.88421 -26.55606 -24.70758 -23.69551 -23.40395 -22.11954 -21.68325 -20.70379 -19.56749 -18.93106 -18.70330 -18.13970 -17.66460 -17.24109 -16.86864 -16.60757 -16.42997 -16.11277 -16.01531 -15.85415 -15.70714 -15.53101 -15.03045 -14.87472 -14.70231 -14.44732 -14.34458 -14.20932 -14.15245 -13.90035 -13.78949 -13.59577 -13.29812 -13.19522 -12.92876 -12.80903 -12.35637 -12.25090 -12.21396 -12.08999 -11.87762 -11.67798 -11.60859 -11.17899 -11.05093 -10.74300 -10.47164 -10.25604 -9.98598 -9.98019 -9.66980 -8.39589 -5.05587 -0.41730 0.06324 0.21636 0.37139 0.54127 1.20633 1.38759 1.53103 1.60072 1.84871 1.93211 2.54345 2.72808 3.09878 3.26208 3.29491 3.36736 3.51672 3.56665 3.67955 3.74014 3.78757 3.90970 3.99529 4.01512 4.15555 4.20459 4.31873 4.40278 4.46184 4.46657 4.52721 4.60559 4.65603 4.65899 4.73127 4.76357 4.76954 4.78974 4.87873 4.94341 5.02168 5.02930 5.07426 5.19253 5.26239 5.31337 5.41502 5.43904 5.53746 5.58295 5.93749 6.38368 6.68957 6.70591 7.07335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.121 4.121 3 C 0.154 3.846 4 O -0.496 6.496 5 C -0.159 4.159 6 C -0.052 4.052 7 O -0.548 6.548 8 Si 0.744 3.256 9 C -0.055 4.055 10 C -0.150 4.150 11 C 0.565 3.435 12 O -0.568 6.568 13 N -0.695 5.695 14 C 0.126 3.874 15 H 0.101 0.899 16 C -0.104 4.104 17 C -0.097 4.097 18 H 0.125 0.875 19 S -0.130 6.130 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.121 4.121 26 C -0.136 4.136 27 C -0.055 4.055 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.112 0.888 33 H 0.392 0.608 34 H -0.289 1.289 35 H -0.289 1.289 36 H 0.142 0.858 37 H 0.414 0.586 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.128 0.872 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -2.101 -0.549 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C 0.108 3.892 4 O -0.310 6.310 5 C -0.160 4.160 6 C -0.163 4.163 7 O -0.356 6.356 8 Si 0.650 3.350 9 C -0.073 4.073 10 C -0.153 4.153 11 C 0.354 3.646 12 O -0.448 6.448 13 N -0.347 5.347 14 C 0.018 3.982 15 H 0.119 0.881 16 C -0.143 4.143 17 C -0.225 4.225 18 H 0.143 0.857 19 S 0.117 5.883 20 C -0.209 4.209 21 C -0.164 4.164 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.145 4.145 26 C -0.176 4.176 27 C -0.073 4.073 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.270 0.730 32 H 0.130 0.870 33 H 0.242 0.758 34 H -0.216 1.216 35 H -0.216 1.216 36 H 0.160 0.840 37 H 0.253 0.747 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.146 0.854 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.681 -2.459 -0.072 4.427 hybrid contribution -1.221 1.217 -1.683 2.409 sum -4.901 -1.242 -1.754 5.352 Atomic orbital electron populations 1.20765 0.88404 1.04138 1.03593 1.20433 0.98261 0.91789 1.01692 1.18499 0.88817 0.85892 0.95949 1.84736 1.75527 1.35779 1.34938 1.20637 0.94223 0.95741 1.05393 1.24826 1.09101 0.93004 0.89385 1.86509 1.84832 1.47669 1.16573 0.93785 0.76115 0.80838 0.84271 1.21011 1.00073 0.90603 0.95631 1.19777 0.94231 0.92614 1.08643 1.18293 0.86798 0.84268 0.75281 1.90801 1.14968 1.87942 1.51064 1.45438 1.10742 1.04141 1.74415 1.21750 0.97280 0.82284 0.96867 0.88051 1.23153 1.00259 0.97155 0.93782 1.25155 1.02128 0.93535 1.01701 0.85749 1.85626 1.74294 1.11974 1.16409 1.21914 1.03204 0.96943 0.98877 1.21378 1.01351 0.96524 0.97116 1.21406 0.97640 0.99423 0.94415 1.21542 1.00403 0.92420 1.01081 1.21408 0.97380 0.99353 0.94723 1.21006 1.00645 0.96915 0.95907 1.23745 0.96879 0.98987 0.98031 1.21356 0.91749 0.98925 0.95278 0.89738 0.89586 0.91320 0.73029 0.87030 0.75824 1.21601 1.21608 0.84040 0.74703 0.87693 0.87288 0.84695 0.83915 0.83988 0.83900 0.85376 0.88090 0.90650 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.80 9.78 71.24 0.70 1.50 16 2 C -0.12 0.43 5.89 -19.81 -0.12 0.31 16 3 C 0.15 -0.05 6.66 22.63 0.15 0.10 16 4 O -0.50 0.38 11.84 -90.25 -1.07 -0.69 16 5 C -0.16 -0.09 5.27 -19.81 -0.10 -0.20 16 6 C -0.05 -0.05 2.37 71.23 0.17 0.12 16 7 O -0.55 -1.41 12.88 -148.98 -1.92 -3.33 16 8 Si 0.74 0.99 29.91 68.60 2.05 3.04 16 9 C -0.05 -0.06 8.20 22.51 0.18 0.12 16 10 C -0.15 0.09 5.88 -20.08 -0.12 -0.03 16 11 C 0.56 0.91 7.76 86.71 0.67 1.59 16 12 O -0.57 -5.49 15.94 -3.95 -0.06 -5.56 16 13 N -0.70 3.54 5.21 -443.14 -2.31 1.23 16 14 C 0.13 -0.52 4.32 45.52 0.20 -0.32 16 15 H 0.10 -0.03 7.46 -2.39 -0.02 -0.05 16 16 C -0.10 0.75 7.42 31.12 0.23 0.98 16 17 C -0.10 0.51 2.89 31.12 0.09 0.60 16 18 H 0.12 -1.00 6.85 -2.39 -0.02 -1.02 16 19 S -0.13 -0.10 21.72 -56.49 -1.23 -1.33 16 20 C -0.10 -0.27 6.11 22.62 0.14 -0.13 16 21 C -0.14 -0.06 9.32 22.41 0.21 0.15 16 22 C -0.11 0.06 10.04 22.25 0.22 0.28 16 23 C -0.13 0.04 10.04 22.30 0.22 0.27 16 24 C -0.11 -0.08 10.04 22.25 0.22 0.14 16 25 C -0.12 -0.36 9.79 22.41 0.22 -0.14 16 26 C -0.14 0.49 7.38 31.12 0.23 0.72 16 27 C -0.05 0.29 9.18 22.50 0.21 0.50 16 28 H 0.08 -0.78 8.14 -2.39 -0.02 -0.79 16 29 H 0.09 -0.84 8.09 -2.39 -0.02 -0.86 16 30 H 0.07 -0.31 7.52 -2.38 -0.02 -0.33 16 31 H 0.41 -3.75 9.06 -74.06 -0.67 -4.42 16 32 H 0.11 0.05 7.82 -2.39 -0.02 0.03 16 33 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 34 H -0.29 -2.01 7.11 99.48 0.71 -1.30 16 35 H -0.29 -2.23 7.11 99.48 0.71 -1.52 16 36 H 0.14 0.16 4.70 -2.91 -0.01 0.14 16 37 H 0.41 -4.65 6.72 -92.71 -0.62 -5.27 16 38 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 40 H 0.14 -0.46 5.64 -2.91 -0.02 -0.48 16 41 H 0.14 -0.70 8.06 -2.91 -0.02 -0.73 16 42 H 0.14 -0.63 8.06 -2.91 -0.02 -0.66 16 43 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 44 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 45 H 0.10 -0.20 8.10 -2.39 -0.02 -0.22 16 46 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.16 -2.03 6.39 -2.91 -0.02 -2.05 16 Total: 0.00 -22.76 401.87 -1.66 -24.42 By element: Atomic # 1 Polarization: -23.50 SS G_CDS: -0.85 Total: -24.36 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 3.73 Total: 6.57 kcal Atomic # 7 Polarization: 3.54 SS G_CDS: -2.31 Total: 1.23 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -3.05 Total: -9.58 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: 2.05 Total: 3.04 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.23 Total: -1.33 kcal Total: -22.76 -1.66 -24.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_13287732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.121 kcal (2) G-P(sol) polarization free energy of solvation -22.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds