Wall clock time and date at job start Sat Mar 6 2021 19:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39203 * 119.93121 * 240.00456 * 4 2 1 6 6 C 1.50697 * 119.96538 * 359.97438 * 5 4 2 7 7 O 1.42902 * 109.47290 * 285.00642 * 6 5 4 8 8 Si 1.86295 * 109.47105 * 165.00163 * 6 5 4 9 9 C 1.37633 * 120.06886 * 179.97438 * 5 4 2 10 10 C 1.39773 * 119.93025 * 0.02562 * 9 5 4 11 11 C 1.47524 * 120.06743 * 180.02562 * 10 9 5 12 12 O 1.21599 * 120.00073 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99738 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85071 * 25.33263 * 14 13 11 16 16 C 1.53784 * 113.61161 * 156.52863 * 14 13 11 17 17 C 1.53773 * 87.08324 * 89.11550 * 16 14 13 18 18 H 1.08994 * 113.61674 * 270.88214 * 17 16 14 19 19 S 1.81402 * 113.61743 * 140.06178 * 17 16 14 20 20 C 1.76195 * 103.00342 * 174.99911 * 19 17 16 21 21 C 1.38974 * 120.07826 * 359.73060 * 20 19 17 22 22 C 1.38084 * 119.91970 * 179.67889 * 21 20 19 23 23 C 1.38311 * 120.07885 * 0.61575 * 22 21 20 24 24 C 1.38295 * 120.15794 * 359.67908 * 23 22 21 25 25 C 1.38089 * 120.08267 * 0.02562 * 24 23 22 26 26 C 1.53782 * 113.61505 * 254.13209 * 14 13 11 27 27 C 1.39820 * 119.86172 * 0.02562 * 10 9 5 28 28 C 1.37582 * 119.93048 * 359.69969 * 27 10 9 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 33 33 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 34 34 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 35 35 H 1.08998 * 109.47004 * 45.00152 * 6 5 4 36 36 H 0.96699 * 114.00359 * 59.99790 * 7 6 5 37 37 H 1.48498 * 110.00400 * 300.00155 * 8 6 5 38 38 H 1.48507 * 109.99907 * 61.32224 * 8 6 5 39 39 H 1.08000 * 120.03467 * 179.97438 * 9 5 4 40 40 H 0.97000 * 120.00618 * 359.97438 * 13 11 10 41 41 H 1.09005 * 113.61058 * 203.66157 * 16 14 13 42 42 H 1.08994 * 113.61606 * 334.56162 * 16 14 13 43 43 H 1.07998 * 120.04120 * 359.97438 * 21 20 19 44 44 H 1.07998 * 119.96254 * 180.31877 * 22 21 20 45 45 H 1.07995 * 119.92054 * 179.70353 * 23 22 21 46 46 H 1.08003 * 119.96125 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.03928 * 179.97438 * 25 24 23 48 48 H 1.09002 * 113.61092 * 25.43345 * 26 14 13 49 49 H 1.08998 * 113.61541 * 156.33561 * 26 14 13 50 50 H 1.08002 * 120.02916 * 180.02562 * 27 10 9 51 51 H 1.08002 * 119.96336 * 180.29518 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1173 -2.2448 0.5578 7 8 4.0867 -1.3442 1.0976 8 14 3.8119 -3.9734 0.5502 9 6 3.2735 -2.5531 -1.9156 10 6 2.9599 -2.1702 -3.2228 11 6 3.4876 -2.9401 -4.3652 12 8 4.1966 -3.9086 -4.1702 13 7 3.1847 -2.5694 -5.6251 14 6 3.7092 -3.3337 -6.7596 15 1 3.9363 -4.3686 -6.5040 16 6 2.8732 -3.1849 -8.0417 17 6 3.7552 -1.9722 -8.3823 18 1 3.3776 -1.0315 -7.9819 19 16 4.1952 -1.8640 -10.1388 20 6 5.0580 -0.3310 -10.2377 21 6 5.2309 0.4457 -9.0983 22 6 5.9134 1.6434 -9.1782 23 6 6.4136 2.0765 -10.3928 24 6 6.2382 1.3091 -11.5299 25 6 5.5620 0.1074 -11.4564 26 6 4.8467 -2.6205 -7.5096 27 6 2.1449 -1.0561 -3.4454 28 6 1.6493 -0.3439 -2.3777 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 1.5899 1.9163 0.8525 33 1 3.0829 1.3431 0.0709 34 1 1.7045 1.8723 -0.9233 35 1 2.2160 -2.2181 1.1701 36 1 3.7923 -0.4238 1.1320 37 1 2.8133 -4.9197 -0.0089 38 1 5.0588 -4.0162 -0.2554 39 1 3.9037 -3.4125 -1.7405 40 1 2.6195 -1.7967 -5.7807 41 1 2.9877 -4.0170 -8.7365 42 1 1.8304 -2.9280 -7.8557 43 1 4.8361 0.1107 -8.1506 44 1 6.0526 2.2451 -8.2923 45 1 6.9429 3.0159 -10.4533 46 1 6.6305 1.6501 -12.4766 47 1 5.4250 -0.4911 -12.3448 48 1 5.3960 -1.9080 -6.8942 49 1 5.4997 -3.2984 -8.0592 50 1 1.9005 -0.7581 -4.4543 51 1 1.0159 0.5140 -2.5489 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_13422196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:47:01 Heat of formation + Delta-G solvation = 40.898311 kcal Electronic energy + Delta-G solvation = -32446.207637 eV Core-core repulsion = 28211.771466 eV Total energy + Delta-G solvation = -4234.436171 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99101 -41.04816 -39.89667 -39.42520 -37.72420 -37.39145 -34.76368 -32.82968 -32.10361 -31.94251 -31.40400 -28.59417 -27.24893 -26.98047 -26.96262 -25.72897 -23.79705 -23.64738 -23.35965 -23.05309 -21.46470 -20.86385 -19.31164 -18.77233 -18.14571 -18.10257 -17.64639 -17.42446 -16.77521 -16.55380 -16.48985 -16.13713 -16.02841 -15.98785 -15.85205 -15.63650 -15.10639 -15.09554 -14.92750 -14.67640 -14.46577 -14.25435 -14.13132 -13.93169 -13.87904 -13.68941 -13.57544 -13.26486 -13.20529 -13.07939 -12.76109 -12.67337 -12.36422 -12.30374 -12.16925 -11.96706 -11.76315 -11.48091 -11.36801 -11.13655 -11.03185 -10.79661 -10.41623 -10.26058 -10.02121 -9.92963 -9.66024 -8.44855 -4.93671 -0.56793 -0.01280 0.17712 0.33323 0.47872 1.29787 1.32108 1.44922 1.56514 1.77852 1.90719 2.45047 2.66112 2.69025 3.15613 3.19010 3.37801 3.43115 3.53543 3.57657 3.71021 3.81969 3.86394 3.94295 3.95920 4.01869 4.09159 4.16996 4.32165 4.34669 4.36706 4.41226 4.42823 4.48537 4.53550 4.55850 4.57449 4.58167 4.62716 4.68973 4.72359 4.77843 4.84019 4.87973 4.96622 4.96992 4.98197 4.98631 5.08865 5.22310 5.30036 5.37940 5.39151 5.50104 5.74240 5.90111 6.12555 6.23152 6.64189 6.91182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.022 3.978 4 C 0.134 3.866 5 C -0.112 4.112 6 C -0.063 4.063 7 O -0.544 6.544 8 Si 0.794 3.206 9 C -0.081 4.081 10 C -0.149 4.149 11 C 0.561 3.439 12 O -0.579 6.579 13 N -0.690 5.690 14 C 0.121 3.879 15 H 0.095 0.905 16 C -0.101 4.101 17 C -0.095 4.095 18 H 0.125 0.875 19 S -0.126 6.126 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.135 4.135 27 C -0.057 4.057 28 C -0.148 4.148 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.374 0.626 37 H -0.274 1.274 38 H -0.301 1.301 39 H 0.112 0.888 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.164 0.836 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 7.091 1.038 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.245 5.245 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.114 4.114 6 C -0.173 4.173 7 O -0.351 6.351 8 Si 0.699 3.301 9 C -0.100 4.100 10 C -0.152 4.152 11 C 0.349 3.651 12 O -0.460 6.460 13 N -0.342 5.342 14 C 0.014 3.986 15 H 0.114 0.886 16 C -0.140 4.140 17 C -0.224 4.224 18 H 0.143 0.857 19 S 0.121 5.879 20 C -0.210 4.210 21 C -0.165 4.165 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.128 4.128 25 C -0.144 4.144 26 C -0.176 4.176 27 C -0.076 4.076 28 C -0.168 4.168 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.115 0.885 36 H 0.223 0.777 37 H -0.201 1.201 38 H -0.230 1.230 39 H 0.129 0.871 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.151 0.849 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.147 0.853 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.182 0.818 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.032 4.103 0.326 6.501 hybrid contribution -0.514 2.611 -0.888 2.806 sum -5.546 6.715 -0.562 8.727 Atomic orbital electron populations 1.22559 0.84022 1.03062 1.02528 1.59448 1.10014 1.15296 1.39760 1.22612 1.01084 0.86033 1.02629 1.18942 0.93924 0.93018 0.90208 1.20334 0.98871 0.96084 0.96090 1.25041 0.97884 1.04366 0.90024 1.86690 1.41923 1.21815 1.84649 0.92808 0.76741 0.73121 0.87429 1.21066 0.97774 0.98660 0.92492 1.19844 1.03621 0.99331 0.92407 1.18407 0.79463 0.83366 0.83815 1.90806 1.39509 1.29670 1.85969 1.45395 1.52219 1.32732 1.03893 1.21795 0.95248 0.96491 0.85066 0.88642 1.23131 0.99584 0.96545 0.94788 1.25158 1.01373 1.02991 0.92855 0.85710 1.85595 1.67343 1.21889 1.13084 1.21908 1.03146 0.98698 0.97278 1.21363 1.01757 0.96030 0.97347 1.21405 0.96790 0.95815 0.98902 1.21550 1.00257 1.00871 0.92628 1.21422 0.97631 0.93831 0.99874 1.21014 0.99424 0.97603 0.96332 1.23785 0.96414 1.00080 0.97346 1.21462 0.93264 0.91748 1.01104 1.21918 1.01355 1.01466 0.92049 0.91602 0.93739 0.89036 0.88842 0.91092 0.93901 0.88509 0.77679 1.20052 1.22988 0.87077 0.74467 0.87102 0.87497 0.84950 0.83962 0.83853 0.83734 0.85271 0.90838 0.88004 0.81815 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.16 9.33 127.69 1.19 1.03 16 2 N -0.52 2.06 3.70 -745.09 -2.76 -0.70 16 3 C 0.02 -0.16 9.10 127.69 1.16 1.00 16 4 C 0.13 -0.06 4.66 38.47 0.18 0.12 16 5 C -0.11 -0.53 5.28 -19.78 -0.10 -0.64 16 6 C -0.06 -0.23 2.29 71.24 0.16 -0.07 16 7 O -0.54 -2.43 12.65 -148.98 -1.89 -4.32 16 8 Si 0.79 4.32 30.40 68.60 2.09 6.40 16 9 C -0.08 -0.72 8.19 22.50 0.18 -0.53 16 10 C -0.15 -0.68 5.88 -20.08 -0.12 -0.80 16 11 C 0.56 3.97 7.76 86.69 0.67 4.65 16 12 O -0.58 -9.80 15.95 -4.03 -0.06 -9.87 16 13 N -0.69 1.07 5.21 -443.20 -2.31 -1.25 16 14 C 0.12 -0.12 4.30 45.52 0.20 0.08 16 15 H 0.10 0.35 7.50 -2.39 -0.02 0.33 16 16 C -0.10 0.54 7.41 31.12 0.23 0.77 16 17 C -0.10 0.34 2.90 31.21 0.09 0.43 16 18 H 0.12 -0.80 6.85 -2.39 -0.02 -0.81 16 19 S -0.13 -0.24 21.73 -56.49 -1.23 -1.47 16 20 C -0.10 -0.37 6.11 22.62 0.14 -0.23 16 21 C -0.14 -0.23 9.32 22.41 0.21 -0.02 16 22 C -0.11 -0.05 10.04 22.25 0.22 0.17 16 23 C -0.13 -0.04 10.04 22.30 0.22 0.18 16 24 C -0.11 -0.14 10.04 22.25 0.22 0.09 16 25 C -0.12 -0.44 9.79 22.41 0.22 -0.22 16 26 C -0.14 0.13 7.40 31.21 0.23 0.36 16 27 C -0.06 0.20 9.53 22.50 0.21 0.42 16 28 C -0.15 0.60 8.53 22.36 0.19 0.79 16 29 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.04 -0.36 7.08 -2.39 -0.02 -0.38 16 31 H 0.09 -0.78 8.12 -2.38 -0.02 -0.80 16 32 H 0.09 -0.87 8.12 -2.38 -0.02 -0.89 16 33 H 0.07 -0.45 7.41 -2.39 -0.02 -0.46 16 34 H 0.04 -0.35 7.33 -2.39 -0.02 -0.37 16 35 H 0.10 0.06 7.77 -2.39 -0.02 0.04 16 36 H 0.37 -0.11 7.48 -74.06 -0.55 -0.66 16 37 H -0.27 -2.52 7.11 99.48 0.71 -1.81 16 38 H -0.30 -4.22 6.81 99.48 0.68 -3.55 16 39 H 0.11 1.57 4.50 -2.91 -0.01 1.55 16 40 H 0.42 -3.60 6.72 -92.71 -0.62 -4.22 16 41 H 0.11 -0.55 8.10 -2.38 -0.02 -0.57 16 42 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H 0.13 -0.23 5.64 -2.91 -0.02 -0.25 16 44 H 0.14 -0.54 8.06 -2.91 -0.02 -0.57 16 45 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 46 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 47 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 48 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.10 0.05 8.11 -2.39 -0.02 0.03 16 50 H 0.16 -1.87 6.39 -2.91 -0.02 -1.89 16 51 H 0.16 -1.45 6.99 -2.91 -0.02 -1.47 16 Total: 0.00 -21.78 422.24 -0.64 -22.41 By element: Atomic # 1 Polarization: -18.60 SS G_CDS: -0.20 Total: -18.79 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.72 Total: 7.57 kcal Atomic # 7 Polarization: 3.13 SS G_CDS: -5.07 Total: -1.94 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.95 Total: -14.19 kcal Atomic # 14 Polarization: 4.32 SS G_CDS: 2.09 Total: 6.40 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.23 Total: -1.47 kcal Total: -21.78 -0.64 -22.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_13422196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.311 kcal (2) G-P(sol) polarization free energy of solvation -21.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds