Wall clock time and date at job start Sat Mar 6 2021 19:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.46997 * 2 1 4 4 C 1.50695 * 109.47413 * 239.99722 * 2 1 3 5 5 C 1.38714 * 120.03037 * 284.97715 * 4 2 1 6 6 O 1.35901 * 120.05102 * 0.04686 * 5 4 2 7 7 C 1.42904 * 116.99755 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46807 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00366 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99562 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99741 * 179.97438 * 10 8 7 12 12 H 1.08996 * 112.84751 * 336.19432 * 11 10 8 13 13 C 1.53786 * 113.61076 * 107.50286 * 11 10 8 14 14 C 1.53777 * 87.08179 * 89.11670 * 13 11 10 15 15 H 1.09003 * 113.68642 * 270.87003 * 14 13 11 16 16 S 1.81396 * 113.61754 * 139.98132 * 14 13 11 17 17 C 1.76200 * 103.00237 * 87.49724 * 16 14 13 18 18 C 1.38978 * 120.07934 * 359.73028 * 17 16 14 19 19 C 1.38083 * 119.91505 * 179.72249 * 18 17 16 20 20 C 1.38299 * 120.08408 * 0.56986 * 19 18 17 21 21 C 1.38306 * 120.15700 * 359.67883 * 20 19 18 22 22 C 1.38077 * 120.08263 * 0.04750 * 21 20 19 23 23 C 1.53777 * 113.61294 * 204.99605 * 11 10 8 24 24 C 1.38749 * 119.89136 * 180.02562 * 5 4 2 25 25 C 1.38126 * 119.94135 * 359.97438 * 24 5 4 26 26 C 1.38290 * 120.05768 * 0.02562 * 25 24 5 27 27 C 1.38165 * 120.02630 * 104.99695 * 4 2 1 28 28 H 0.96699 * 113.99544 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46755 * 119.99574 * 2 1 3 30 30 H 1.48502 * 110.00025 * 58.67803 * 3 2 1 31 31 H 1.48497 * 110.00178 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46792 * 299.99749 * 7 6 5 33 33 H 1.08993 * 109.47273 * 59.99547 * 7 6 5 34 34 H 0.97003 * 120.00100 * 359.97438 * 10 8 7 35 35 H 1.09004 * 113.60608 * 203.66326 * 13 11 10 36 36 H 1.09000 * 113.61710 * 334.56084 * 13 11 10 37 37 H 1.08000 * 120.03941 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.95554 * 180.27424 * 19 18 17 39 39 H 1.07998 * 119.92189 * 179.70458 * 20 19 18 40 40 H 1.08002 * 119.95976 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.04057 * 179.97438 * 22 21 20 42 42 H 1.09003 * 113.61203 * 25.43193 * 23 11 10 43 43 H 1.08998 * 113.61637 * 156.25439 * 23 11 10 44 44 H 1.07998 * 120.02700 * 180.02562 * 24 5 4 45 45 H 1.08005 * 119.97091 * 180.02562 * 25 24 5 46 46 H 1.07995 * 119.94278 * 180.27458 * 26 25 24 47 47 H 1.07997 * 119.97398 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 -1.2304 5 6 1.8703 -2.0941 -1.3066 6 8 1.3564 -2.8107 -0.2725 7 6 1.3253 -4.2317 -0.4201 8 6 0.7278 -4.8521 0.8164 9 8 0.3640 -4.1469 1.7336 10 7 0.5968 -6.1908 0.9027 11 6 0.0165 -6.7940 2.1050 12 1 0.1110 -6.1583 2.9853 13 6 -1.4021 -7.3485 1.8926 14 6 -0.7380 -8.6738 1.4836 15 1 -0.5121 -8.7403 0.4193 16 16 -1.5966 -10.1419 2.1144 17 6 -2.7991 -10.4643 0.8675 18 6 -2.8835 -9.6403 -0.2484 19 6 -3.8233 -9.8994 -1.2263 20 6 -4.6877 -10.9704 -1.0906 21 6 -4.6100 -11.7895 0.0211 22 6 -3.6691 -11.5398 1.0003 23 6 0.4635 -8.2460 2.3428 24 6 2.3342 -2.7453 -2.4406 25 6 2.8551 -2.0146 -3.4907 26 6 2.9150 -0.6352 -3.4122 27 6 2.4538 0.0159 -2.2833 28 1 -0.3932 -0.8834 0.0004 29 1 1.7923 -0.5138 0.8901 30 1 1.5354 2.4771 1.1921 31 1 3.5349 1.7703 0.0006 32 1 0.7195 -4.4937 -1.2876 33 1 2.3399 -4.6048 -0.5594 34 1 0.8868 -6.7548 0.1687 35 1 -1.9858 -7.4176 2.8106 36 1 -1.9438 -6.8627 1.0810 37 1 -2.2121 -8.8007 -0.3526 38 1 -3.8865 -9.2621 -2.0960 39 1 -5.4250 -11.1678 -1.8547 40 1 -5.2864 -12.6252 0.1236 41 1 -3.6093 -12.1796 1.8683 42 1 1.4279 -8.4850 1.8946 43 1 0.3912 -8.5602 3.3841 44 1 2.2872 -3.8225 -2.5025 45 1 3.2159 -2.5210 -4.3738 46 1 3.3185 -0.0655 -4.2361 47 1 2.5016 1.0932 -2.2244 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_2989392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:47:32 Heat of formation + Delta-G solvation = -10.880614 kcal Electronic energy + Delta-G solvation = -29846.447861 eV Core-core repulsion = 25667.585344 eV Total energy + Delta-G solvation = -4178.862517 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.123 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78081 -41.10206 -39.87429 -39.47393 -38.35718 -37.49221 -34.58649 -32.73594 -32.08452 -31.91850 -31.28315 -29.59665 -26.95084 -26.68374 -26.40353 -23.87444 -23.67707 -23.36683 -22.61975 -21.95263 -20.78103 -19.46599 -18.74277 -18.56616 -18.29043 -17.79396 -17.51362 -17.20268 -16.79317 -16.70717 -16.41128 -15.93045 -15.81121 -15.76854 -15.48913 -15.33755 -15.08890 -14.89640 -14.68136 -14.44264 -14.27830 -14.14733 -13.86049 -13.82156 -13.65764 -13.41524 -13.23128 -12.73850 -12.55790 -12.27217 -12.21744 -12.13160 -12.08394 -11.92983 -11.72440 -11.31264 -11.22611 -11.11846 -11.04287 -10.76570 -10.29392 -9.99634 -9.95272 -9.25658 -8.42825 -4.95702 0.20091 0.23351 0.35819 0.38398 0.50640 1.31189 1.33231 1.34571 1.39615 1.57156 1.93645 2.48112 2.69615 2.71453 3.20083 3.24135 3.42000 3.58879 3.60762 3.75215 3.81074 3.88799 3.90160 3.95973 3.97864 4.02334 4.09347 4.19323 4.21446 4.31949 4.37734 4.45249 4.49674 4.51026 4.59506 4.60422 4.64612 4.70550 4.74749 4.82009 4.89339 4.94583 5.00760 5.24189 5.24655 5.35868 5.39052 5.40242 5.52562 5.52667 5.72198 5.92480 6.19533 6.35855 6.49181 7.01756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.822 3.178 4 C -0.166 4.166 5 C 0.118 3.882 6 O -0.319 6.319 7 C 0.038 3.962 8 C 0.518 3.482 9 O -0.567 6.567 10 N -0.692 5.692 11 C 0.126 3.874 12 H 0.093 0.907 13 C -0.135 4.135 14 C -0.094 4.094 15 H 0.128 0.872 16 S -0.133 6.133 17 C -0.097 4.097 18 C -0.140 4.140 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.104 4.104 24 C -0.208 4.208 25 C -0.078 4.078 26 C -0.152 4.152 27 C -0.082 4.082 28 H 0.369 0.631 29 H 0.052 0.948 30 H -0.302 1.302 31 H -0.261 1.261 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.421 0.579 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -4.292 -8.541 9.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.193 4.193 3 Si 0.723 3.277 4 C -0.167 4.167 5 C 0.073 3.927 6 O -0.233 6.233 7 C -0.039 4.039 8 C 0.304 3.696 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.018 3.982 12 H 0.111 0.889 13 C -0.176 4.176 14 C -0.223 4.223 15 H 0.146 0.854 16 S 0.114 5.886 17 C -0.210 4.210 18 C -0.164 4.164 19 C -0.128 4.128 20 C -0.154 4.154 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.226 4.226 25 C -0.096 4.096 26 C -0.170 4.170 27 C -0.099 4.099 28 H 0.217 0.783 29 H 0.070 0.930 30 H -0.230 1.230 31 H -0.187 1.187 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.260 0.740 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.175 0.825 45 H 0.173 0.827 46 H 0.172 0.828 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.321 -3.091 -6.192 7.676 hybrid contribution -0.487 -1.627 -0.400 1.745 sum 2.833 -4.718 -6.592 8.587 Atomic orbital electron populations 1.86648 1.17756 1.33762 1.97240 1.25611 0.84399 1.14199 0.95139 0.92323 0.76497 0.73464 0.85407 1.19787 1.06577 0.91422 0.98883 1.19016 0.95313 0.90739 0.87595 1.86068 1.78259 1.19034 1.39928 1.22705 1.04675 0.79537 0.97016 1.20513 0.78019 0.82800 0.88242 1.90785 1.50038 1.62382 1.41236 1.45313 1.63327 1.05644 1.20357 1.21707 0.93640 0.94138 0.88671 0.88888 1.23735 0.96880 0.93749 1.03251 1.25132 0.99739 0.93313 1.04067 0.85407 1.85657 1.36945 1.37118 1.28922 1.21906 1.00687 0.99713 0.98676 1.21387 1.00923 1.00040 0.94010 1.21417 0.94704 0.97699 0.98992 1.21552 0.99874 0.95398 0.98551 1.21412 0.97832 0.99987 0.93644 1.21002 0.96005 0.97142 1.00350 1.23138 0.97333 0.92300 1.01536 1.21583 1.05272 1.01871 0.93863 1.21430 0.95622 0.94189 0.98361 1.21471 1.01639 0.95209 0.98642 1.21114 0.96274 1.00181 0.92334 0.78274 0.93042 1.23021 1.18701 0.85574 0.85900 0.74036 0.88384 0.90391 0.84605 0.83763 0.83913 0.83900 0.85457 0.87496 0.87563 0.82495 0.82740 0.82847 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.44 12.65 -148.98 -1.89 -7.33 16 2 C -0.09 -0.67 2.33 71.23 0.17 -0.50 16 3 Si 0.82 3.16 30.17 68.60 2.07 5.23 16 4 C -0.17 -0.77 5.28 -19.77 -0.10 -0.87 16 5 C 0.12 0.34 6.62 22.51 0.15 0.49 16 6 O -0.32 -1.36 8.57 -73.40 -0.63 -1.99 16 7 C 0.04 -0.19 5.22 71.23 0.37 0.18 16 8 C 0.52 0.24 7.91 87.66 0.69 0.93 16 9 O -0.57 -6.99 16.10 16.01 0.26 -6.73 16 10 N -0.69 4.63 5.26 -440.03 -2.32 2.32 16 11 C 0.13 -0.49 4.32 45.52 0.20 -0.29 16 12 H 0.09 0.13 7.46 -2.39 -0.02 0.12 16 13 C -0.14 0.46 7.35 31.12 0.23 0.69 16 14 C -0.09 0.51 2.88 31.12 0.09 0.60 16 15 H 0.13 -1.10 6.88 -2.39 -0.02 -1.12 16 16 S -0.13 -0.14 21.72 -56.49 -1.23 -1.37 16 17 C -0.10 -0.28 6.11 22.62 0.14 -0.14 16 18 C -0.14 -0.03 9.32 22.41 0.21 0.18 16 19 C -0.11 0.09 10.04 22.25 0.22 0.31 16 20 C -0.13 0.06 10.04 22.30 0.22 0.29 16 21 C -0.11 -0.09 10.04 22.25 0.22 0.14 16 22 C -0.12 -0.38 9.79 22.41 0.22 -0.16 16 23 C -0.10 0.73 7.41 31.12 0.23 0.96 16 24 C -0.21 0.65 9.04 22.37 0.20 0.85 16 25 C -0.08 0.34 10.04 22.26 0.22 0.56 16 26 C -0.15 0.47 10.04 22.28 0.22 0.69 16 27 C -0.08 -0.02 8.66 22.25 0.19 0.17 16 28 H 0.37 2.89 8.61 -74.06 -0.64 2.26 16 29 H 0.05 0.58 7.83 -2.39 -0.02 0.56 16 30 H -0.30 -3.40 7.11 99.48 0.71 -2.69 16 31 H -0.26 -1.35 7.11 99.48 0.71 -0.64 16 32 H 0.13 -1.43 7.66 -2.39 -0.02 -1.44 16 33 H 0.12 -1.32 7.66 -2.39 -0.02 -1.34 16 34 H 0.42 -5.99 8.70 -92.71 -0.81 -6.80 16 35 H 0.10 -0.11 8.10 -2.38 -0.02 -0.13 16 36 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.14 -0.53 5.64 -2.91 -0.02 -0.54 16 38 H 0.14 -0.78 8.06 -2.91 -0.02 -0.80 16 39 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 40 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 41 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 43 H 0.11 -0.62 8.10 -2.39 -0.02 -0.64 16 44 H 0.16 -1.56 6.30 -2.91 -0.02 -1.57 16 45 H 0.15 -1.51 8.06 -2.91 -0.02 -1.53 16 46 H 0.15 -1.23 8.06 -2.91 -0.02 -1.26 16 47 H 0.15 -0.64 5.13 -2.91 -0.01 -0.65 16 Total: 0.00 -25.33 403.85 -0.02 -25.35 By element: Atomic # 1 Polarization: -20.15 SS G_CDS: -0.39 Total: -20.54 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.10 Total: 5.07 kcal Atomic # 7 Polarization: 4.63 SS G_CDS: -2.32 Total: 2.32 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -2.26 Total: -16.05 kcal Atomic # 14 Polarization: 3.16 SS G_CDS: 2.07 Total: 5.23 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.23 Total: -1.37 kcal Total: -25.33 -0.02 -25.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_2989392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.466 kcal (2) G-P(sol) polarization free energy of solvation -25.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds