Wall clock time and date at job start Sat Mar 6 2021 19:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86295 * 109.47203 * 2 1 4 4 C 1.50701 * 109.47203 * 240.00075 * 2 1 3 5 5 C 1.38352 * 120.35104 * 299.99701 * 4 2 1 6 6 C 1.40023 * 118.29084 * 179.97438 * 5 4 2 7 7 C 1.47843 * 120.55984 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00018 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00224 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00149 * 179.97438 * 9 7 6 11 11 H 1.08996 * 112.90649 * 23.75701 * 10 9 7 12 12 C 1.53777 * 113.61088 * 155.00452 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.11940 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 S 1.81401 * 113.61581 * 140.06322 * 13 12 10 16 16 C 1.76204 * 102.99907 * 176.53201 * 15 13 12 17 17 C 1.38976 * 120.07870 * 359.72153 * 16 15 13 18 18 C 1.38082 * 119.91819 * 179.76723 * 17 16 15 19 19 C 1.38311 * 120.07656 * 0.48885 * 18 17 16 20 20 C 1.38298 * 120.16294 * 359.76875 * 19 18 17 21 21 C 1.38085 * 120.07991 * 359.97438 * 20 19 18 22 22 C 1.53775 * 113.61823 * 252.50051 * 10 9 7 23 23 C 1.39518 * 118.88088 * 0.25049 * 6 5 4 24 24 N 1.31690 * 120.56630 * 359.45751 * 23 6 5 25 25 C 1.31928 * 121.88080 * 0.58794 * 24 23 6 26 26 H 0.96698 * 114.00083 * 299.99929 * 1 2 3 27 27 H 1.08999 * 109.47329 * 120.00464 * 2 1 3 28 28 H 1.48500 * 110.00566 * 178.67959 * 3 2 1 29 29 H 1.48502 * 110.00209 * 300.00391 * 3 2 1 30 30 H 1.07998 * 120.85402 * 359.96135 * 5 4 2 31 31 H 0.96999 * 120.00148 * 0.02562 * 9 7 6 32 32 H 1.08997 * 113.61941 * 334.56647 * 12 10 9 33 33 H 1.09005 * 113.61136 * 203.66812 * 12 10 9 34 34 H 1.08003 * 120.03859 * 0.02562 * 17 16 15 35 35 H 1.07994 * 119.96255 * 180.23465 * 18 17 16 36 36 H 1.08005 * 119.91616 * 179.74275 * 19 18 17 37 37 H 1.07994 * 119.95923 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.04104 * 179.97438 * 21 20 19 39 39 H 1.08993 * 113.61636 * 156.33149 * 22 10 9 40 40 H 1.09008 * 113.61006 * 25.43391 * 22 10 9 41 41 H 1.08002 * 119.71374 * 179.74359 * 23 6 5 42 42 H 1.07998 * 119.45965 * 179.70222 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6016 -2.0349 -1.4566 6 6 2.0914 -2.6524 -2.6140 7 6 1.7705 -4.0660 -2.9050 8 8 1.0758 -4.7021 -2.1367 9 7 2.2475 -4.6490 -4.0225 10 6 1.9300 -6.0499 -4.3105 11 1 1.0170 -6.3875 -3.8202 12 6 1.9915 -6.4003 -5.8066 13 6 3.4784 -6.7267 -5.5886 14 1 4.1379 -5.8695 -5.7236 15 16 4.0397 -8.1965 -6.4915 16 6 5.7639 -8.2480 -6.1320 17 6 6.3363 -7.2732 -5.3236 18 6 7.6869 -7.3194 -5.0401 19 6 8.4718 -8.3287 -5.5679 20 6 7.9066 -9.2974 -6.3770 21 6 6.5557 -9.2605 -6.6605 22 6 3.1210 -7.0035 -4.1187 23 6 2.8920 -1.9129 -3.4850 24 7 3.1736 -0.6523 -3.2286 25 6 2.7268 -0.0448 -2.1461 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5139 0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5614 2.4679 -1.2084 30 1 0.9826 -2.5786 -0.7583 31 1 2.8016 -4.1413 -4.6358 32 1 1.8236 -5.5461 -6.4625 33 1 1.3892 -7.2677 -6.0770 34 1 5.7247 -6.4827 -4.9143 35 1 8.1318 -6.5644 -4.4090 36 1 9.5287 -8.3600 -5.3478 37 1 8.5226 -10.0837 -6.7876 38 1 6.1150 -10.0172 -7.2928 39 1 2.8275 -8.0357 -3.9276 40 1 3.8650 -6.6361 -3.4118 41 1 3.2804 -2.3771 -4.3795 42 1 2.9858 0.9892 -1.9722 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:46:45 Heat of formation + Delta-G solvation = 38.257601 kcal Electronic energy + Delta-G solvation = -25879.019314 eV Core-core repulsion = 22111.081491 eV Total energy + Delta-G solvation = -3767.937824 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12527 -40.97302 -39.87348 -39.26899 -37.87574 -34.86763 -33.98767 -33.01774 -32.06595 -31.92265 -27.40120 -27.21899 -26.91516 -25.45011 -23.89403 -23.71637 -23.44037 -21.95314 -20.82647 -19.23083 -18.76527 -18.55874 -18.37737 -17.88794 -17.67425 -16.87240 -16.52737 -16.34677 -16.22389 -15.86697 -15.74570 -15.42180 -15.13972 -14.92681 -14.80279 -14.47161 -14.42740 -14.29884 -14.17604 -13.87622 -13.79163 -13.63682 -13.22978 -12.67552 -12.28117 -12.18707 -12.14481 -11.93662 -11.72306 -11.59298 -11.21969 -11.10279 -10.86949 -10.77667 -10.65650 -10.30847 -10.19179 -10.00385 -8.42317 -4.97853 -0.76403 -0.16451 0.19474 0.35007 0.50887 1.21460 1.35073 1.48732 1.63139 1.75778 1.91121 2.45036 2.70710 2.89670 3.15255 3.20979 3.23420 3.37431 3.54007 3.54969 3.61597 3.68681 3.75960 3.88409 3.97057 3.99349 4.12101 4.18436 4.38588 4.42651 4.44341 4.50397 4.60216 4.60887 4.65587 4.69992 4.74130 4.78637 4.82849 4.89164 4.99947 5.14346 5.24063 5.34189 5.39497 5.51706 5.91675 6.21069 6.44834 6.83959 6.89783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.080 4.080 3 Si 0.779 3.221 4 C -0.140 4.140 5 C 0.003 3.997 6 C -0.192 4.192 7 C 0.573 3.427 8 O -0.564 6.564 9 N -0.692 5.692 10 C 0.125 3.875 11 H 0.102 0.898 12 C -0.104 4.104 13 C -0.098 4.098 14 H 0.124 0.876 15 S -0.127 6.127 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.134 4.134 23 C 0.143 3.857 24 N -0.496 5.496 25 C 0.109 3.891 26 H 0.408 0.592 27 H 0.102 0.898 28 H -0.279 1.279 29 H -0.291 1.291 30 H 0.148 0.852 31 H 0.415 0.585 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.196 0.804 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 3.067 2.143 4.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.190 4.190 3 Si 0.684 3.316 4 C -0.143 4.143 5 C -0.023 4.023 6 C -0.197 4.197 7 C 0.360 3.640 8 O -0.443 6.443 9 N -0.344 5.344 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.143 4.143 13 C -0.227 4.227 14 H 0.142 0.858 15 S 0.120 5.880 16 C -0.210 4.210 17 C -0.164 4.164 18 C -0.130 4.130 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.175 4.175 23 C -0.015 4.015 24 N -0.203 5.203 25 C -0.046 4.046 26 H 0.260 0.740 27 H 0.119 0.881 28 H -0.205 1.205 29 H -0.218 1.218 30 H 0.166 0.834 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.213 0.787 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.474 2.628 0.409 3.041 hybrid contribution 0.653 -0.095 0.788 1.028 sum 2.127 2.533 1.197 3.518 Atomic orbital electron populations 1.86434 1.16838 1.82609 1.51649 1.24829 0.86311 1.11669 0.96178 0.93845 0.77692 0.74745 0.85359 1.20716 1.00048 0.94958 0.98535 1.21706 0.92589 0.93284 0.94764 1.21040 1.04296 0.95393 0.98942 1.18025 0.78940 0.85768 0.81286 1.90811 1.39285 1.65393 1.48822 1.45421 1.52936 1.12500 1.23540 1.21789 0.99031 0.80385 0.97054 0.88001 1.23154 0.92030 1.03836 0.95303 1.25148 1.00951 0.98198 0.98398 0.85825 1.85602 1.01066 1.36374 1.65004 1.21913 0.97509 0.99453 1.02106 1.21375 0.96440 0.98874 0.99743 1.21404 0.93393 0.98896 0.99273 1.21545 1.01191 0.94890 0.97751 1.21414 0.94412 0.99284 0.97692 1.21013 0.94278 0.98123 1.00976 1.23742 0.98225 1.01194 0.94318 1.23477 0.91156 0.88933 0.97976 1.67728 1.22377 1.11159 1.19086 1.22881 0.92984 0.99634 0.89114 0.74029 0.88063 1.20542 1.21795 0.83386 0.74622 0.87725 0.87068 0.84822 0.84027 0.83940 0.83791 0.85281 0.87848 0.90535 0.78719 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.91 12.75 -148.98 -1.90 -0.99 16 2 C -0.08 0.20 2.82 71.24 0.20 0.40 16 3 Si 0.78 -3.68 29.82 68.60 2.05 -1.64 16 4 C -0.14 -0.47 5.42 -19.81 -0.11 -0.58 16 5 C 0.00 0.01 9.31 22.73 0.21 0.23 16 6 C -0.19 -0.55 5.89 -19.99 -0.12 -0.66 16 7 C 0.57 2.14 7.78 86.79 0.68 2.82 16 8 O -0.56 -6.70 16.02 -3.89 -0.06 -6.77 16 9 N -0.69 2.42 5.22 -442.93 -2.31 0.11 16 10 C 0.12 -0.37 4.32 45.51 0.20 -0.18 16 11 H 0.10 0.09 7.46 -2.39 -0.02 0.07 16 12 C -0.10 0.64 7.41 31.12 0.23 0.87 16 13 C -0.10 0.42 2.86 31.12 0.09 0.51 16 14 H 0.12 -0.83 6.95 -2.39 -0.02 -0.85 16 15 S -0.13 -0.20 21.72 -56.49 -1.23 -1.43 16 16 C -0.10 -0.36 6.11 22.62 0.14 -0.22 16 17 C -0.14 -0.22 9.33 22.41 0.21 -0.01 16 18 C -0.11 -0.07 10.04 22.25 0.22 0.16 16 19 C -0.13 -0.07 10.04 22.30 0.22 0.16 16 20 C -0.11 -0.15 10.04 22.25 0.22 0.07 16 21 C -0.12 -0.44 9.79 22.41 0.22 -0.22 16 22 C -0.13 0.38 7.30 31.12 0.23 0.61 16 23 C 0.14 0.01 10.71 85.02 0.91 0.92 16 24 N -0.50 -2.37 10.35 -194.76 -2.01 -4.38 16 25 C 0.11 0.50 9.84 84.71 0.83 1.33 16 26 H 0.41 -5.00 8.74 -74.06 -0.65 -5.65 16 27 H 0.10 -0.66 7.96 -2.39 -0.02 -0.68 16 28 H -0.28 0.02 7.11 99.48 0.71 0.73 16 29 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 30 H 0.15 0.84 7.74 -2.91 -0.02 0.82 16 31 H 0.42 -3.98 6.77 -92.71 -0.63 -4.60 16 32 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.11 -0.65 8.10 -2.38 -0.02 -0.67 16 34 H 0.13 -0.27 5.60 -2.91 -0.02 -0.29 16 35 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 36 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 37 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 39 H 0.10 -0.16 8.10 -2.39 -0.02 -0.18 16 40 H 0.08 -0.15 8.13 -2.38 -0.02 -0.17 16 41 H 0.20 -1.64 6.42 -2.91 -0.02 -1.66 16 42 H 0.16 0.43 4.88 -2.91 -0.01 0.41 16 Total: 0.00 -22.82 366.36 -1.04 -23.86 By element: Atomic # 1 Polarization: -14.78 SS G_CDS: -0.16 Total: -14.94 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.59 Total: 6.18 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -4.33 Total: -4.28 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -1.96 Total: -7.76 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.05 Total: -1.64 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.23 Total: -1.43 kcal Total: -22.82 -1.04 -23.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.116 kcal (2) G-P(sol) polarization free energy of solvation -22.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds