Wall clock time and date at job start Sat Mar 6 2021 19:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86304 * 109.47126 * 2 1 4 4 C 1.50697 * 109.47328 * 120.00048 * 2 1 3 5 5 C 1.38238 * 119.94282 * 245.02052 * 4 2 1 6 6 C 1.38241 * 120.04751 * 179.97438 * 5 4 2 7 7 Br 1.89101 * 120.03725 * 179.97438 * 6 5 4 8 8 C 1.38792 * 119.92642 * 0.02562 * 6 5 4 9 9 O 1.35911 * 120.06196 * 180.02562 * 8 6 5 10 10 C 1.42898 * 117.00354 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47146 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99937 * 179.97438 * 11 10 9 14 14 C 1.46510 * 119.99998 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84796 * 336.19814 * 14 13 11 16 16 C 1.53781 * 113.61075 * 107.50384 * 14 13 11 17 17 C 1.53785 * 87.07999 * 89.11826 * 16 14 13 18 18 H 1.08997 * 113.68664 * 270.87118 * 17 16 14 19 19 S 1.81394 * 113.61264 * 139.98153 * 17 16 14 20 20 C 1.76200 * 103.00053 * 87.50066 * 19 17 16 21 21 C 1.38972 * 120.08346 * 359.72305 * 20 19 17 22 22 C 1.38080 * 119.91937 * 179.72287 * 21 20 19 23 23 C 1.38298 * 120.08252 * 0.57249 * 22 21 20 24 24 C 1.38304 * 120.16056 * 359.68128 * 23 22 21 25 25 C 1.38084 * 120.07716 * 0.04374 * 24 23 22 26 26 C 1.53777 * 87.08036 * 25.42970 * 17 16 14 27 27 C 1.38719 * 119.88146 * 359.97438 * 8 6 5 28 28 C 1.38148 * 119.95689 * 0.02562 * 27 8 6 29 29 H 0.96703 * 114.00132 * 59.99369 * 1 2 3 30 30 H 1.09005 * 109.46669 * 240.00242 * 2 1 3 31 31 H 1.48497 * 110.00100 * 298.68268 * 3 2 1 32 32 H 1.48500 * 109.99917 * 60.00102 * 3 2 1 33 33 H 1.07998 * 119.97757 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.46733 * 299.99290 * 10 9 8 35 35 H 1.08999 * 109.47227 * 59.99724 * 10 9 8 36 36 H 0.96998 * 120.00170 * 0.02562 * 13 11 10 37 37 H 1.09002 * 113.61046 * 203.66768 * 16 14 13 38 38 H 1.08998 * 113.61817 * 334.56802 * 16 14 13 39 39 H 1.08003 * 120.03791 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.95621 * 180.27893 * 22 21 20 41 41 H 1.07997 * 119.91969 * 179.70110 * 23 22 21 42 42 H 1.07996 * 119.96146 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03751 * 179.97438 * 25 24 23 44 44 H 1.08999 * 113.61394 * 220.01760 * 26 17 16 45 45 H 1.09003 * 113.61307 * 89.11852 * 26 17 16 46 46 H 1.08003 * 120.02358 * 180.02562 * 27 8 6 47 47 H 1.07992 * 119.96574 * 180.27286 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6383 -0.0110 2.1907 6 6 3.0997 -0.6604 3.3205 7 35 4.0673 0.2964 4.6335 8 6 2.8528 -2.0157 3.4895 9 8 3.3047 -2.6568 4.5994 10 6 3.0133 -4.0516 4.7069 11 6 3.5893 -4.5875 5.9922 12 8 4.1906 -3.8479 6.7422 13 7 3.4362 -5.8887 6.3084 14 6 3.9966 -6.4099 7.5577 15 1 4.8283 -5.8120 7.9304 16 6 2.9351 -6.7249 8.6248 17 6 2.8512 -8.1332 8.0128 18 1 2.1214 -8.2180 7.2077 19 16 2.6955 -9.4536 9.2467 20 6 0.9547 -9.5577 9.4983 21 6 0.0984 -8.7130 8.8021 22 6 -1.2656 -8.8014 8.9977 23 6 -1.7793 -9.7211 9.8938 24 6 -0.9299 -10.5598 10.5923 25 6 0.4349 -10.4809 10.3977 26 6 4.2915 -7.9186 7.5185 27 6 2.1431 -2.7146 2.5240 28 6 1.6843 -2.0608 1.3969 29 1 -0.3933 0.4418 -0.7650 30 1 1.7922 -0.5138 -0.8901 31 1 1.5879 2.4586 -1.2242 32 1 1.5615 2.4679 1.2085 33 1 2.8296 1.0437 2.0585 34 1 1.9333 -4.1984 4.7033 35 1 3.4548 -4.5811 3.8627 36 1 2.9557 -6.4803 5.7084 37 1 3.3232 -6.7138 9.6433 38 1 2.0187 -6.1452 8.5137 39 1 0.4992 -7.9916 8.1054 40 1 -1.9318 -8.1483 8.4536 41 1 -2.8462 -9.7846 10.0482 42 1 -1.3346 -11.2770 11.2910 43 1 1.0975 -11.1359 10.9438 44 1 4.4702 -8.3026 6.5141 45 1 5.0504 -8.2340 8.2345 46 1 1.9494 -3.7692 2.6534 47 1 1.1280 -2.6038 0.6473 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_6201210.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:40 Heat of formation + Delta-G solvation = 0.982334 kcal Electronic energy + Delta-G solvation = -31342.105016 eV Core-core repulsion = 26823.938913 eV Total energy + Delta-G solvation = -4518.166103 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 450.033 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.75583 -41.08625 -39.86629 -39.58796 -38.78176 -37.39366 -34.52875 -33.52152 -32.24086 -32.06442 -31.90566 -30.53379 -29.64423 -26.91447 -26.64021 -26.08896 -24.11150 -23.70119 -23.43215 -22.39992 -21.88948 -20.73705 -19.54921 -18.72754 -18.66462 -18.49012 -17.77071 -17.50052 -17.15412 -17.00630 -16.71263 -16.40607 -16.10568 -15.85342 -15.79975 -15.71627 -15.36416 -14.94242 -14.87887 -14.51409 -14.42962 -14.28737 -14.16115 -14.02324 -13.93257 -13.78435 -13.67879 -13.59126 -13.20546 -12.52861 -12.33385 -12.25166 -12.15162 -12.09961 -11.92065 -11.88658 -11.76727 -11.68650 -11.21539 -11.11777 -11.02347 -10.74665 -10.50181 -10.23471 -9.99881 -9.98465 -9.31289 -8.40625 -4.96606 -0.02826 0.07883 0.21407 0.36940 0.53173 0.62799 1.26479 1.32904 1.39440 1.41952 1.54350 1.91391 2.36737 2.45190 2.72607 3.23969 3.28431 3.32042 3.44514 3.64278 3.68282 3.78055 3.79470 3.83438 3.90740 3.99582 4.03967 4.07227 4.07394 4.20304 4.32389 4.39834 4.42499 4.46304 4.52388 4.63531 4.64982 4.66642 4.75450 4.76103 4.79771 4.86081 4.93565 5.01987 5.03335 5.25934 5.31114 5.40397 5.41309 5.46711 5.53623 5.93563 6.04854 6.39551 6.59465 7.09404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.065 4.065 3 Si 0.730 3.270 4 C -0.114 4.114 5 C -0.059 4.059 6 C -0.140 4.140 7 Br -0.049 7.049 8 C 0.150 3.850 9 O -0.304 6.304 10 C 0.032 3.968 11 C 0.517 3.483 12 O -0.563 6.563 13 N -0.693 5.693 14 C 0.127 3.873 15 H 0.094 0.906 16 C -0.137 4.137 17 C -0.094 4.094 18 H 0.128 0.872 19 S -0.133 6.133 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.103 4.103 27 C -0.194 4.194 28 C -0.034 4.034 29 H 0.397 0.603 30 H 0.110 0.890 31 H -0.278 1.278 32 H -0.304 1.304 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.422 0.578 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.176 0.824 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -6.005 -7.600 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.175 4.175 3 Si 0.637 3.363 4 C -0.115 4.115 5 C -0.078 4.078 6 C -0.220 4.220 7 Br 0.036 6.964 8 C 0.102 3.898 9 O -0.216 6.216 10 C -0.045 4.045 11 C 0.303 3.697 12 O -0.440 6.440 13 N -0.347 5.347 14 C 0.019 3.981 15 H 0.112 0.888 16 C -0.178 4.178 17 C -0.223 4.223 18 H 0.146 0.854 19 S 0.114 5.886 20 C -0.209 4.209 21 C -0.164 4.164 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.213 4.213 28 C -0.052 4.052 29 H 0.248 0.752 30 H 0.127 0.873 31 H -0.205 1.205 32 H -0.232 1.232 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.260 0.740 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.194 0.806 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.702 -5.150 -5.393 7.490 hybrid contribution -2.616 0.302 -1.096 2.852 sum -3.318 -4.848 -6.488 8.753 Atomic orbital electron populations 1.86535 1.18175 1.80470 1.51331 1.24640 0.84169 1.10246 0.98442 0.94424 0.91046 0.74123 0.76748 1.19334 1.00947 0.94957 0.96241 1.20894 0.96026 0.99829 0.91045 1.21086 1.09460 0.93208 0.98278 1.96762 1.72884 1.73605 1.53140 1.18764 0.93684 0.90457 0.86864 1.86237 1.73409 1.23415 1.38526 1.22846 1.03927 0.80497 0.97238 1.20479 0.79405 0.82481 0.87299 1.90804 1.42274 1.58225 1.52733 1.45300 1.57659 1.08931 1.22832 1.21694 0.96711 0.95063 0.84594 0.88793 1.23742 1.00403 0.93913 0.99693 1.25150 1.03049 0.94673 0.99442 0.85378 1.85653 1.01772 1.48127 1.53083 1.21903 0.97151 1.00518 1.01314 1.21389 0.94086 0.99866 1.01016 1.21411 0.94939 0.98477 0.98025 1.21543 1.01083 0.96020 0.96784 1.21407 0.92693 0.99314 0.99472 1.21008 0.96214 0.98747 0.98567 1.23137 0.93714 0.93215 1.04149 1.21618 1.02601 1.02443 0.94623 1.21247 0.94230 0.93067 0.96645 0.75239 0.87266 1.20474 1.23164 0.84123 0.85353 0.84818 0.74014 0.88448 0.90511 0.84564 0.83836 0.83985 0.83929 0.85435 0.87368 0.87592 0.80628 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.57 12.81 -148.98 -1.91 -1.34 16 2 C -0.06 0.21 2.79 71.24 0.20 0.41 16 3 Si 0.73 -1.17 29.85 68.60 2.05 0.88 16 4 C -0.11 0.02 5.38 -19.85 -0.11 -0.08 16 5 C -0.06 -0.18 8.40 22.27 0.19 0.01 16 6 C -0.14 -0.82 6.24 22.40 0.14 -0.68 16 7 Br -0.05 -0.45 33.16 -20.37 -0.68 -1.12 16 8 C 0.15 0.38 6.68 22.52 0.15 0.53 16 9 O -0.30 -1.27 9.00 -73.51 -0.66 -1.93 16 10 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 11 C 0.52 0.02 7.91 87.66 0.69 0.72 16 12 O -0.56 -6.95 16.10 16.00 0.26 -6.69 16 13 N -0.69 4.99 5.26 -440.03 -2.32 2.67 16 14 C 0.13 -0.53 4.32 45.51 0.20 -0.34 16 15 H 0.09 0.10 7.46 -2.39 -0.02 0.08 16 16 C -0.14 0.47 7.35 31.12 0.23 0.70 16 17 C -0.09 0.53 2.89 31.12 0.09 0.62 16 18 H 0.13 -1.14 6.88 -2.39 -0.02 -1.15 16 19 S -0.13 -0.12 21.72 -56.49 -1.23 -1.35 16 20 C -0.10 -0.28 6.11 22.62 0.14 -0.14 16 21 C -0.14 -0.04 9.32 22.41 0.21 0.17 16 22 C -0.11 0.07 10.04 22.25 0.22 0.29 16 23 C -0.13 0.03 10.04 22.30 0.22 0.26 16 24 C -0.11 -0.10 10.04 22.25 0.22 0.12 16 25 C -0.12 -0.39 9.79 22.41 0.22 -0.17 16 26 C -0.10 0.76 7.42 31.12 0.23 0.99 16 27 C -0.19 0.83 9.04 22.36 0.20 1.03 16 28 C -0.03 0.12 9.68 22.26 0.22 0.33 16 29 H 0.40 -3.44 8.74 -74.06 -0.65 -4.09 16 30 H 0.11 -0.96 7.96 -2.38 -0.02 -0.98 16 31 H -0.28 -0.50 7.11 99.48 0.71 0.20 16 32 H -0.30 -2.14 7.05 99.48 0.70 -1.44 16 33 H 0.14 0.28 4.86 -2.91 -0.01 0.26 16 34 H 0.13 -1.59 7.66 -2.39 -0.02 -1.61 16 35 H 0.13 -1.76 7.66 -2.39 -0.02 -1.78 16 36 H 0.42 -6.31 8.70 -92.71 -0.81 -7.11 16 37 H 0.10 -0.11 8.10 -2.39 -0.02 -0.13 16 38 H 0.08 -0.21 8.14 -2.39 -0.02 -0.22 16 39 H 0.14 -0.52 5.64 -2.91 -0.02 -0.54 16 40 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 41 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 42 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 43 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 44 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 45 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 46 H 0.18 -2.20 6.30 -2.91 -0.02 -2.22 16 47 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 Total: 0.00 -28.65 425.35 -0.83 -29.47 By element: Atomic # 1 Polarization: -25.16 SS G_CDS: -0.38 Total: -25.54 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.03 Total: 4.95 kcal Atomic # 7 Polarization: 4.99 SS G_CDS: -2.32 Total: 2.67 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -2.31 Total: -9.97 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.05 Total: 0.88 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.23 Total: -1.35 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -0.68 Total: -1.12 kcal Total: -28.65 -0.83 -29.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_6201210.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.456 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds