Wall clock time and date at job start Sat Mar 6 2021 19:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47429 * 2 1 4 4 C 1.50704 * 109.46645 * 240.00018 * 2 1 3 5 5 C 1.34857 * 125.88939 * 120.04240 * 4 2 1 6 6 C 1.40887 * 107.41600 * 179.73065 * 5 4 2 7 7 C 1.34853 * 107.41935 * 0.38227 * 6 5 4 8 8 C 1.50699 * 125.89169 * 179.88423 * 7 6 5 9 9 C 1.50706 * 109.46817 * 274.68878 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.85009 * 334.67148 * 12 11 9 14 14 C 1.53786 * 113.61381 * 105.86479 * 12 11 9 15 15 C 1.54050 * 86.98144 * 89.16531 * 14 12 11 16 16 H 1.08997 * 113.69243 * 270.87038 * 15 14 12 17 17 S 1.81401 * 113.61691 * 139.98311 * 15 14 12 18 18 C 1.76193 * 103.00202 * 87.49971 * 17 15 14 19 19 C 1.38972 * 120.08198 * 359.72846 * 18 17 15 20 20 C 1.38085 * 119.91603 * 179.71922 * 19 18 17 21 21 C 1.38298 * 120.08507 * 0.57601 * 20 19 18 22 22 C 1.38303 * 120.15871 * 359.67489 * 21 20 19 23 23 C 1.38088 * 120.07857 * 0.04738 * 22 21 20 24 24 C 1.53773 * 113.61768 * 203.47515 * 12 11 9 25 25 N 1.36339 * 125.89104 * 300.00043 * 4 2 1 26 26 H 0.96699 * 113.99764 * 59.99650 * 1 2 3 27 27 H 1.08994 * 109.47044 * 120.00718 * 2 1 3 28 28 H 1.48500 * 109.99894 * 298.68486 * 3 2 1 29 29 H 1.48500 * 109.99679 * 59.99917 * 3 2 1 30 30 H 1.08000 * 126.28574 * 359.94630 * 5 4 2 31 31 H 1.08001 * 126.29020 * 180.23467 * 6 5 4 32 32 H 1.09000 * 109.46670 * 154.69102 * 8 7 6 33 33 H 1.09000 * 109.47247 * 34.68815 * 8 7 6 34 34 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 35 35 H 1.09004 * 113.61439 * 203.67013 * 14 12 11 36 36 H 1.09002 * 113.61266 * 334.57214 * 14 12 11 37 37 H 1.07999 * 120.03748 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.95465 * 180.27457 * 20 19 18 39 39 H 1.07994 * 119.92215 * 179.70279 * 21 20 19 40 40 H 1.08004 * 119.96151 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.03389 * 179.97438 * 23 22 21 42 42 H 1.09000 * 113.61571 * 25.42974 * 24 12 11 43 43 H 1.09005 * 113.61978 * 156.33665 * 24 12 11 44 44 H 0.97001 * 125.64154 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 2.7104 -0.1729 -2.1911 6 6 2.9502 -1.1766 -3.1503 7 6 2.3014 -2.2867 -2.7438 8 6 2.2764 -3.6095 -3.4653 9 6 1.1841 -3.5948 -4.5035 10 8 0.4937 -2.6076 -4.6434 11 7 0.9746 -4.6787 -5.2766 12 6 -0.0875 -4.6647 -6.2855 13 1 -0.8891 -3.9657 -6.0465 14 6 0.4334 -4.5354 -7.7266 15 6 0.5092 -6.0738 -7.7507 16 1 1.4621 -6.4709 -7.4011 17 16 -0.0230 -6.8031 -9.3241 18 6 1.4568 -6.8055 -10.2805 19 6 2.6358 -6.3055 -9.7409 20 6 3.7948 -6.3144 -10.4914 21 6 3.7808 -6.8091 -11.7828 22 6 2.6081 -7.3027 -12.3250 23 6 1.4465 -7.3023 -11.5784 24 6 -0.5877 -6.0663 -6.6729 25 7 1.6769 -2.0076 -1.5643 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8899 28 1 1.5879 2.4585 -1.2242 29 1 1.5616 2.4678 1.2085 30 1 3.0849 0.8397 -2.2180 31 1 3.5425 -1.0748 -4.0476 32 1 2.0871 -4.4099 -2.7500 33 1 3.2376 -3.7764 -3.9515 34 1 1.5266 -5.4684 -5.1645 35 1 -0.2994 -4.1233 -8.4204 36 1 1.4057 -4.0477 -7.7973 37 1 2.6464 -5.9143 -8.7343 38 1 4.7125 -5.9301 -10.0710 39 1 4.6877 -6.8104 -12.3691 40 1 2.6008 -7.6886 -13.3337 41 1 0.5310 -7.6875 -12.0027 42 1 -0.4392 -6.8138 -5.8937 43 1 -1.5991 -6.0721 -7.0793 44 1 1.1405 -2.6294 -1.0479 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_14644196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:47:20 Heat of formation + Delta-G solvation = 35.211607 kcal Electronic energy + Delta-G solvation = -26203.137057 eV Core-core repulsion = 22407.755671 eV Total energy + Delta-G solvation = -3795.381386 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32897 -41.20304 -39.87690 -39.23541 -37.76420 -34.46227 -33.01976 -32.07258 -31.92035 -31.87535 -29.49902 -27.05527 -26.67945 -25.09900 -23.72530 -23.48328 -22.31823 -21.30900 -21.03604 -20.74901 -18.98523 -18.77528 -18.46797 -17.65011 -17.27632 -16.74894 -16.58232 -16.35900 -16.25628 -15.89802 -15.77021 -15.29500 -15.02947 -14.88328 -14.54731 -14.47968 -14.29935 -14.17948 -14.02686 -13.90478 -13.78668 -13.73856 -13.50756 -13.20894 -12.85465 -12.30949 -12.16679 -12.12872 -12.00748 -11.75838 -11.74358 -11.13522 -10.97693 -10.77048 -10.75692 -10.21923 -9.98248 -9.73484 -8.92847 -8.39254 -4.88322 0.22041 0.37195 0.49236 1.09535 1.31620 1.33740 1.52684 1.70905 1.83417 1.98100 2.20751 2.47372 2.72616 3.11482 3.14218 3.37929 3.50079 3.58156 3.64060 3.82713 3.84898 3.86423 3.94211 3.96196 4.13380 4.29181 4.29760 4.40947 4.45602 4.47686 4.50017 4.55033 4.57700 4.60333 4.73330 4.74779 4.80536 4.84751 4.98377 5.25652 5.30127 5.33611 5.37488 5.39366 5.52649 5.90366 6.02316 6.17450 6.30497 6.40247 6.64026 7.11597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.055 4.055 3 Si 0.714 3.286 4 C -0.008 4.008 5 C -0.186 4.186 6 C -0.172 4.172 7 C 0.035 3.965 8 C -0.071 4.071 9 C 0.514 3.486 10 O -0.518 6.518 11 N -0.718 5.718 12 C 0.126 3.874 13 H 0.111 0.889 14 C -0.136 4.136 15 C -0.107 4.107 16 H 0.111 0.889 17 S -0.105 6.105 18 C -0.083 4.083 19 C -0.132 4.132 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.102 4.102 24 C -0.115 4.115 25 N -0.535 5.535 26 H 0.380 0.620 27 H 0.115 0.885 28 H -0.257 1.257 29 H -0.258 1.258 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.401 0.599 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -3.512 0.316 5.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.165 4.165 3 Si 0.614 3.386 4 C -0.121 4.121 5 C -0.211 4.211 6 C -0.197 4.197 7 C -0.079 4.079 8 C -0.112 4.112 9 C 0.300 3.700 10 O -0.392 6.392 11 N -0.370 5.370 12 C 0.019 3.981 13 H 0.129 0.871 14 C -0.177 4.177 15 C -0.236 4.236 16 H 0.129 0.871 17 S 0.142 5.858 18 C -0.196 4.196 19 C -0.156 4.156 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.155 4.155 25 N -0.130 5.130 26 H 0.228 0.772 27 H 0.133 0.867 28 H -0.181 1.181 29 H -0.183 1.183 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.507 -2.739 0.650 3.769 hybrid contribution 0.338 -0.732 -0.156 0.821 sum 2.845 -3.470 0.493 4.515 Atomic orbital electron populations 1.86561 1.17942 1.80228 1.49659 1.24787 0.83772 1.11449 0.96464 0.94444 0.91406 0.72560 0.80236 1.20793 1.05824 0.85380 1.00135 1.20655 1.04496 1.00009 0.95934 1.20589 1.05632 0.92325 1.01142 1.19452 1.02387 0.96430 0.89618 1.20128 0.99607 0.94879 0.96586 1.20646 0.84978 0.82705 0.81655 1.90780 1.47415 1.32389 1.68591 1.45697 1.36489 1.17422 1.37441 1.21759 0.90917 0.97917 0.87527 0.87082 1.23815 1.03534 0.93000 0.97348 1.25130 1.03087 0.99656 0.95704 0.87096 1.85562 1.12125 1.78240 1.09882 1.21746 0.96823 1.03053 0.97947 1.21159 0.92318 1.01914 1.00198 1.21100 0.97730 0.98739 0.94496 1.21244 0.98416 0.99179 0.95681 1.21154 0.92348 0.98675 0.99847 1.20812 0.98969 1.00324 0.92480 1.23164 0.98805 0.97109 0.96392 1.41787 1.40958 1.11028 1.19236 0.77216 0.86750 1.18135 1.18305 0.84065 0.84589 0.88113 0.86396 0.76434 0.87627 0.90246 0.86015 0.85656 0.85636 0.85353 0.85482 0.89457 0.87502 0.75095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.09 12.88 -35.23 -0.45 -1.54 16 2 C -0.06 -0.02 3.08 36.01 0.11 0.09 16 3 Si 0.71 -0.30 30.59 -169.99 -5.20 -5.50 16 4 C -0.01 -0.01 6.50 -81.79 -0.53 -0.54 16 5 C -0.19 -0.33 9.37 -39.78 -0.37 -0.70 16 6 C -0.17 -0.33 10.76 -39.78 -0.43 -0.76 16 7 C 0.03 0.03 5.66 -81.79 -0.46 -0.43 16 8 C -0.07 0.17 6.24 -29.03 -0.18 -0.01 16 9 C 0.51 0.02 7.82 -10.98 -0.09 -0.06 16 10 O -0.52 -2.56 15.65 5.56 0.09 -2.48 16 11 N -0.72 1.88 5.26 -53.02 -0.28 1.60 16 12 C 0.13 -0.21 4.29 -67.12 -0.29 -0.50 16 13 H 0.11 0.04 7.50 -51.93 -0.39 -0.35 16 14 C -0.14 0.19 7.37 -25.77 -0.19 0.00 16 15 C -0.11 0.21 2.90 -25.78 -0.07 0.14 16 16 H 0.11 -0.32 6.88 -51.93 -0.36 -0.68 16 17 S -0.11 -0.06 21.72 -107.50 -2.34 -2.40 16 18 C -0.08 -0.12 6.11 -39.04 -0.24 -0.36 16 19 C -0.13 -0.08 9.32 -39.37 -0.37 -0.44 16 20 C -0.10 -0.02 10.04 -39.62 -0.40 -0.42 16 21 C -0.12 -0.02 10.04 -39.54 -0.40 -0.42 16 22 C -0.10 -0.05 10.04 -39.61 -0.40 -0.45 16 23 C -0.10 -0.14 9.79 -39.36 -0.39 -0.52 16 24 C -0.12 0.32 7.41 -25.92 -0.19 0.13 16 25 N -0.54 -0.46 6.07 -5.43 -0.03 -0.50 16 26 H 0.38 0.00 8.70 45.56 0.40 0.40 16 27 H 0.11 -0.08 7.96 -51.93 -0.41 -0.49 16 28 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 29 H -0.26 -0.65 7.11 56.52 0.40 -0.24 16 30 H 0.14 0.02 6.22 -52.49 -0.33 -0.31 16 31 H 0.14 0.11 8.06 -52.49 -0.42 -0.32 16 32 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 33 H 0.12 -0.54 8.14 -51.93 -0.42 -0.96 16 34 H 0.40 -2.17 8.70 -40.82 -0.36 -2.52 16 35 H 0.11 -0.08 8.10 -51.93 -0.42 -0.50 16 36 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 37 H 0.12 -0.13 5.64 -52.49 -0.30 -0.42 16 38 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 39 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 40 H 0.13 -0.19 8.06 -52.48 -0.42 -0.61 16 41 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 42 H 0.09 -0.32 8.14 -51.93 -0.42 -0.75 16 43 H 0.11 -0.27 8.10 -51.93 -0.42 -0.69 16 44 H 0.41 -0.30 8.96 -40.82 -0.37 -0.67 16 LS Contribution 382.78 15.07 5.77 5.77 Total: 0.00 -9.32 382.78 -13.28 -22.60 By element: Atomic # 1 Polarization: -6.34 SS G_CDS: -5.95 Total: -12.29 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -4.88 Total: -5.26 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -0.31 Total: 1.10 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.37 Total: -4.02 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: -5.20 Total: -5.50 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.34 Total: -2.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -9.32 -13.28 -22.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_14644196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.807 kcal (2) G-P(sol) polarization free energy of solvation -9.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds