Wall clock time and date at job start Sat Mar 6 2021 19:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33813 * 122.44931 * 2 1 4 4 C 1.50700 * 124.52513 * 0.02840 * 3 2 1 5 5 O 1.42895 * 109.47183 * 246.71586 * 4 3 2 6 6 Si 1.86299 * 109.47247 * 126.71284 * 4 3 2 7 7 S 1.70623 * 110.95331 * 179.78712 * 3 2 1 8 8 C 1.75833 * 91.56078 * 0.30788 * 7 3 2 9 9 C 1.46582 * 125.45212 * 179.97438 * 8 7 3 10 10 O 1.21706 * 119.99754 * 179.69267 * 9 8 7 11 11 N 1.34772 * 120.00428 * 359.69696 * 9 8 7 12 12 C 1.46501 * 120.00242 * 179.97438 * 11 9 8 13 13 H 1.09000 * 112.90523 * 336.25177 * 12 11 9 14 14 C 1.54043 * 113.61508 * 107.61656 * 12 11 9 15 15 C 1.53780 * 87.07862 * 89.07580 * 14 12 11 16 16 H 1.09004 * 113.61274 * 270.87891 * 15 14 12 17 17 S 1.81400 * 113.61677 * 139.98330 * 15 14 12 18 18 C 1.76193 * 103.00215 * 87.49984 * 17 15 14 19 19 C 1.38972 * 120.08301 * 359.73298 * 18 17 15 20 20 C 1.38085 * 119.91776 * 179.72278 * 19 18 17 21 21 C 1.38299 * 120.07991 * 0.52362 * 20 19 18 22 22 C 1.38299 * 120.16382 * 359.76866 * 21 20 19 23 23 C 1.38084 * 120.07990 * 359.95486 * 22 21 20 24 24 C 1.53778 * 87.08106 * 25.42773 * 15 14 12 25 25 C 1.36642 * 109.08318 * 359.69639 * 8 7 3 26 26 H 1.09003 * 109.46587 * 275.12200 * 1 2 3 27 27 H 1.08993 * 109.47214 * 35.11729 * 1 2 3 28 28 H 1.09000 * 109.47499 * 155.12440 * 1 2 3 29 29 H 1.08999 * 109.46614 * 6.71262 * 4 3 2 30 30 H 0.96705 * 113.99579 * 299.99705 * 5 4 3 31 31 H 1.48500 * 109.99912 * 180.02562 * 6 4 3 32 32 H 1.48504 * 110.00136 * 301.31791 * 6 4 3 33 33 H 0.96999 * 119.99961 * 359.97438 * 11 9 8 34 34 H 1.09011 * 113.61855 * 334.52615 * 14 12 11 35 35 H 1.08996 * 113.69754 * 203.63278 * 14 12 11 36 36 H 1.08004 * 120.03707 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.95607 * 180.27024 * 20 19 18 38 38 H 1.08003 * 119.91841 * 179.74946 * 21 20 19 39 39 H 1.08000 * 119.96138 * 179.97438 * 22 21 20 40 40 H 1.07992 * 120.04156 * 179.97438 * 23 22 21 41 41 H 1.09008 * 113.61053 * 89.11823 * 24 15 14 42 42 H 1.08991 * 113.61668 * 219.93222 * 24 15 14 43 43 H 1.08006 * 123.34690 * 180.24741 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 1.9388 3.1632 -1.2368 6 14 2.3596 3.4980 1.4086 7 16 3.8970 0.7892 0.0059 8 6 3.5936 -0.9428 -0.0010 9 6 4.6231 -1.9863 -0.0006 10 8 4.3001 -3.1597 -0.0001 11 7 5.9273 -1.6463 -0.0008 12 6 6.9561 -2.6893 0.0002 13 1 6.5998 -3.6364 0.4053 14 6 7.6937 -2.8296 -1.3449 15 6 8.6843 -1.7760 -0.8219 16 1 8.3904 -0.7508 -1.0470 17 16 10.4116 -2.1258 -1.2516 18 6 10.5865 -1.3728 -2.8349 19 6 9.5065 -0.7231 -3.4204 20 6 9.6490 -0.1291 -4.6588 21 6 10.8615 -0.1895 -5.3211 22 6 11.9368 -0.8404 -4.7442 23 6 11.8034 -1.4318 -3.5036 24 6 8.2978 -2.2305 0.5955 25 6 2.2446 -1.1601 -0.0006 26 1 -0.3632 0.0918 1.0236 27 1 -0.3633 0.8405 -0.5911 28 1 -0.3634 -0.9323 -0.4323 29 1 0.5542 2.4512 0.1212 30 1 2.8856 3.2556 -1.4106 31 1 1.7858 4.8676 1.4205 32 1 2.0783 2.8189 2.6989 33 1 6.1847 -0.7111 -0.0015 34 1 7.1091 -2.4924 -2.2009 35 1 8.1415 -3.8114 -1.4986 36 1 8.5580 -0.6794 -2.9056 37 1 8.8112 0.3797 -5.1125 38 1 10.9689 0.2725 -6.2914 39 1 12.8821 -0.8859 -5.2646 40 1 12.6433 -1.9402 -3.0539 41 1 8.9103 -3.0490 0.9738 42 1 8.2023 -1.4098 1.3063 43 1 1.8019 -2.1452 -0.0003 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_6739946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:55 Heat of formation + Delta-G solvation = 24.997048 kcal Electronic energy + Delta-G solvation = -26337.486346 eV Core-core repulsion = 22568.014040 eV Total energy + Delta-G solvation = -3769.472306 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.080 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41633 -40.05080 -39.81048 -39.11864 -37.57360 -34.57262 -32.43787 -32.01563 -31.87429 -29.88771 -27.61948 -26.88560 -25.93677 -24.38489 -23.67052 -23.38486 -22.09453 -20.85143 -20.12232 -19.58159 -18.69183 -17.98680 -17.60486 -17.49121 -16.92193 -16.47563 -16.37010 -16.15092 -15.81691 -15.74352 -15.56782 -15.19444 -14.90723 -14.82551 -14.39874 -14.36387 -14.24227 -14.14923 -13.80396 -13.60823 -13.50803 -13.23242 -13.15565 -13.03758 -12.47366 -12.28890 -12.22820 -12.09151 -11.98121 -11.89617 -11.67801 -11.36220 -11.06035 -10.79781 -10.72702 -10.32322 -9.95554 -9.73282 -9.44315 -8.37983 -5.19545 -0.72750 0.24185 0.28257 0.39874 0.55069 0.66163 1.03184 1.23235 1.39562 1.58019 1.85568 1.87176 1.99807 2.75483 3.24663 3.27524 3.34048 3.52683 3.58742 3.68182 3.79745 3.93245 4.01926 4.03172 4.15226 4.23154 4.37798 4.41176 4.43468 4.49154 4.55163 4.62387 4.64427 4.68041 4.70795 4.78641 4.79982 4.86664 4.92398 4.93004 5.04839 5.22361 5.28860 5.32538 5.37867 5.44253 5.56527 5.96482 6.26010 6.58176 6.95289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.113 4.113 3 C -0.240 4.240 4 C -0.038 4.038 5 O -0.546 6.546 6 Si 0.759 3.241 7 S 0.280 5.720 8 C -0.285 4.285 9 C 0.596 3.404 10 O -0.566 6.566 11 N -0.696 5.696 12 C 0.124 3.876 13 H 0.101 0.899 14 C -0.135 4.135 15 C -0.097 4.097 16 H 0.126 0.874 17 S -0.127 6.127 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.057 4.057 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.394 0.606 31 H -0.276 1.276 32 H -0.283 1.283 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 5.145 -0.031 5.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.360 4.360 4 C -0.150 4.150 5 O -0.353 6.353 6 Si 0.662 3.338 7 S 0.550 5.450 8 C -0.406 4.406 9 C 0.383 3.617 10 O -0.446 6.446 11 N -0.347 5.347 12 C 0.017 3.983 13 H 0.119 0.881 14 C -0.176 4.176 15 C -0.226 4.226 16 H 0.143 0.857 17 S 0.119 5.881 18 C -0.210 4.210 19 C -0.164 4.164 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.091 4.091 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.244 0.756 31 H -0.202 1.202 32 H -0.209 1.209 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.773 5.059 1.437 6.473 hybrid contribution -2.657 -0.446 -1.061 2.896 sum 1.116 4.613 0.376 4.761 Atomic orbital electron populations 1.20648 0.88644 1.03776 1.03099 1.18800 0.98819 0.90924 1.04064 1.24716 1.00205 1.00831 1.10246 1.24769 1.03943 0.89565 0.96708 1.86555 1.31516 1.79281 1.37987 0.94284 0.88655 0.76730 0.74161 1.82199 1.00885 0.95243 1.66697 1.24508 0.97578 0.98615 1.19863 1.17102 0.82303 0.87042 0.75244 1.90848 1.82238 1.20016 1.51548 1.45384 1.04171 1.10475 1.74704 1.21837 0.86976 0.92228 0.97297 0.88087 1.23797 0.96257 0.99724 0.97831 1.25135 0.92492 1.03364 1.01579 0.85657 1.85604 1.16289 1.69686 1.16478 1.21909 0.97583 1.02670 0.98814 1.21384 0.97972 0.99848 0.97149 1.21414 0.98485 0.98467 0.94438 1.21543 0.93124 0.99683 1.01053 1.21406 1.00033 0.96747 0.94700 1.21001 0.96242 1.01298 0.95923 1.23156 0.93817 1.03423 0.93926 1.20744 0.91470 1.00128 0.96769 0.90313 0.90741 0.90624 0.85764 0.75607 1.20238 1.20874 0.75072 0.90588 0.87899 0.84713 0.83810 0.83968 0.83923 0.85400 0.87076 0.87588 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.15 9.48 71.24 0.68 0.83 16 2 C -0.11 -0.10 5.78 -21.05 -0.12 -0.22 16 3 C -0.24 0.49 4.83 24.68 0.12 0.61 16 4 C -0.04 0.12 2.77 71.24 0.20 0.32 16 5 O -0.55 1.57 12.88 -148.98 -1.92 -0.35 16 6 Si 0.76 -3.34 32.12 68.60 2.20 -1.13 16 7 S 0.28 -1.72 20.81 -56.49 -1.18 -2.90 16 8 C -0.29 -0.40 6.45 24.07 0.16 -0.24 16 9 C 0.60 2.46 7.78 86.42 0.67 3.13 16 10 O -0.57 -7.27 16.44 -4.37 -0.07 -7.34 16 11 N -0.70 2.10 5.26 -443.66 -2.33 -0.23 16 12 C 0.12 -0.35 4.34 45.61 0.20 -0.15 16 13 H 0.10 0.11 7.46 -2.39 -0.02 0.10 16 14 C -0.14 0.39 7.36 31.21 0.23 0.62 16 15 C -0.10 0.46 2.89 31.12 0.09 0.55 16 16 H 0.13 -0.94 6.88 -2.39 -0.02 -0.96 16 17 S -0.13 -0.11 21.72 -56.49 -1.23 -1.34 16 18 C -0.10 -0.28 6.11 22.62 0.14 -0.14 16 19 C -0.14 -0.06 9.32 22.41 0.21 0.14 16 20 C -0.11 0.07 10.04 22.25 0.22 0.29 16 21 C -0.13 0.05 10.04 22.30 0.22 0.28 16 22 C -0.11 -0.08 10.04 22.25 0.22 0.14 16 23 C -0.12 -0.36 9.79 22.41 0.22 -0.14 16 24 C -0.10 0.68 7.41 31.12 0.23 0.91 16 25 C -0.06 -0.18 9.78 21.71 0.21 0.03 16 26 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.07 -0.15 7.00 -2.39 -0.02 -0.17 16 28 H 0.07 -0.15 8.10 -2.39 -0.02 -0.17 16 29 H 0.13 -0.31 6.25 -2.39 -0.01 -0.33 16 30 H 0.39 -4.42 8.70 -74.05 -0.64 -5.06 16 31 H -0.28 -0.50 7.11 99.48 0.71 0.21 16 32 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 33 H 0.41 -3.63 7.81 -92.71 -0.72 -4.35 16 34 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.10 -0.16 8.10 -2.39 -0.02 -0.18 16 36 H 0.14 -0.43 5.64 -2.91 -0.02 -0.45 16 37 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 38 H 0.14 -0.64 8.06 -2.91 -0.02 -0.67 16 39 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 40 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 41 H 0.11 -0.70 8.10 -2.38 -0.02 -0.72 16 42 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 Total: 0.00 -19.81 386.41 -0.90 -20.71 By element: Atomic # 1 Polarization: -14.10 SS G_CDS: -0.27 Total: -14.37 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 3.90 Total: 6.96 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.33 Total: -0.23 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -1.99 Total: -7.69 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.20 Total: -1.13 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.40 Total: -4.23 kcal Total: -19.81 -0.90 -20.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_6739946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.703 kcal (2) G-P(sol) polarization free energy of solvation -19.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds