Wall clock time and date at job start Sat Mar 6 2021 19:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47429 * 2 1 4 4 C 1.50704 * 109.46645 * 240.00018 * 2 1 3 5 5 C 1.34857 * 125.88939 * 120.04240 * 4 2 1 6 6 C 1.40887 * 107.41600 * 179.73065 * 5 4 2 7 7 C 1.34853 * 107.41935 * 0.38227 * 6 5 4 8 8 C 1.50699 * 125.89169 * 179.88423 * 7 6 5 9 9 C 1.50706 * 109.46817 * 274.68878 * 8 7 6 10 10 O 1.21279 * 120.00072 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.85009 * 334.67148 * 12 11 9 14 14 C 1.53786 * 113.61381 * 105.86479 * 12 11 9 15 15 C 1.54050 * 86.98144 * 89.16531 * 14 12 11 16 16 H 1.08997 * 113.69243 * 270.87038 * 15 14 12 17 17 S 1.81401 * 113.61691 * 139.98311 * 15 14 12 18 18 C 1.76193 * 103.00202 * 87.49971 * 17 15 14 19 19 C 1.38972 * 120.08198 * 359.72846 * 18 17 15 20 20 C 1.38085 * 119.91603 * 179.71922 * 19 18 17 21 21 C 1.38298 * 120.08507 * 0.57601 * 20 19 18 22 22 C 1.38303 * 120.15871 * 359.67489 * 21 20 19 23 23 C 1.38088 * 120.07857 * 0.04738 * 22 21 20 24 24 C 1.53773 * 113.61768 * 203.47515 * 12 11 9 25 25 N 1.36339 * 125.89104 * 300.00043 * 4 2 1 26 26 H 0.96699 * 113.99764 * 59.99650 * 1 2 3 27 27 H 1.08994 * 109.47044 * 120.00718 * 2 1 3 28 28 H 1.48500 * 109.99894 * 298.68486 * 3 2 1 29 29 H 1.48500 * 109.99679 * 59.99917 * 3 2 1 30 30 H 1.08000 * 126.28574 * 359.94630 * 5 4 2 31 31 H 1.08001 * 126.29020 * 180.23467 * 6 5 4 32 32 H 1.09000 * 109.46670 * 154.69102 * 8 7 6 33 33 H 1.09000 * 109.47247 * 34.68815 * 8 7 6 34 34 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 35 35 H 1.09004 * 113.61439 * 203.67013 * 14 12 11 36 36 H 1.09002 * 113.61266 * 334.57214 * 14 12 11 37 37 H 1.07999 * 120.03748 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.95465 * 180.27457 * 20 19 18 39 39 H 1.07994 * 119.92215 * 179.70279 * 21 20 19 40 40 H 1.08004 * 119.96151 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.03389 * 179.97438 * 23 22 21 42 42 H 1.09000 * 113.61571 * 25.42974 * 24 12 11 43 43 H 1.09005 * 113.61978 * 156.33665 * 24 12 11 44 44 H 0.97001 * 125.64154 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 2.7104 -0.1729 -2.1911 6 6 2.9502 -1.1766 -3.1503 7 6 2.3014 -2.2867 -2.7438 8 6 2.2764 -3.6095 -3.4653 9 6 1.1841 -3.5948 -4.5035 10 8 0.4937 -2.6076 -4.6434 11 7 0.9746 -4.6787 -5.2766 12 6 -0.0875 -4.6647 -6.2855 13 1 -0.8891 -3.9657 -6.0465 14 6 0.4334 -4.5354 -7.7266 15 6 0.5092 -6.0738 -7.7507 16 1 1.4621 -6.4709 -7.4011 17 16 -0.0230 -6.8031 -9.3241 18 6 1.4568 -6.8055 -10.2805 19 6 2.6358 -6.3055 -9.7409 20 6 3.7948 -6.3144 -10.4914 21 6 3.7808 -6.8091 -11.7828 22 6 2.6081 -7.3027 -12.3250 23 6 1.4465 -7.3023 -11.5784 24 6 -0.5877 -6.0663 -6.6729 25 7 1.6769 -2.0076 -1.5643 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8899 28 1 1.5879 2.4585 -1.2242 29 1 1.5616 2.4678 1.2085 30 1 3.0849 0.8397 -2.2180 31 1 3.5425 -1.0748 -4.0476 32 1 2.0871 -4.4099 -2.7500 33 1 3.2376 -3.7764 -3.9515 34 1 1.5266 -5.4684 -5.1645 35 1 -0.2994 -4.1233 -8.4204 36 1 1.4057 -4.0477 -7.7973 37 1 2.6464 -5.9143 -8.7343 38 1 4.7125 -5.9301 -10.0710 39 1 4.6877 -6.8104 -12.3691 40 1 2.6008 -7.6886 -13.3337 41 1 0.5310 -7.6875 -12.0027 42 1 -0.4392 -6.8138 -5.8937 43 1 -1.5991 -6.0721 -7.0793 44 1 1.1405 -2.6294 -1.0479 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_14644196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:47:19 Heat of formation + Delta-G solvation = 36.800657 kcal Electronic energy + Delta-G solvation = -26203.068151 eV Core-core repulsion = 22407.755671 eV Total energy + Delta-G solvation = -3795.312480 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34341 -41.15214 -39.85279 -39.22054 -37.85815 -34.44102 -32.95420 -32.05111 -31.91997 -31.90005 -29.48305 -26.92421 -26.59939 -25.10071 -23.71168 -23.45953 -22.27902 -21.35571 -21.04384 -20.66721 -19.03729 -18.74025 -18.41161 -17.58187 -17.26959 -16.71474 -16.53108 -16.40340 -16.22452 -15.86495 -15.72734 -15.33865 -15.00437 -14.85683 -14.58617 -14.42823 -14.23819 -14.20646 -14.06208 -13.87213 -13.83142 -13.66086 -13.47418 -13.14789 -12.78016 -12.25554 -12.20820 -12.10019 -11.88482 -11.87295 -11.68560 -11.11829 -11.01728 -10.83904 -10.74499 -10.15480 -9.98092 -9.79566 -8.96651 -8.41545 -4.88953 0.21566 0.37262 0.52567 1.07240 1.30716 1.37671 1.57172 1.66850 1.83175 1.93164 2.24884 2.49584 2.72915 3.23537 3.28553 3.36242 3.62617 3.68223 3.77816 3.80648 3.90629 3.98868 4.01740 4.20801 4.21721 4.42106 4.43674 4.46776 4.51231 4.52622 4.61604 4.62312 4.66282 4.76279 4.77304 4.80182 4.84758 4.95531 5.02450 5.25646 5.26285 5.29068 5.41689 5.48513 5.53915 5.93987 5.98181 6.13075 6.37283 6.47659 6.67399 7.22253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.062 4.062 3 Si 0.798 3.202 4 C -0.018 4.018 5 C -0.202 4.202 6 C -0.200 4.200 7 C 0.034 3.966 8 C -0.066 4.066 9 C 0.514 3.486 10 O -0.574 6.574 11 N -0.701 5.701 12 C 0.127 3.873 13 H 0.089 0.911 14 C -0.135 4.135 15 C -0.092 4.092 16 H 0.127 0.873 17 S -0.136 6.136 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.133 4.133 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.105 4.105 25 N -0.536 5.536 26 H 0.385 0.615 27 H 0.128 0.872 28 H -0.293 1.293 29 H -0.296 1.296 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.419 0.581 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 -4.886 0.822 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.170 4.170 3 Si 0.702 3.298 4 C -0.132 4.132 5 C -0.227 4.227 6 C -0.225 4.225 7 C -0.081 4.081 8 C -0.106 4.106 9 C 0.302 3.698 10 O -0.453 6.453 11 N -0.354 5.354 12 C 0.019 3.981 13 H 0.107 0.893 14 C -0.176 4.176 15 C -0.221 4.221 16 H 0.145 0.855 17 S 0.111 5.889 18 C -0.210 4.210 19 C -0.163 4.163 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.145 4.145 24 C -0.144 4.144 25 N -0.132 5.132 26 H 0.234 0.766 27 H 0.146 0.854 28 H -0.220 1.220 29 H -0.224 1.224 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.257 0.743 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.913 -4.181 1.148 5.840 hybrid contribution -0.114 -0.287 -0.359 0.474 sum 3.799 -4.468 0.789 5.918 Atomic orbital electron populations 1.86533 1.18918 1.80539 1.50202 1.24993 0.83045 1.12176 0.96789 0.93455 0.90058 0.70298 0.76018 1.20896 1.06044 0.85816 1.00419 1.20909 1.04924 1.00625 0.96241 1.20849 1.06824 0.93083 1.01706 1.19919 1.01231 0.97527 0.89386 1.20261 0.99909 0.94098 0.96362 1.21072 0.84722 0.82210 0.81807 1.90767 1.49621 1.34542 1.70344 1.45539 1.36011 1.17482 1.36325 1.21635 0.90749 0.98210 0.87505 0.89317 1.23761 1.03076 0.93534 0.97244 1.25167 1.03987 0.98686 0.94240 0.85510 1.85638 1.12853 1.78661 1.11780 1.21900 0.97278 1.03579 0.98210 1.21390 0.92166 1.01800 1.00977 1.21421 0.98384 0.98401 0.94570 1.21551 0.98969 0.98790 0.96046 1.21413 0.92269 0.98638 1.00569 1.21002 0.99509 1.01066 0.92952 1.23125 0.98415 0.96577 0.96300 1.41880 1.40862 1.11007 1.19438 0.76552 0.85432 1.21970 1.22431 0.83262 0.84143 0.85123 0.83630 0.74339 0.88702 0.90495 0.84631 0.83709 0.83879 0.83892 0.85488 0.87643 0.87834 0.74342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.56 12.88 -148.98 -1.92 -4.47 16 2 C -0.06 -0.06 3.08 71.24 0.22 0.16 16 3 Si 0.80 -0.15 30.59 68.60 2.10 1.95 16 4 C -0.02 -0.06 6.50 41.08 0.27 0.21 16 5 C -0.20 -0.83 9.37 22.14 0.21 -0.62 16 6 C -0.20 -0.83 10.76 22.14 0.24 -0.59 16 7 C 0.03 0.04 5.66 41.08 0.23 0.28 16 8 C -0.07 0.43 6.24 29.10 0.18 0.62 16 9 C 0.51 -0.27 7.82 87.66 0.69 0.42 16 10 O -0.57 -6.22 15.65 -3.03 -0.05 -6.27 16 11 N -0.70 4.51 5.26 -440.04 -2.32 2.20 16 12 C 0.13 -0.42 4.29 45.52 0.20 -0.23 16 13 H 0.09 0.18 7.50 -2.39 -0.02 0.16 16 14 C -0.14 0.35 7.37 31.21 0.23 0.58 16 15 C -0.09 0.42 2.90 31.21 0.09 0.51 16 16 H 0.13 -0.96 6.88 -2.39 -0.02 -0.98 16 17 S -0.14 -0.23 21.72 -56.49 -1.23 -1.46 16 18 C -0.10 -0.33 6.11 22.62 0.14 -0.19 16 19 C -0.14 -0.10 9.32 22.41 0.21 0.11 16 20 C -0.11 0.05 10.04 22.25 0.22 0.28 16 21 C -0.13 0.03 10.04 22.30 0.22 0.25 16 22 C -0.11 -0.12 10.04 22.25 0.22 0.11 16 23 C -0.12 -0.43 9.79 22.41 0.22 -0.21 16 24 C -0.10 0.66 7.41 31.12 0.23 0.89 16 25 N -0.54 -0.83 6.07 -171.11 -1.04 -1.87 16 26 H 0.39 0.42 8.70 -74.06 -0.64 -0.22 16 27 H 0.13 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H -0.29 -1.65 7.11 99.48 0.71 -0.94 16 29 H -0.30 -1.83 7.11 99.48 0.71 -1.13 16 30 H 0.15 0.15 6.22 -2.91 -0.02 0.13 16 31 H 0.14 0.29 8.06 -2.91 -0.02 0.26 16 32 H 0.13 -1.62 8.14 -2.39 -0.02 -1.64 16 33 H 0.15 -1.74 8.14 -2.39 -0.02 -1.76 16 34 H 0.42 -5.58 8.70 -92.71 -0.81 -6.38 16 35 H 0.09 -0.02 8.10 -2.39 -0.02 -0.04 16 36 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.14 -0.43 5.64 -2.91 -0.02 -0.45 16 38 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 39 H 0.14 -0.64 8.06 -2.91 -0.02 -0.66 16 40 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 41 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 43 H 0.10 -0.52 8.10 -2.38 -0.02 -0.54 16 44 H 0.42 -0.78 8.96 -92.71 -0.83 -1.61 16 Total: 0.00 -23.92 382.78 -1.62 -25.55 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -1.19 Total: -18.19 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.02 Total: 2.56 kcal Atomic # 7 Polarization: 3.68 SS G_CDS: -3.36 Total: 0.32 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.97 Total: -10.74 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: 2.10 Total: 1.95 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.23 Total: -1.46 kcal Total: -23.92 -1.62 -25.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_14644196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.349 kcal (2) G-P(sol) polarization free energy of solvation -23.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds