Wall clock time and date at job start Sat Mar 6 2021 19:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36000 * 116.99802 * 2 1 4 4 C 1.39155 * 120.07431 * 180.02562 * 3 2 1 5 5 O 1.35995 * 120.07059 * 359.95295 * 4 3 2 6 6 C 1.42895 * 117.00054 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47446 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99701 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99629 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85099 * 23.81143 * 10 9 7 12 12 C 1.53790 * 113.61249 * 155.00252 * 10 9 7 13 13 C 1.53789 * 87.07756 * 89.11756 * 12 10 9 14 14 H 1.08997 * 113.61213 * 270.88462 * 13 12 10 15 15 S 1.81394 * 113.61281 * 140.06563 * 13 12 10 16 16 C 1.76201 * 103.00077 * 174.99821 * 15 13 12 17 17 C 1.38967 * 120.07891 * 359.72803 * 16 15 13 18 18 C 1.38089 * 119.91887 * 179.72142 * 17 16 15 19 19 C 1.38299 * 120.07568 * 0.57042 * 18 17 16 20 20 C 1.38300 * 120.16280 * 359.68477 * 19 18 17 21 21 C 1.38081 * 120.08016 * 0.03791 * 20 19 18 22 22 C 1.53778 * 87.08172 * 25.43122 * 13 12 10 23 23 C 1.38558 * 119.85540 * 179.97438 * 4 3 2 24 24 C 1.38247 * 119.99917 * 0.02562 * 23 4 3 25 25 C 1.38255 * 120.14468 * 359.97438 * 24 23 4 26 26 C 1.50700 * 119.92343 * 180.02562 * 25 24 23 27 27 O 1.42901 * 109.46960 * 245.00106 * 26 25 24 28 28 Si 1.86300 * 109.47377 * 4.99947 * 26 25 24 29 29 C 1.38242 * 120.14765 * 359.97438 * 25 24 23 30 30 H 1.08993 * 109.47794 * 300.00298 * 1 2 3 31 31 H 1.09005 * 109.46921 * 60.00316 * 1 2 3 32 32 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47245 * 300.00284 * 6 5 4 34 34 H 1.09002 * 109.46915 * 59.99779 * 6 5 4 35 35 H 0.96996 * 119.99911 * 0.02562 * 9 7 6 36 36 H 1.08995 * 113.61172 * 203.66539 * 12 10 9 37 37 H 1.08997 * 113.61308 * 334.49088 * 12 10 9 38 38 H 1.08005 * 120.04006 * 359.97438 * 17 16 15 39 39 H 1.08001 * 119.95713 * 180.27636 * 18 17 16 40 40 H 1.08005 * 119.91923 * 179.70253 * 19 18 17 41 41 H 1.08006 * 119.96210 * 180.02562 * 20 19 18 42 42 H 1.08005 * 120.03989 * 179.97438 * 21 20 19 43 43 H 1.09000 * 113.61911 * 220.01318 * 22 13 12 44 44 H 1.09009 * 113.61481 * 89.11283 * 22 13 12 45 45 H 1.07996 * 120.00021 * 180.02562 * 23 4 3 46 46 H 1.07998 * 119.92703 * 180.27362 * 24 23 4 47 47 H 1.08994 * 109.47427 * 125.00100 * 26 25 24 48 48 H 0.96704 * 113.99738 * 180.02562 * 27 26 25 49 49 H 1.48507 * 109.99914 * 300.00305 * 28 26 25 50 50 H 1.48503 * 109.99954 * 61.31784 * 28 26 25 51 51 H 1.07998 * 119.99489 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 -0.0005 5 8 4.1795 0.1478 -0.0001 6 6 5.6002 0.3008 -0.0013 7 6 6.2519 -1.0580 -0.0012 8 8 5.5670 -2.0589 -0.0007 9 7 7.5957 -1.1609 -0.0027 10 6 8.2291 -2.4819 -0.0021 11 1 7.5830 -3.2614 -0.4060 12 6 9.6463 -2.4858 -0.5993 13 6 10.1593 -2.1803 0.8180 14 1 10.2156 -1.1151 1.0417 15 16 11.6792 -3.0719 1.2485 16 6 12.0892 -2.4152 2.8313 17 6 11.2848 -1.4415 3.4110 18 6 11.6060 -0.9333 4.6541 19 6 12.7332 -1.3838 5.3169 20 6 13.5389 -2.3489 4.7408 21 6 13.2208 -2.8658 3.5005 22 6 8.8792 -2.8528 1.3413 23 6 4.0602 2.5234 -0.0011 24 6 3.3028 3.6800 -0.0005 25 6 1.9222 3.6058 0.0000 26 6 1.1014 4.8696 0.0000 27 8 0.3650 4.9593 1.2213 28 14 2.2305 6.3434 -0.1538 29 6 1.2931 2.3748 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 5.9059 0.8499 -0.8920 34 1 5.9071 0.8514 0.8880 35 1 8.1434 -0.3604 -0.0035 36 1 9.9586 -3.4597 -0.9762 37 1 9.8221 -1.6799 -1.3118 38 1 10.4073 -1.0856 2.8916 39 1 10.9789 -0.1798 5.1072 40 1 12.9846 -0.9811 6.2870 41 1 14.4182 -2.6987 5.2614 42 1 13.8507 -3.6192 3.0509 43 1 8.4361 -2.3424 2.1965 44 1 8.9817 -3.9271 1.4949 45 1 5.1384 2.5841 -0.0019 46 1 3.7905 4.6435 -0.0054 47 1 0.4089 4.8531 -0.8415 48 1 -0.1874 5.7500 1.2904 49 1 3.1798 6.3774 0.9877 50 1 2.9789 6.2784 -1.4349 51 1 0.2145 2.3197 -0.0005 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_60476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:36 Heat of formation + Delta-G solvation = -39.480216 kcal Electronic energy + Delta-G solvation = -33804.230445 eV Core-core repulsion = 29149.907946 eV Total energy + Delta-G solvation = -4654.322499 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.138 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.96437 -41.33634 -39.95626 -39.81678 -39.07561 -38.72856 -37.04654 -34.58970 -32.25225 -32.07878 -31.92685 -31.62044 -29.79866 -28.51987 -26.95002 -26.55871 -26.06438 -23.89089 -23.70031 -23.42734 -22.62115 -21.94844 -20.78602 -19.86888 -18.75638 -18.66250 -18.44697 -18.25727 -17.91464 -17.60259 -17.41983 -16.98138 -16.71679 -16.44976 -16.32427 -16.04459 -15.83456 -15.78610 -15.60242 -15.50196 -15.15916 -14.90167 -14.47197 -14.42093 -14.22701 -14.21714 -14.07538 -13.87116 -13.66316 -13.61928 -13.55479 -13.24168 -12.83072 -12.46357 -12.33108 -12.27990 -12.26553 -12.13311 -12.09871 -11.93018 -11.85404 -11.72467 -11.17166 -11.07520 -10.77499 -10.31404 -10.29409 -10.00572 -9.91747 -9.04626 -8.43133 -4.90566 0.02883 0.09819 0.19251 0.34831 0.50254 1.29965 1.31568 1.32420 1.38095 1.68017 1.98159 2.20907 2.38728 2.42979 2.70519 3.20061 3.23899 3.34942 3.41462 3.58796 3.64353 3.69593 3.74952 3.84229 3.88270 3.90163 3.97145 3.99384 4.09437 4.14738 4.18306 4.25841 4.28780 4.38072 4.44239 4.45921 4.47922 4.50231 4.59675 4.61182 4.63825 4.70430 4.73886 4.82121 4.84355 4.89163 4.92082 4.99800 5.22250 5.23809 5.35510 5.39278 5.42481 5.51532 5.84532 5.91525 6.28544 6.41469 6.90979 7.01830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.085 3.915 4 C 0.085 3.915 5 O -0.309 6.309 6 C 0.032 3.968 7 C 0.519 3.481 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.125 3.875 11 H 0.094 0.906 12 C -0.102 4.102 13 C -0.095 4.095 14 H 0.127 0.873 15 S -0.130 6.130 16 C -0.097 4.097 17 C -0.141 4.141 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.133 4.133 25 C -0.085 4.085 26 C -0.081 4.081 27 O -0.565 6.565 28 Si 0.777 3.223 29 C -0.148 4.148 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.421 0.579 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.172 0.828 46 H 0.132 0.868 47 H 0.093 0.907 48 H 0.404 0.596 49 H -0.291 1.291 50 H -0.285 1.285 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 8.929 -0.934 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.039 3.961 4 C 0.040 3.960 5 O -0.223 6.223 6 C -0.045 4.045 7 C 0.305 3.695 8 O -0.443 6.443 9 N -0.346 5.346 10 C 0.017 3.983 11 H 0.112 0.888 12 C -0.142 4.142 13 C -0.224 4.224 14 H 0.145 0.855 15 S 0.117 5.883 16 C -0.210 4.210 17 C -0.164 4.164 18 C -0.129 4.129 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.177 4.177 23 C -0.178 4.178 24 C -0.151 4.151 25 C -0.085 4.085 26 C -0.190 4.190 27 O -0.375 6.375 28 Si 0.682 3.318 29 C -0.167 4.167 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.147 0.853 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.190 0.810 46 H 0.149 0.851 47 H 0.111 0.889 48 H 0.255 0.745 49 H -0.219 1.219 50 H -0.212 1.212 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.446 6.675 -1.675 7.032 hybrid contribution -0.440 0.522 0.875 1.110 sum 1.005 7.197 -0.801 7.311 Atomic orbital electron populations 1.23349 0.76448 1.05500 1.02330 1.86199 1.23353 1.26122 1.88876 1.18639 0.89745 0.85818 1.01893 1.18477 0.88418 0.86197 1.02912 1.86222 1.18146 1.28602 1.89292 1.22781 0.79454 0.95358 1.06934 1.20443 0.82883 0.90667 0.75490 1.90785 1.63980 1.39984 1.49538 1.45301 1.05061 1.09452 1.74823 1.21732 0.93829 0.85621 0.97073 0.88771 1.23138 0.91823 1.05293 0.93902 1.25134 0.92857 1.02839 1.01532 0.85510 1.85624 1.32138 1.54030 1.16546 1.21906 0.99381 1.00853 0.98839 1.21382 1.00237 0.97685 0.97142 1.21410 0.97363 0.99724 0.94397 1.21547 0.95153 0.97580 1.01095 1.21415 1.00231 0.96496 0.94676 1.21009 0.96368 1.01129 0.95929 1.23741 0.93772 1.02211 0.97959 1.21259 1.02013 0.89469 1.05094 1.20827 0.93281 0.98259 1.02746 1.19488 0.93446 0.94484 1.01130 1.24882 1.01583 1.02088 0.90460 1.86449 1.63813 1.50270 1.36976 0.94266 0.78730 0.82347 0.76441 1.21083 1.00987 0.90065 1.04524 0.91732 0.91281 0.86784 0.85496 0.85771 0.74037 0.87402 0.87458 0.84724 0.83906 0.83915 0.83815 0.85348 0.90571 0.88236 0.81038 0.85075 0.88899 0.74519 1.21904 1.21181 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.95 10.28 -79.69 -0.82 -4.77 16 3 C 0.08 0.86 6.70 22.57 0.15 1.02 16 4 C 0.09 0.72 6.70 22.57 0.15 0.87 16 5 O -0.31 -3.14 9.45 -67.08 -0.63 -3.77 16 6 C 0.03 -0.03 5.22 71.24 0.37 0.34 16 7 C 0.52 1.90 7.91 87.66 0.69 2.59 16 8 O -0.57 -8.97 16.10 16.01 0.26 -8.71 16 9 N -0.69 3.08 5.26 -440.02 -2.32 0.76 16 10 C 0.12 -0.28 4.32 45.52 0.20 -0.09 16 11 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 12 C -0.10 0.61 7.42 31.13 0.23 0.84 16 13 C -0.09 0.40 2.89 31.12 0.09 0.49 16 14 H 0.13 -0.92 6.85 -2.39 -0.02 -0.93 16 15 S -0.13 -0.24 21.72 -56.49 -1.23 -1.46 16 16 C -0.10 -0.36 6.11 22.62 0.14 -0.22 16 17 C -0.14 -0.19 9.32 22.41 0.21 0.02 16 18 C -0.11 -0.03 10.04 22.25 0.22 0.19 16 19 C -0.13 -0.05 10.04 22.30 0.22 0.17 16 20 C -0.11 -0.16 10.04 22.25 0.22 0.07 16 21 C -0.12 -0.45 9.79 22.41 0.22 -0.23 16 22 C -0.14 0.26 7.38 31.12 0.23 0.49 16 23 C -0.16 -0.40 9.04 22.35 0.20 -0.20 16 24 C -0.13 -0.52 8.66 22.28 0.19 -0.33 16 25 C -0.09 -0.41 5.38 -19.86 -0.11 -0.51 16 26 C -0.08 0.11 2.79 71.24 0.20 0.31 16 27 O -0.57 0.54 12.81 -148.98 -1.91 -1.37 16 28 Si 0.78 -3.00 29.84 68.60 2.05 -0.95 16 29 C -0.15 -0.93 8.67 22.35 0.19 -0.73 16 30 H 0.06 0.03 7.66 -2.39 -0.02 0.01 16 31 H 0.07 -0.05 7.66 -2.38 -0.02 -0.07 16 32 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.13 -1.01 7.67 -2.38 -0.02 -1.03 16 34 H 0.12 -0.93 7.66 -2.39 -0.02 -0.95 16 35 H 0.42 -5.13 8.70 -92.71 -0.81 -5.94 16 36 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 37 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.14 -0.33 5.64 -2.91 -0.02 -0.35 16 39 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 40 H 0.14 -0.55 8.06 -2.91 -0.02 -0.57 16 41 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 42 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.10 0.00 8.10 -2.38 -0.02 -0.02 16 45 H 0.17 -0.99 6.30 -2.91 -0.02 -1.01 16 46 H 0.13 0.20 4.85 -2.91 -0.01 0.19 16 47 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 48 H 0.40 -4.70 8.74 -74.05 -0.65 -5.35 16 49 H -0.29 -0.85 7.05 99.48 0.70 -0.15 16 50 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 51 H 0.15 0.41 6.30 -2.91 -0.02 0.39 16 Total: 0.00 -32.27 434.19 0.11 -32.16 By element: Atomic # 1 Polarization: -17.70 SS G_CDS: -0.43 Total: -18.13 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.14 Total: 6.23 kcal Atomic # 7 Polarization: 3.08 SS G_CDS: -2.32 Total: 0.76 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -3.10 Total: -18.61 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.05 Total: -0.95 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.23 Total: -1.46 kcal Total: -32.27 0.11 -32.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_60476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.320 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds