Wall clock time and date at job start Sat Mar 6 2021 19:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.47126 * 2 1 4 4 C 1.50697 * 109.47328 * 120.00048 * 2 1 3 5 5 C 1.38238 * 119.94282 * 245.02052 * 4 2 1 6 6 C 1.38241 * 120.04751 * 179.97438 * 5 4 2 7 7 Br 1.89101 * 120.03725 * 179.97438 * 6 5 4 8 8 C 1.38792 * 119.92642 * 0.02562 * 6 5 4 9 9 O 1.35911 * 120.06196 * 180.02562 * 8 6 5 10 10 C 1.42898 * 117.00354 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47146 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99998 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84796 * 336.19814 * 14 13 11 16 16 C 1.53781 * 113.61075 * 107.50384 * 14 13 11 17 17 C 1.53785 * 87.07999 * 89.11826 * 16 14 13 18 18 H 1.08997 * 113.68664 * 270.87118 * 17 16 14 19 19 S 1.81394 * 113.61264 * 139.98153 * 17 16 14 20 20 C 1.76200 * 103.00053 * 87.50066 * 19 17 16 21 21 C 1.38972 * 120.08346 * 359.72305 * 20 19 17 22 22 C 1.38080 * 119.91937 * 179.72287 * 21 20 19 23 23 C 1.38298 * 120.08252 * 0.57249 * 22 21 20 24 24 C 1.38304 * 120.16056 * 359.68128 * 23 22 21 25 25 C 1.38084 * 120.07716 * 0.04374 * 24 23 22 26 26 C 1.53777 * 87.08036 * 25.42970 * 17 16 14 27 27 C 1.38719 * 119.88146 * 359.97438 * 8 6 5 28 28 C 1.38148 * 119.95689 * 0.02562 * 27 8 6 29 29 H 0.96703 * 114.00132 * 59.99369 * 1 2 3 30 30 H 1.09005 * 109.46669 * 240.00242 * 2 1 3 31 31 H 1.48497 * 110.00100 * 298.68268 * 3 2 1 32 32 H 1.48500 * 109.99917 * 60.00102 * 3 2 1 33 33 H 1.07998 * 119.97757 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.46733 * 299.99290 * 10 9 8 35 35 H 1.08999 * 109.47227 * 59.99724 * 10 9 8 36 36 H 0.96998 * 120.00170 * 0.02562 * 13 11 10 37 37 H 1.09002 * 113.61046 * 203.66768 * 16 14 13 38 38 H 1.08998 * 113.61817 * 334.56802 * 16 14 13 39 39 H 1.08003 * 120.03791 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.95621 * 180.27893 * 22 21 20 41 41 H 1.07997 * 119.91969 * 179.70110 * 23 22 21 42 42 H 1.07996 * 119.96146 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03751 * 179.97438 * 25 24 23 44 44 H 1.08999 * 113.61394 * 220.01760 * 26 17 16 45 45 H 1.09003 * 113.61307 * 89.11852 * 26 17 16 46 46 H 1.08003 * 120.02358 * 180.02562 * 27 8 6 47 47 H 1.07992 * 119.96574 * 180.27286 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6383 -0.0110 2.1907 6 6 3.0997 -0.6604 3.3205 7 35 4.0673 0.2964 4.6335 8 6 2.8528 -2.0157 3.4895 9 8 3.3047 -2.6568 4.5994 10 6 3.0133 -4.0516 4.7069 11 6 3.5893 -4.5875 5.9922 12 8 4.1906 -3.8479 6.7422 13 7 3.4362 -5.8887 6.3084 14 6 3.9966 -6.4099 7.5577 15 1 4.8283 -5.8120 7.9304 16 6 2.9351 -6.7249 8.6248 17 6 2.8512 -8.1332 8.0128 18 1 2.1214 -8.2180 7.2077 19 16 2.6955 -9.4536 9.2467 20 6 0.9547 -9.5577 9.4983 21 6 0.0984 -8.7130 8.8021 22 6 -1.2656 -8.8014 8.9977 23 6 -1.7793 -9.7211 9.8938 24 6 -0.9299 -10.5598 10.5923 25 6 0.4349 -10.4809 10.3977 26 6 4.2915 -7.9186 7.5185 27 6 2.1431 -2.7146 2.5240 28 6 1.6843 -2.0608 1.3969 29 1 -0.3933 0.4418 -0.7650 30 1 1.7922 -0.5138 -0.8901 31 1 1.5879 2.4586 -1.2242 32 1 1.5615 2.4679 1.2085 33 1 2.8296 1.0437 2.0585 34 1 1.9333 -4.1984 4.7033 35 1 3.4548 -4.5811 3.8627 36 1 2.9557 -6.4803 5.7084 37 1 3.3232 -6.7138 9.6433 38 1 2.0187 -6.1452 8.5137 39 1 0.4992 -7.9916 8.1054 40 1 -1.9318 -8.1483 8.4536 41 1 -2.8462 -9.7846 10.0482 42 1 -1.3346 -11.2770 11.2910 43 1 1.0975 -11.1359 10.9438 44 1 4.4702 -8.3026 6.5141 45 1 5.0504 -8.2340 8.2345 46 1 1.9494 -3.7692 2.6534 47 1 1.1280 -2.6038 0.6473 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_6201210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:41 Heat of formation + Delta-G solvation = -2.070350 kcal Electronic energy + Delta-G solvation = -31342.237391 eV Core-core repulsion = 26823.938913 eV Total energy + Delta-G solvation = -4518.298478 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 450.033 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80689 -41.15499 -39.90307 -39.65209 -38.79542 -37.44614 -34.57383 -33.50133 -32.30062 -32.09852 -31.93487 -30.53128 -29.71615 -27.08259 -26.74098 -26.19875 -24.15974 -23.72747 -23.46869 -22.44300 -21.96737 -20.85197 -19.62594 -18.78893 -18.72535 -18.57228 -17.85030 -17.61137 -17.18159 -17.09415 -16.79785 -16.46623 -16.17472 -15.92350 -15.82964 -15.72673 -15.40991 -14.99360 -14.93981 -14.57333 -14.48950 -14.35075 -14.19699 -14.03498 -13.98675 -13.81441 -13.79684 -13.66458 -13.28287 -12.55439 -12.39206 -12.32381 -12.23505 -12.18103 -12.04016 -11.84545 -11.77775 -11.72569 -11.15485 -11.04832 -11.00540 -10.77538 -10.58924 -10.32202 -10.00276 -9.99623 -9.31003 -8.40620 -5.03285 -0.04668 0.04411 0.20726 0.35886 0.47346 0.71701 1.18607 1.21225 1.32543 1.36182 1.52326 1.88924 2.30698 2.33509 2.71321 3.08356 3.10683 3.19605 3.28431 3.48213 3.55733 3.61119 3.64304 3.67228 3.76822 3.83772 3.84120 3.92678 4.00559 4.12150 4.22456 4.26493 4.28025 4.39606 4.45597 4.47897 4.51109 4.55078 4.56421 4.70112 4.72187 4.74622 4.79890 4.95844 4.96997 5.24182 5.24979 5.26889 5.37362 5.38106 5.51478 5.89061 5.94721 6.18557 6.33526 6.96299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.068 4.068 3 Si 0.674 3.326 4 C -0.104 4.104 5 C -0.047 4.047 6 C -0.118 4.118 7 Br -0.023 7.023 8 C 0.161 3.839 9 O -0.273 6.273 10 C 0.038 3.962 11 C 0.519 3.481 12 O -0.500 6.500 13 N -0.713 5.713 14 C 0.128 3.872 15 H 0.116 0.884 16 C -0.137 4.137 17 C -0.109 4.109 18 H 0.111 0.889 19 S -0.103 6.103 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.125 4.125 24 C -0.100 4.100 25 C -0.102 4.102 26 C -0.114 4.114 27 C -0.204 4.204 28 C -0.034 4.034 29 H 0.381 0.619 30 H 0.080 0.920 31 H -0.257 1.257 32 H -0.251 1.251 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.402 0.598 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -4.071 -5.273 6.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.178 4.178 3 Si 0.574 3.426 4 C -0.105 4.105 5 C -0.067 4.067 6 C -0.198 4.198 7 Br 0.063 6.937 8 C 0.112 3.888 9 O -0.185 6.185 10 C -0.041 4.041 11 C 0.304 3.696 12 O -0.373 6.373 13 N -0.367 5.367 14 C 0.021 3.979 15 H 0.134 0.866 16 C -0.178 4.178 17 C -0.238 4.238 18 H 0.129 0.871 19 S 0.144 5.856 20 C -0.196 4.196 21 C -0.156 4.156 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.154 4.154 27 C -0.224 4.224 28 C -0.053 4.053 29 H 0.230 0.770 30 H 0.098 0.902 31 H -0.181 1.181 32 H -0.175 1.175 33 H 0.160 0.840 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.237 0.763 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.107 0.893 45 H 0.127 0.873 46 H 0.157 0.843 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.640 -3.162 -3.023 4.421 hybrid contribution -2.965 -0.308 -1.844 3.505 sum -2.325 -3.470 -4.867 6.413 Atomic orbital electron populations 1.86583 1.17679 1.80163 1.49940 1.24655 0.84544 1.10826 0.97805 0.95081 0.91784 0.74869 0.80828 1.19114 1.01130 0.94160 0.96114 1.20829 0.95357 0.99671 0.90823 1.20941 1.08318 0.92386 0.98198 1.96811 1.72120 1.72902 1.51885 1.18604 0.93128 0.90704 0.86322 1.86275 1.72868 1.21308 1.38022 1.22526 1.01952 0.82036 0.97601 1.19958 0.80397 0.82209 0.87053 1.90823 1.39262 1.56555 1.50639 1.45471 1.58567 1.09537 1.23110 1.21802 0.97323 0.94594 0.84228 0.86590 1.23790 1.00590 0.93380 1.00007 1.25096 1.02078 0.96528 1.00070 0.87105 1.85571 1.01686 1.46779 1.51546 1.21746 0.96795 1.00110 1.00923 1.21150 0.93874 0.99765 1.00834 1.21096 0.94680 0.98309 0.98003 1.21245 1.00142 0.96184 0.96934 1.21154 0.92859 0.98863 0.99122 1.20815 0.95587 0.98189 0.97977 1.23177 0.94367 0.94636 1.03192 1.21253 1.04325 1.00911 0.95889 1.20921 0.94740 0.93475 0.96143 0.77048 0.90242 1.18143 1.17524 0.83973 0.88492 0.88332 0.76318 0.87389 0.90228 0.86053 0.85698 0.85644 0.85340 0.85450 0.89326 0.87294 0.84299 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.10 12.81 -35.23 -0.45 -0.55 16 2 C -0.07 0.07 2.79 36.00 0.10 0.17 16 3 Si 0.67 -0.74 29.85 -169.99 -5.07 -5.81 16 4 C -0.10 -0.05 5.38 -104.61 -0.56 -0.61 16 5 C -0.05 -0.06 8.40 -39.58 -0.33 -0.39 16 6 C -0.12 -0.29 6.24 -39.38 -0.25 -0.54 16 7 Br -0.02 -0.08 33.16 -68.01 -2.26 -2.33 16 8 C 0.16 0.25 6.68 -39.20 -0.26 -0.01 16 9 O -0.27 -0.60 9.00 -39.37 -0.35 -0.95 16 10 C 0.04 -0.07 5.22 36.01 0.19 0.11 16 11 C 0.52 0.11 7.91 -10.99 -0.09 0.02 16 12 O -0.50 -2.67 16.10 -14.36 -0.23 -2.90 16 13 N -0.71 2.12 5.26 -53.01 -0.28 1.84 16 14 C 0.13 -0.27 4.32 -67.11 -0.29 -0.56 16 15 H 0.12 -0.04 7.46 -51.93 -0.39 -0.42 16 16 C -0.14 0.25 7.35 -25.92 -0.19 0.06 16 17 C -0.11 0.26 2.89 -25.92 -0.07 0.19 16 18 H 0.11 -0.37 6.88 -51.93 -0.36 -0.73 16 19 S -0.10 -0.03 21.72 -107.50 -2.33 -2.36 16 20 C -0.08 -0.11 6.11 -39.04 -0.24 -0.35 16 21 C -0.13 -0.06 9.32 -39.37 -0.37 -0.43 16 22 C -0.10 -0.01 10.04 -39.62 -0.40 -0.41 16 23 C -0.12 -0.02 10.04 -39.54 -0.40 -0.42 16 24 C -0.10 -0.04 10.04 -39.61 -0.40 -0.44 16 25 C -0.10 -0.12 9.79 -39.36 -0.39 -0.51 16 26 C -0.11 0.38 7.42 -25.92 -0.19 0.18 16 27 C -0.20 0.16 9.04 -39.44 -0.36 -0.19 16 28 C -0.03 0.02 9.68 -39.60 -0.38 -0.37 16 29 H 0.38 -1.40 8.74 45.56 0.40 -1.01 16 30 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 31 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 32 H -0.25 -0.54 7.05 56.52 0.40 -0.14 16 33 H 0.14 0.01 4.86 -52.49 -0.26 -0.25 16 34 H 0.10 -0.43 7.66 -51.93 -0.40 -0.83 16 35 H 0.10 -0.47 7.66 -51.93 -0.40 -0.87 16 36 H 0.40 -2.44 8.70 -40.82 -0.36 -2.80 16 37 H 0.11 -0.13 8.10 -51.93 -0.42 -0.56 16 38 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 39 H 0.12 -0.15 5.64 -52.48 -0.30 -0.45 16 40 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 41 H 0.13 -0.21 8.06 -52.49 -0.42 -0.63 16 42 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 43 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 44 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 45 H 0.11 -0.34 8.10 -51.93 -0.42 -0.76 16 46 H 0.14 -0.55 6.30 -52.48 -0.33 -0.88 16 47 H 0.14 -0.28 8.06 -52.49 -0.42 -0.71 16 LS Contribution 425.35 15.07 6.41 6.41 Total: 0.00 -10.33 425.35 -15.24 -25.56 By element: Atomic # 1 Polarization: -8.62 SS G_CDS: -5.79 Total: -14.42 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -4.87 Total: -4.48 kcal Atomic # 7 Polarization: 2.12 SS G_CDS: -0.28 Total: 1.84 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: -1.04 Total: -4.41 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.07 Total: -5.81 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.33 Total: -2.36 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.33 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -10.33 -15.24 -25.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_6201210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.492 kcal (2) G-P(sol) polarization free energy of solvation -10.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds