Wall clock time and date at job start Sat Mar 6 2021 19:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47360 * 2 1 4 4 C 1.50701 * 109.47054 * 239.99853 * 2 1 3 5 5 C 1.33744 * 125.12155 * 300.00333 * 4 2 1 6 6 C 1.37795 * 115.08094 * 179.73411 * 5 4 2 7 7 C 1.34977 * 114.70274 * 359.97438 * 6 5 4 8 8 C 1.47563 * 125.27242 * 179.97438 * 7 6 5 9 9 C 1.39822 * 120.00248 * 359.72988 * 8 7 6 10 10 C 1.36563 * 119.99828 * 179.71885 * 9 8 7 11 11 C 1.39823 * 120.00115 * 0.55202 * 10 9 8 12 12 C 1.47561 * 120.00242 * 179.74126 * 11 10 9 13 13 O 1.21596 * 120.00182 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99786 * 359.97438 * 12 11 10 15 15 C 1.46501 * 119.99846 * 179.97438 * 14 12 11 16 16 H 1.08999 * 112.84911 * 334.67130 * 15 14 12 17 17 C 1.53780 * 113.61137 * 105.86336 * 15 14 12 18 18 C 1.54046 * 86.98652 * 89.16236 * 17 15 14 19 19 H 1.09003 * 113.61464 * 270.88300 * 18 17 15 20 20 S 1.81404 * 113.69665 * 139.98811 * 18 17 15 21 21 C 1.76199 * 102.99829 * 87.46745 * 20 18 17 22 22 C 1.38971 * 120.08275 * 359.72353 * 21 20 18 23 23 C 1.38081 * 119.91899 * 179.76386 * 22 21 20 24 24 C 1.38308 * 120.08243 * 0.49101 * 23 22 21 25 25 C 1.38309 * 120.15459 * 359.76675 * 24 23 22 26 26 C 1.38075 * 120.08440 * 359.97438 * 25 24 23 27 27 C 1.53777 * 113.61296 * 203.46833 * 15 14 12 28 28 C 1.39835 * 119.99793 * 359.72238 * 11 10 9 29 29 C 1.36556 * 119.99999 * 359.97438 * 28 11 10 30 30 S 1.75867 * 125.11846 * 119.69411 * 4 2 1 31 31 H 0.96699 * 113.99755 * 299.99920 * 1 2 3 32 32 H 1.08997 * 109.47741 * 119.99902 * 2 1 3 33 33 H 1.48495 * 110.00381 * 178.68674 * 3 2 1 34 34 H 1.48509 * 109.99684 * 300.00139 * 3 2 1 35 35 H 1.08002 * 122.45700 * 359.70809 * 5 4 2 36 36 H 1.08005 * 122.64364 * 179.97438 * 6 5 4 37 37 H 1.07997 * 119.99647 * 359.97438 * 9 8 7 38 38 H 1.08006 * 119.99400 * 180.29419 * 10 9 8 39 39 H 0.96997 * 119.99723 * 359.97438 * 14 12 11 40 40 H 1.09007 * 113.61532 * 203.66481 * 17 15 14 41 41 H 1.08995 * 113.61943 * 334.56511 * 17 15 14 42 42 H 1.07994 * 120.04081 * 0.02562 * 22 21 20 43 43 H 1.07998 * 119.96283 * 180.22940 * 23 22 21 44 44 H 1.07999 * 119.92513 * 179.73948 * 24 23 22 45 45 H 1.08002 * 119.95522 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.04351 * 180.02562 * 26 25 24 47 47 H 1.08998 * 113.61160 * 25.43444 * 27 15 14 48 48 H 1.08996 * 113.61417 * 156.25137 * 27 15 14 49 49 H 1.08003 * 120.00112 * 180.02562 * 28 11 10 50 50 H 1.08001 * 120.00497 * 180.02562 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6720 -1.9848 -1.5429 6 6 2.2328 -2.4226 -2.7230 7 6 2.9580 -1.4939 -3.3816 8 6 3.6582 -1.7104 -4.6623 9 6 3.6042 -2.9607 -5.2860 10 6 4.2474 -3.1593 -6.4742 11 6 4.9696 -2.1158 -7.0612 12 6 5.6694 -2.3320 -8.3422 13 8 6.2970 -1.4244 -8.8530 14 7 5.6129 -3.5356 -8.9462 15 6 6.3072 -3.7502 -10.2182 16 1 6.4480 -2.8293 -10.7842 17 6 7.5859 -4.5943 -10.0873 18 6 6.6941 -5.8314 -10.3043 19 1 6.2832 -6.2408 -9.3814 20 16 7.4485 -7.0975 -11.3620 21 6 8.3680 -8.0728 -10.2185 22 6 8.3678 -7.7473 -8.8674 23 6 9.0857 -8.5169 -7.9735 24 6 9.8126 -9.6045 -8.4227 25 6 9.8193 -9.9282 -9.7673 26 6 9.0996 -9.1664 -10.6662 27 6 5.7230 -4.9026 -11.0521 28 6 5.0283 -0.8671 -6.4346 29 6 4.3800 -0.6667 -5.2496 30 16 2.9404 0.0136 -2.4756 31 1 -0.3933 0.4417 0.7651 32 1 1.7924 -0.5138 0.8899 33 1 3.5346 1.7703 0.0320 34 1 1.5615 2.4679 -1.2086 35 1 1.0678 -2.6239 -0.9160 36 1 2.1024 -3.4293 -3.0918 37 1 3.0504 -3.7680 -4.8302 38 1 4.2018 -4.1237 -6.9583 39 1 5.1125 -4.2597 -8.5385 40 1 8.3037 -4.4271 -10.8905 41 1 8.0393 -4.5494 -9.0971 42 1 7.8035 -6.8961 -8.5165 43 1 9.0831 -8.2668 -6.9229 44 1 10.3765 -10.2021 -7.7218 45 1 10.3884 -10.7779 -10.1146 46 1 9.1050 -9.4200 -11.7161 47 1 4.6735 -5.1065 -10.8402 48 1 5.9310 -4.8189 -12.1187 49 1 5.5858 -0.0609 -6.8882 50 1 4.4249 0.2978 -4.7657 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_13308390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:46:51 Heat of formation + Delta-G solvation = 62.426489 kcal Electronic energy + Delta-G solvation = -32892.150907 eV Core-core repulsion = 28455.859483 eV Total energy + Delta-G solvation = -4436.291424 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 424.095 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.70709 -40.43017 -39.85586 -39.37102 -38.79994 -37.41890 -34.78248 -33.45804 -32.31692 -32.05185 -31.91077 -30.63316 -27.63958 -26.92897 -26.40968 -24.71313 -24.07423 -23.72028 -23.53938 -23.29154 -21.98284 -20.78049 -20.20436 -19.22596 -18.75507 -18.60020 -18.35853 -17.76282 -17.16171 -17.07907 -16.52241 -16.39057 -16.19798 -16.10803 -15.84533 -15.68157 -15.61695 -15.37426 -15.01765 -14.89137 -14.70482 -14.54538 -14.39581 -14.36668 -14.18200 -14.16789 -13.83107 -13.64032 -13.43772 -13.28002 -13.21585 -13.16630 -12.69996 -12.40179 -12.26647 -12.18555 -12.12537 -11.91600 -11.85639 -11.69876 -11.25825 -11.08547 -10.89480 -10.75699 -10.37978 -10.28660 -10.24639 -9.99232 -9.73888 -9.13013 -8.41544 -5.27447 -0.99782 0.13600 0.20672 0.24313 0.30620 0.36235 0.51819 0.66377 1.15709 1.36262 1.43968 1.53714 1.85602 1.87037 1.89001 2.71810 2.72779 3.21377 3.25076 3.29146 3.38779 3.56249 3.61558 3.66238 3.73654 3.76908 3.81359 3.89652 3.98386 4.09935 4.19690 4.21608 4.32550 4.39224 4.42153 4.45549 4.46115 4.51463 4.52326 4.61312 4.64268 4.71467 4.75298 4.82632 4.83561 4.89891 4.91567 5.00756 5.01249 5.12330 5.18150 5.22471 5.25314 5.38888 5.39161 5.40728 5.52902 5.63476 5.92917 6.33867 6.83115 7.02306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.747 3.253 4 C -0.186 4.186 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.005 3.995 9 C -0.105 4.105 10 C -0.064 4.064 11 C -0.148 4.148 12 C 0.563 3.437 13 O -0.576 6.576 14 N -0.693 5.693 15 C 0.124 3.876 16 H 0.096 0.904 17 C -0.135 4.135 18 C -0.096 4.096 19 H 0.126 0.874 20 S -0.129 6.129 21 C -0.097 4.097 22 C -0.141 4.141 23 C -0.109 4.109 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.062 4.062 29 C -0.133 4.133 30 S 0.056 5.944 31 H 0.407 0.593 32 H 0.112 0.888 33 H -0.274 1.274 34 H -0.286 1.286 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.416 0.584 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.129 0.871 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.129 0.871 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -4.454 6.864 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.652 3.348 4 C -0.303 4.303 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.270 4.270 8 C 0.003 3.997 9 C -0.125 4.125 10 C -0.083 4.083 11 C -0.151 4.151 12 C 0.352 3.648 13 O -0.456 6.456 14 N -0.345 5.345 15 C 0.016 3.984 16 H 0.115 0.885 17 C -0.176 4.176 18 C -0.224 4.224 19 H 0.143 0.857 20 S 0.118 5.882 21 C -0.209 4.209 22 C -0.164 4.164 23 C -0.129 4.129 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.081 4.081 29 C -0.152 4.152 30 S 0.323 5.677 31 H 0.259 0.741 32 H 0.129 0.871 33 H -0.200 1.200 34 H -0.213 1.213 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.185 0.815 39 H 0.255 0.745 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.147 0.853 47 H 0.124 0.876 48 H 0.128 0.872 49 H 0.147 0.853 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.432 -2.142 4.087 5.216 hybrid contribution -0.274 -1.540 1.390 2.092 sum -2.705 -3.682 5.477 7.132 Atomic orbital electron populations 1.86452 1.16547 1.82332 1.51648 1.24014 0.86145 1.09433 0.95243 0.94122 0.78732 0.76396 0.85545 1.24105 1.06704 0.98289 1.01219 1.20297 1.00585 0.94724 0.97714 1.20739 0.97330 1.01437 0.94762 1.23185 1.07045 0.97133 0.99588 1.18480 0.95152 0.94870 0.91198 1.21214 0.99909 0.96073 0.95291 1.21286 0.93590 0.98717 0.94659 1.19989 1.03114 0.96047 0.95981 1.18397 0.79561 0.82361 0.84501 1.90800 1.44344 1.43824 1.66634 1.45427 1.53109 1.12975 1.23036 1.21758 0.92930 0.98727 0.84977 0.88542 1.23782 0.96909 0.93219 1.03696 1.25179 1.00629 0.94586 1.02028 0.85657 1.85610 1.56858 1.31166 1.14567 1.21903 1.02262 0.99775 0.96967 1.21374 1.01898 1.01377 0.91789 1.21405 0.96100 0.94905 1.00457 1.21547 0.99727 0.97868 0.96211 1.21412 0.98288 0.99646 0.93464 1.21012 0.97981 0.94923 1.00553 1.23134 0.99807 0.91000 1.00288 1.20919 0.96497 0.96786 0.93930 1.20979 0.98774 0.99089 0.96321 1.84474 1.51171 1.15567 1.16521 0.74125 0.87064 1.19970 1.21264 0.81683 0.80569 0.81780 0.81520 0.74513 0.88103 0.90699 0.84807 0.83931 0.83917 0.83830 0.85342 0.87577 0.87241 0.85308 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.11 12.83 -148.98 -1.91 -0.81 16 2 C -0.04 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.75 -1.04 30.96 68.60 2.12 1.08 16 4 C -0.19 -0.68 5.76 24.66 0.14 -0.53 16 5 C -0.10 -0.12 10.00 21.14 0.21 0.09 16 6 C -0.11 0.00 9.64 21.41 0.21 0.21 16 7 C -0.15 -0.55 6.37 23.98 0.15 -0.40 16 8 C 0.01 0.01 5.88 -20.05 -0.12 -0.10 16 9 C -0.11 0.34 9.48 22.26 0.21 0.55 16 10 C -0.06 0.28 9.48 22.26 0.21 0.49 16 11 C -0.15 -0.34 5.88 -20.05 -0.12 -0.46 16 12 C 0.56 2.63 7.76 86.70 0.67 3.30 16 13 O -0.58 -7.92 15.95 -4.02 -0.06 -7.99 16 14 N -0.69 2.05 5.21 -443.16 -2.31 -0.26 16 15 C 0.12 -0.26 4.30 45.52 0.20 -0.06 16 16 H 0.10 0.22 7.50 -2.39 -0.02 0.21 16 17 C -0.14 0.25 7.38 31.21 0.23 0.48 16 18 C -0.10 0.39 2.90 31.21 0.09 0.48 16 19 H 0.13 -0.86 6.88 -2.39 -0.02 -0.88 16 20 S -0.13 -0.21 21.73 -56.49 -1.23 -1.44 16 21 C -0.10 -0.34 6.11 22.62 0.14 -0.20 16 22 C -0.14 -0.18 9.32 22.41 0.21 0.02 16 23 C -0.11 -0.02 10.04 22.25 0.22 0.20 16 24 C -0.13 -0.02 10.04 22.30 0.22 0.20 16 25 C -0.11 -0.13 10.04 22.25 0.22 0.09 16 26 C -0.12 -0.43 9.79 22.41 0.22 -0.21 16 27 C -0.10 0.60 7.41 31.12 0.23 0.83 16 28 C -0.06 -0.34 9.53 22.26 0.21 -0.13 16 29 C -0.13 -0.63 9.54 22.26 0.21 -0.42 16 30 S 0.06 0.36 19.46 -56.49 -1.10 -0.74 16 31 H 0.41 -5.15 8.74 -74.06 -0.65 -5.80 16 32 H 0.11 -0.76 7.96 -2.39 -0.02 -0.78 16 33 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 34 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 35 H 0.17 -0.44 8.06 -2.91 -0.02 -0.46 16 36 H 0.18 -1.18 6.88 -2.91 -0.02 -1.20 16 37 H 0.16 -1.53 6.74 -2.91 -0.02 -1.55 16 38 H 0.17 -2.07 6.38 -2.91 -0.02 -2.09 16 39 H 0.42 -4.03 6.71 -92.71 -0.62 -4.66 16 40 H 0.10 -0.04 8.11 -2.38 -0.02 -0.06 16 41 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.13 -0.30 5.64 -2.91 -0.02 -0.32 16 43 H 0.14 -0.59 8.06 -2.91 -0.02 -0.61 16 44 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 45 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 46 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 47 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 48 H 0.11 -0.58 8.10 -2.39 -0.02 -0.60 16 49 H 0.13 0.92 7.64 -2.91 -0.02 0.89 16 50 H 0.12 0.58 7.26 -2.91 -0.02 0.56 16 Total: 0.00 -25.77 441.07 -0.52 -26.29 By element: Atomic # 1 Polarization: -20.59 SS G_CDS: -0.22 Total: -20.81 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 4.19 Total: 4.69 kcal Atomic # 7 Polarization: 2.05 SS G_CDS: -2.31 Total: -0.26 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.98 Total: -8.79 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.12 Total: 1.08 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.33 Total: -2.18 kcal Total: -25.77 -0.52 -26.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_13308390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.714 kcal (2) G-P(sol) polarization free energy of solvation -25.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds