Wall clock time and date at job start Sat Mar 6 2021 19:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37637 * 125.67179 * 2 1 4 4 C 1.46676 * 126.22897 * 0.02562 * 3 2 1 5 5 O 1.21694 * 119.99878 * 5.09403 * 4 3 2 6 6 N 1.34773 * 120.00011 * 185.09464 * 4 3 2 7 7 C 1.46499 * 120.00210 * 185.14401 * 6 4 3 8 8 H 1.09004 * 112.84870 * 23.80356 * 7 6 4 9 9 C 1.53774 * 113.61670 * 155.00032 * 7 6 4 10 10 C 1.53782 * 87.08111 * 89.12015 * 9 7 6 11 11 H 1.09002 * 113.61139 * 270.80064 * 10 9 7 12 12 S 1.81402 * 113.61408 * 139.98333 * 10 9 7 13 13 C 1.76203 * 102.99804 * 174.99779 * 12 10 9 14 14 C 1.38980 * 120.08247 * 359.72657 * 13 12 10 15 15 C 1.38073 * 119.91966 * 179.71937 * 14 13 12 16 16 C 1.38311 * 120.08054 * 0.57391 * 15 14 13 17 17 C 1.38298 * 120.16040 * 359.67775 * 16 15 14 18 18 C 1.38087 * 120.08101 * 0.04301 * 17 16 15 19 19 C 1.53774 * 87.08097 * 25.43319 * 10 9 7 20 20 C 1.37893 * 107.54837 * 179.69614 * 3 2 1 21 21 C 1.39877 * 107.08800 * 0.42288 * 20 3 2 22 22 Br 1.89102 * 126.07366 * 179.83807 * 21 20 3 23 23 C 1.35505 * 107.85367 * 359.57296 * 21 20 3 24 24 C 1.50700 * 125.56978 * 180.26680 * 23 21 20 25 25 O 1.42908 * 109.47147 * 149.97623 * 24 23 21 26 26 Si 1.86294 * 109.47551 * 29.97396 * 24 23 21 27 27 H 1.09004 * 109.47055 * 265.42619 * 1 2 3 28 28 H 1.08999 * 109.47597 * 25.42362 * 1 2 3 29 29 H 1.08995 * 109.47272 * 145.42953 * 1 2 3 30 30 H 0.97003 * 119.99982 * 5.14595 * 6 4 3 31 31 H 1.09003 * 113.61439 * 203.66654 * 9 7 6 32 32 H 1.09000 * 113.61813 * 334.48924 * 9 7 6 33 33 H 1.08001 * 120.03449 * 359.97438 * 14 13 12 34 34 H 1.08002 * 119.96005 * 180.27586 * 15 14 13 35 35 H 1.08001 * 119.91512 * 179.70200 * 16 15 14 36 36 H 1.07994 * 119.96091 * 180.02562 * 17 16 15 37 37 H 1.08001 * 120.04063 * 179.97438 * 18 17 16 38 38 H 1.09004 * 113.61562 * 220.01917 * 19 10 9 39 39 H 1.08999 * 113.61304 * 89.11788 * 19 10 9 40 40 H 1.07994 * 126.45420 * 180.26304 * 20 3 2 41 41 H 1.09001 * 109.47207 * 269.97515 * 24 23 21 42 42 H 0.96701 * 113.99613 * 299.99919 * 25 24 23 43 43 H 1.48504 * 109.99892 * 58.67978 * 26 24 23 44 44 H 1.48494 * 110.00370 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2676 1.1181 0.0000 4 6 1.8120 2.5123 0.0005 5 8 0.6252 2.7645 0.0946 6 7 2.7076 3.5140 -0.1032 7 6 2.2660 4.9062 0.0104 8 1 1.3343 5.0107 0.5666 9 6 3.3723 5.8675 0.4758 10 6 3.7320 6.0469 -1.0085 11 1 4.4626 5.3238 -1.3712 12 16 4.1507 7.7550 -1.4534 13 6 4.6500 7.6149 -3.1374 14 6 4.6466 6.3744 -3.7641 15 6 5.0330 6.2694 -5.0855 16 6 5.4344 7.3949 -5.7820 17 6 5.4440 8.6301 -5.1601 18 6 5.0535 8.7437 -3.8405 19 6 2.2762 5.6668 -1.3261 20 6 3.5781 0.6892 0.0070 21 6 3.5529 -0.7093 0.0013 22 35 5.0610 -1.8502 0.0025 23 6 2.2558 -1.1014 0.0008 24 6 1.7714 -2.5285 0.0012 25 8 0.5133 -2.6043 0.6747 26 14 3.0120 -3.6053 0.8797 27 1 -0.3633 -0.0820 1.0244 28 1 -0.3634 0.9281 -0.4412 29 1 -0.3633 -0.8462 -0.5831 30 1 3.6447 3.3132 -0.2531 31 1 2.9931 6.7748 0.9460 32 1 4.1543 5.3829 1.0604 33 1 4.3382 5.4944 -3.2193 34 1 5.0263 5.3064 -5.5745 35 1 5.7406 7.3089 -6.8141 36 1 5.7577 9.5069 -5.7071 37 1 5.0616 9.7086 -3.3554 38 1 2.1740 5.0199 -2.1975 39 1 1.5974 6.5193 -1.3486 40 1 4.4582 1.3151 0.0128 41 1 1.6547 -2.8728 -1.0264 42 1 0.5424 -2.3126 1.5962 43 1 3.2039 -3.1267 2.2723 44 1 2.5457 -5.0151 0.8874 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_5000100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:33 Heat of formation + Delta-G solvation = 45.951247 kcal Electronic energy + Delta-G solvation = -28980.003983 eV Core-core repulsion = 24845.270300 eV Total energy + Delta-G solvation = -4134.733683 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.029 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94601 -41.10051 -39.83632 -39.17327 -37.98386 -35.01677 -34.32051 -32.34745 -32.02534 -31.88669 -31.16200 -27.69337 -27.37405 -26.88633 -26.00559 -23.75752 -23.59924 -23.25683 -21.78019 -20.91185 -20.48325 -19.08278 -18.70374 -18.45243 -17.74691 -17.27139 -17.05253 -16.59923 -16.34303 -16.14396 -15.96138 -15.77234 -15.46836 -15.36384 -15.10297 -14.87918 -14.60539 -14.55915 -14.39642 -14.15494 -14.11696 -13.80077 -13.71624 -13.59507 -13.23108 -13.16083 -12.81435 -12.54805 -12.24400 -12.12750 -12.07917 -11.88391 -11.67671 -11.65620 -11.26516 -11.06100 -10.90384 -10.73517 -10.29329 -9.96844 -9.90157 -9.37360 -8.38661 -4.70387 0.11245 0.23008 0.34158 0.38613 0.54944 0.88310 1.17663 1.38455 1.42813 1.54309 1.91306 2.07751 2.19751 2.74254 3.06340 3.25712 3.26748 3.28872 3.48892 3.65605 3.75077 3.79886 3.92300 4.01157 4.06878 4.21962 4.22261 4.33747 4.38059 4.42157 4.47876 4.54064 4.59312 4.62154 4.65161 4.65661 4.77396 4.77800 4.87721 4.94420 5.03620 5.20397 5.27613 5.41280 5.43048 5.55265 5.55563 5.74614 5.95208 6.21836 6.32990 6.98470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.390 5.390 3 C -0.057 4.057 4 C 0.595 3.405 5 O -0.572 6.572 6 N -0.686 5.686 7 C 0.130 3.870 8 H 0.101 0.899 9 C -0.104 4.104 10 C -0.096 4.096 11 H 0.125 0.875 12 S -0.130 6.130 13 C -0.097 4.097 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.135 4.135 20 C -0.089 4.089 21 C -0.191 4.191 22 Br 0.090 6.910 23 C 0.058 3.942 24 C -0.040 4.040 25 O -0.542 6.542 26 Si 0.628 3.372 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.418 0.582 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.188 0.812 41 H 0.141 0.859 42 H 0.386 0.614 43 H -0.280 1.280 44 H -0.270 1.270 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 0.622 -1.743 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.062 5.062 3 C -0.171 4.171 4 C 0.384 3.616 5 O -0.453 6.453 6 N -0.337 5.337 7 C 0.023 3.977 8 H 0.119 0.881 9 C -0.143 4.143 10 C -0.225 4.225 11 H 0.143 0.857 12 S 0.117 5.883 13 C -0.209 4.209 14 C -0.163 4.163 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.129 4.129 18 C -0.145 4.145 19 C -0.175 4.175 20 C -0.116 4.116 21 C -0.276 4.276 22 Br 0.174 6.826 23 C -0.065 4.065 24 C -0.151 4.151 25 O -0.349 6.349 26 Si 0.530 3.470 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.206 0.794 41 H 0.159 0.841 42 H 0.235 0.765 43 H -0.206 1.206 44 H -0.196 1.196 Dipole moment (debyes) X Y Z Total from point charges 3.751 0.666 -0.740 3.881 hybrid contribution -0.938 -0.440 -0.191 1.054 sum 2.812 0.226 -0.931 2.971 Atomic orbital electron populations 1.22439 0.74277 1.05555 1.04890 1.43919 1.07730 1.03875 1.50670 1.20112 0.90348 0.87631 1.19004 1.16931 0.85338 0.83699 0.75643 1.90822 1.17500 1.85015 1.51972 1.45153 1.11582 1.04370 1.72605 1.21738 0.99136 0.79398 0.97443 0.88131 1.23157 0.98399 0.99815 0.92944 1.25151 1.00497 0.95219 1.01649 0.85696 1.85612 1.81707 1.14350 1.06654 1.21910 1.03948 0.97072 0.98016 1.21379 1.02626 0.96075 0.96265 1.21410 0.97645 0.99840 0.93971 1.21544 1.00031 0.92631 1.01208 1.21406 0.98440 0.98850 0.94179 1.21007 1.00708 0.97563 0.95200 1.23734 0.94640 1.00749 0.98412 1.21516 0.95587 0.92535 1.01958 1.20693 0.90599 0.95019 1.21295 1.96324 1.32657 1.56328 1.97336 1.21021 0.89682 0.90194 1.05555 1.24697 0.93301 0.92636 1.04440 1.86559 1.29656 1.88826 1.29839 0.92763 0.92346 0.77954 0.83944 0.89583 0.88835 0.88063 0.74370 0.87225 0.87547 0.84707 0.83907 0.83973 0.83904 0.85385 0.90662 0.88061 0.79445 0.84142 0.76525 1.20560 1.19613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 9.28 127.77 1.19 1.22 16 2 N -0.39 -0.60 3.16 -519.61 -1.64 -2.24 16 3 C -0.06 -0.02 6.88 40.36 0.28 0.26 16 4 C 0.60 0.91 7.77 86.45 0.67 1.58 16 5 O -0.57 -4.97 14.28 -4.33 -0.06 -5.03 16 6 N -0.69 3.60 5.24 -444.01 -2.32 1.28 16 7 C 0.13 -0.60 4.29 45.52 0.20 -0.40 16 8 H 0.10 -0.09 7.53 -2.39 -0.02 -0.11 16 9 C -0.10 0.78 7.42 31.12 0.23 1.01 16 10 C -0.10 0.52 2.89 31.12 0.09 0.61 16 11 H 0.13 -0.98 6.85 -2.39 -0.02 -1.00 16 12 S -0.13 -0.10 21.72 -56.49 -1.23 -1.32 16 13 C -0.10 -0.28 6.11 22.62 0.14 -0.14 16 14 C -0.14 -0.09 9.32 22.41 0.21 0.12 16 15 C -0.11 0.03 10.04 22.25 0.22 0.26 16 16 C -0.13 0.02 10.04 22.30 0.22 0.25 16 17 C -0.11 -0.10 10.04 22.25 0.22 0.13 16 18 C -0.12 -0.37 9.79 22.41 0.22 -0.15 16 19 C -0.13 0.52 7.38 31.12 0.23 0.75 16 20 C -0.09 0.33 10.33 22.58 0.23 0.56 16 21 C -0.19 0.26 6.16 22.03 0.14 0.40 16 22 Br 0.09 -0.32 28.24 -20.37 -0.58 -0.90 16 23 C 0.06 0.03 6.15 41.35 0.25 0.28 16 24 C -0.04 0.00 2.90 71.24 0.21 0.21 16 25 O -0.54 -0.50 10.50 -148.98 -1.56 -2.06 16 26 Si 0.63 1.25 27.10 68.60 1.86 3.10 16 27 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 28 H 0.09 0.32 6.18 -2.39 -0.01 0.30 16 29 H 0.10 -0.08 7.11 -2.39 -0.02 -0.09 16 30 H 0.42 -4.60 7.65 -92.71 -0.71 -5.31 16 31 H 0.11 -0.77 8.10 -2.39 -0.02 -0.79 16 32 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 33 H 0.14 -0.42 5.64 -2.91 -0.02 -0.43 16 34 H 0.14 -0.65 8.06 -2.91 -0.02 -0.68 16 35 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 36 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 37 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.10 -0.23 8.10 -2.39 -0.02 -0.25 16 40 H 0.19 -2.02 7.49 -2.91 -0.02 -2.04 16 41 H 0.14 -0.34 7.96 -2.39 -0.02 -0.36 16 42 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 43 H -0.28 -2.00 7.11 99.48 0.71 -1.29 16 44 H -0.27 -2.25 7.11 99.48 0.71 -1.54 16 Total: 0.00 -17.20 389.20 -0.84 -18.04 By element: Atomic # 1 Polarization: -17.54 SS G_CDS: -0.25 Total: -17.80 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.95 Total: 6.93 kcal Atomic # 7 Polarization: 3.00 SS G_CDS: -3.97 Total: -0.96 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -1.63 Total: -7.09 kcal Atomic # 14 Polarization: 1.25 SS G_CDS: 1.86 Total: 3.10 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.23 Total: -1.32 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.58 Total: -0.90 kcal Total: -17.20 -0.84 -18.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_5000100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.993 kcal (2) G-P(sol) polarization free energy of solvation -17.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds